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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0101400 |
| Transcript ID | LotjaGi5g1v0101400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme, E2; TAIR: AT2G36060.1 MMS ZWEI homologue 3; Swiss-Prot: sp|Q9SJ44|UEV1C_ARATH Ubiquitin-conjugating enzyme E2 variant 1C; TrEMBL-Plants: tr|I3SG26|I3SG26_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0101400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18257495..18259236) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATATAGAAGGTTTCAATTTGTTGTATGAGTTAATCATGTCCTTCTAATTCGTGGAAAATGATTTTATACTAGTTAA AGATGATATCAAGGTTTGAGTTCGGTATACTTCTTCTGACCCTTGACTTTTAGACATTGAATTTGCTATGGTTAAATGTT TTGGAAATGATTGTGGTATTACATGGAGACATTATTTACATGCATGGTCCGTACAATGTCTTGTTACACGGTGTTAGTCT TGGCTGATTTCGAAGCTGTAAGTGTGTTATTTTTAATGTATTTATAATTATTTGAATGCAGTCCCAAGGAACTTCAGATT GCTGGAGGAACTCGAAAGGGGAGAAAAAGGTATTGGAGATGGCACAGTAAGCTATGGAATGGATGACGGTGATGACATTT ACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATGTAAATTTTTTTGTTACTGCCCTACATTTCTTTTATGTG CGCCTTGAAAACGTAAATTCACATGCAGCAATTGAACATTCTAAAATCTAAGTCCTTACTTCCAGCTTGTATCAACGGAG CATGTTTTACACACACACACACACAAATGTTTACATGAACATATTCTTGTATGTGTAGTATGTAAACCTGCACAGTTTTC ATTGTCTAGTCCAGATTCAAGTCAAGAATTTGGTTAGACTGCTAGATGCTAGCGAACATAACCTTCATGCTTGTGAATGT AAACCTCTGTATTTGTACATACAGACTGACTATTAATGTGTAGCTGTAGTGAGCATAATATTGATGATTCAGAGAAAATT ATAATTGGAAGTGTGATTAGAATAATGTGATTTATCATGTGGTTACAATAGGGTGATCTTTTGGCTTTCTTTAATATAGA ATACTAATGATCTTTCACTTTTCTGTTGGGTCTCTGTCATGACTTGATTAATGTGGCATGTTAAAGAAGTCTGAATTATG AATTATTTGTCTATCCTTACACCTGGAATTTTGGCTCGGTTTGACTCTTTTGTATTGTGCACTTACTTTGATTTGTATAT ACTTAACAAGCTGAGATCCTATAATGTGTTCTTTCTCTTTTATCTTCTCTGTTAGACTGTACATGAAGGAAGAATTTATC AACTGAAGCTGTTTTGTGATAAAGACTATCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAATATGACTTGT GTTAATCATGAAACTGGAGTGGTATCATTTATAATTTCTTACATTCTTTCATTTTCTTTCATATTCTGTTTCATTCACGG ATAAATCTTGTGCACTGCAATGCTGCTGTGAGATATATGAAGTTACCACTATGCTGTCAAATGCTTTCTTTTATTTTACT GTTGGTGATAACTTTGAGACGTGTTACTAGATATGTAATCAAGATTTTTGATGTGGGTTTTTGGAAACGGAATAATGCCA TATTTATTTAAATCTTCCTTTGTAGGAAAGTACAGGGTTTCCCATCAGTATCACCATCCCGTTCCCTTTATTTTAAATTG ATAACATGAATATCCAGTTCAATTTGCATACATAACTGGTTTTTTTGTGTTGTAAGATTTATAGACTTGTAATTGAAACA GGTTGAACCCAAGAAGTTTGTTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGATATACTAACCCAGCTGAAGA AGGAAATGGCAGCTCCTCACAACCGGAAGCTTGTCCAGCCCCCAGAGGGAACCTACTTTTAA
CDS sequence (LotjaGi5g1v0101400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATCATTGGCCCCCATAATACTGTACATGAAGGAAG AATTTATCAACTGAAGCTGTTTTGTGATAAAGACTATCCAGAAAAGCCCCCAAGTGTTCGGTTTCATTCACGGATCAATA TGACTTGTGTTAATCATGAAACTGGAGTGGTTGAACCCAAGAAGTTTGTTCTTCTTGCAAATTGGCAAAGAGAGTACACC ATGGAGGATATACTAACCCAGCTGAAGAAGGAAATGGCAGCTCCTCACAACCGGAAGCTTGTCCAGCCCCCAGAGGGAAC CTACTTTTAA
Protein sequence (LotjaGi5g1v0101400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFVLLANWQREYT MEDILTQLKKEMAAPHNRKLVQPPEGTYF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 9.5E-57 | – | |
| PANTHER | 1 | 107 | 107 | 9.5E-57 | – | |
| ProSiteProfiles | 1 | 96 | 96 | 15.259 | ||
| Gene3D | 1 | 109 | 109 | 2.7E-45 | ||
| SUPERFAMILY | 3 | 109 | 107 | 9.56E-30 | ||
| Pfam | 8 | 99 | 92 | 1.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0101400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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