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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR24068
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We have found 99 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.028s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036909.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr0 11863209 11865412 +
1 domain prediction
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Lj0g3v0063729.1
n.a. Ubiquitin-conjugating enzyme 28 isoform 1 [Theobroma cacao] gi|508719952|gb|EOY11849.1| chr0 21739113 21742134 +
1 domain prediction
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Lj0g3v0115729.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Solanum lycopersicum] gi|460388869|ref|XP_004240086.1| chr0 50870160 50874030 +
1 domain prediction
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Lj1g3v0935410.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356516007|ref|XP_003526688.1| chr1 11741792 11744584 +
1 domain prediction
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Lj1g3v2533810.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr1 29047440 29050771 -
1 domain prediction
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Lj2g3v2447150.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr2 34554624 34559689 -
1 domain prediction
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Lj3g3v1953280.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Fragaria vesca subsp]. vesca] gi|470117130|ref|XP_004294717.1| chr3 25054053 25056060 -
1 domain prediction
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Lj3g3v3453420.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356544896|ref|XP_003540883.1| chr3 42219024 42221040 -
1 domain prediction
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Lj4g3v2604000.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr4 35015760 35017963 -
1 domain prediction
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LotjaGi1g1v0105100.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234739 16240731 +
1 domain prediction
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LotjaGi1g1v0105100.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16234944 16238947 +
1 domain prediction
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LotjaGi1g1v0105100.3
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.1 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235121 16239684 +
1 domain prediction
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LotjaGi1g1v0105100.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0D3EAM2|A0A0D3EAM2_BRAOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16238968 +
1 domain prediction
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LotjaGi1g1v0105100.5
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
1 domain prediction
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LotjaGi1g1v0105100.6
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|A0A0B2QXH0|A0A0B2QXH0_GLYSO Ubiquitin-conjugating enzyme E2-17 kDa; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235207 16239684 +
1 domain prediction
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LotjaGi1g1v0105100.7
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|M5W1P5|M5W1P5_PRUPE Uncharacterized protein; Found in the gene: LotjaGi1g1v0105100 LjG1.1_chr1 16235830 16239684 +
1 domain prediction
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LotjaGi1g1v0276600.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67754217 67758255 -
1 domain prediction
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LotjaGi1g1v0276600.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67756624 -
1 domain prediction
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LotjaGi1g1v0276600.3
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67756716 -
1 domain prediction
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LotjaGi1g1v0276600.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
1 domain prediction
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LotjaGi1g1v0276600.5
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|F4I5B8|F4I5B8_ARATH Ubiquitin-conjugating enzyme E2 28; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
1 domain prediction
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LotjaGi1g1v0276600.6
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|V7AW87|V7AW87_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
1 domain prediction
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LotjaGi1g1v0276600.7
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
1 domain prediction
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LotjaGi1g1v0276600.8
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G53300.1 ubiquitin-conjugating enzyme 10; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|W9RDV8|W9RDV8_9ROSA Ubiquitin-conjugating enzyme E2 10; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757741 -
1 domain prediction
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LotjaGi1g1v0276600.9
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT4G27960.1 ubiquitin conjugating enzyme 9; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078FMX9|A0A078FMX9_BRANA BnaA08g13930D protein; Found in the gene: LotjaGi1g1v0276600 LjG1.1_chr1 67755692 67757855 -
1 domain prediction
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LotjaGi1g1v0335000.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406361 79410057 -
1 domain prediction
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LotjaGi1g1v0335000.2
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406484 79410144 -
1 domain prediction
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LotjaGi1g1v0401300.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G25760.1 peroxin4; Swiss-Prot: sp|Q8LGF7|PEX4_ARATH Protein PEROXIN-4; TrEMBL-Plants: tr|I3SC14|I3SC14_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0401300 LjG1.1_chr1 88934033 88939387 +
1 domain prediction
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LotjaGi1g1v0458700.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96212820 96216930 -
1 domain prediction
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LotjaGi1g1v0458700.10
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078DJ43|A0A078DJ43_BRANA BnaA01g16780D protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96214796 96216442 -
1 domain prediction
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LotjaGi1g1v0458700.11
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A078DJ43|A0A078DJ43_BRANA BnaA01g16780D protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96214936 96216442 -
1 domain prediction
 –
LotjaGi1g1v0458700.12
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G41700.3 ubiquitin conjugating enzyme 8; Swiss-Prot: sp|P35133|UBC10_ARATH Ubiquitin-conjugating enzyme E2 10; TrEMBL-Plants: tr|A0A0B2RC86|A0A0B2RC86_GLYSO SUMO-conjugating enzyme UBC9; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96215000 96216483 -
1 domain prediction
 –
LotjaGi1g1v0458700.2
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2 8; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96215521 -
1 domain prediction
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LotjaGi1g1v0458700.3
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|F4I5B8|F4I5B8_ARATH Ubiquitin-conjugating enzyme E2 28; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216442 -
1 domain prediction
 –
LotjaGi1g1v0458700.4
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A0B0PZW6|A0A0B0PZW6_GOSAR Ubiquitin-conjugating enzyme E2-17 kDa; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216442 -
1 domain prediction
 –
LotjaGi1g1v0458700.5
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|A0A078G9X5|A0A078G9X5_BRANA BnaC01g39370D protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216442 -
1 domain prediction
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LotjaGi1g1v0458700.6
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.4 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2 8; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216442 -
1 domain prediction
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LotjaGi1g1v0458700.7
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216483 -
1 domain prediction
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LotjaGi1g1v0458700.8
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216735 -
1 domain prediction
 –
LotjaGi1g1v0458700.9
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28; TrEMBL-Plants: tr|B9HDK6|B9HDK6_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0458700 LjG1.1_chr1 96213682 96216740 -
1 domain prediction
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LotjaGi1g1v0478300.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G63800.1 ubiquitin-conjugating enzyme 5; Swiss-Prot: sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5; TrEMBL-Plants: tr|V7AN49|V7AN49_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0478300 LjG1.1_chr1 99006333 99009678 -
1 domain prediction
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LotjaGi1g1v0478300.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G63800.1 ubiquitin-conjugating enzyme 5; Swiss-Prot: sp|P42749|UBC5_ARATH Ubiquitin-conjugating enzyme E2 5; TrEMBL-Plants: tr|V7AN49|V7AN49_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0478300 LjG1.1_chr1 99006962 99009237 -
1 domain prediction
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LotjaGi1g1v0533700.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A059BWT3|A0A059BWT3_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0533700 LjG1.1_chr1 106207466 106211806 -
1 domain prediction
 –
LotjaGi1g1v0533700.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G64230.1 ubiquitin-conjugating enzyme 28; Swiss-Prot: sp|P35135|UBC4_SOLLC Ubiquitin-conjugating enzyme E2-17 kDa; TrEMBL-Plants: tr|A0A059BWT3|A0A059BWT3_EUCGR Uncharacterized protein; Found in the gene: LotjaGi1g1v0533700 LjG1.1_chr1 106207789 106210071 -
1 domain prediction
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LotjaGi1g1v0652900.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G05080.1 ubiquitin-conjugating enzyme 22; Swiss-Prot: sp|Q9FF66|UBC22_ARATH Ubiquitin-conjugating enzyme E2 22; TrEMBL-Plants: tr|A0A151TAH4|A0A151TAH4_CAJCA Ubiquitin carrier protein E2 22; Found in the gene: LotjaGi1g1v0652900 LjG1.1_chr1 121225742 121229602 +
1 domain prediction
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LotjaGi1g1v0652900.2
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT5G05080.1 ubiquitin-conjugating enzyme 22; Swiss-Prot: sp|Q9FF66|UBC22_ARATH Ubiquitin-conjugating enzyme E2 22; TrEMBL-Plants: tr|A0A151TAH4|A0A151TAH4_CAJCA Ubiquitin carrier protein E2 22; Found in the gene: LotjaGi1g1v0652900 LjG1.1_chr1 121226936 121229287 +
1 domain prediction
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LotjaGi2g1v0385000.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT1G75440.1 ubiquitin-conjugating enzyme 16; Swiss-Prot: sp|Q9FWT2|UBC16_ARATH Probable ubiquitin-conjugating enzyme E2 16; TrEMBL-Plants: tr|I3SRG0|I3SRG0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0385000 LjG1.1_chr2 88124584 88128590 -
1 domain prediction
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LotjaGi2g1v0393900.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT4G36800.1 RUB1 conjugating enzyme 1; Swiss-Prot: sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12; TrEMBL-Plants: tr|I3SJX4|I3SJX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0393900 LjG1.1_chr2 89143943 89152763 -
1 domain prediction
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LotjaGi2g1v0393900.2
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT4G36800.1 RUB1 conjugating enzyme 1; Swiss-Prot: sp|Q9SDY5|RCE1_ARATH NEDD8-conjugating enzyme Ubc12; TrEMBL-Plants: tr|I3SJX4|I3SJX4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0393900 LjG1.1_chr2 89148703 89152182 -
1 domain prediction
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LotjaGi2g1v0443400.1
n.a. Ubiquitin-conjugating enzyme E2; TAIR: AT3G20060.1 ubiquitin-conjugating enzyme19; Swiss-Prot: sp|Q9LJZ5|UBC19_ARATH Ubiquitin-conjugating enzyme E2 19; TrEMBL-Plants: tr|A0A151SCV1|A0A151SCV1_CAJCA Ubiquitin carrier protein E2 19; Found in the gene: LotjaGi2g1v0443400 LjG1.1_chr2 93905390 93906677 +
1 domain prediction
 –