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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016135
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 175 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 5.837s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036909.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr0 11863209 11865412 +
3 domain predictions
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Lj0g3v0063729.1
n.a. Ubiquitin-conjugating enzyme 28 isoform 1 [Theobroma cacao] gi|508719952|gb|EOY11849.1| chr0 21739113 21742134 +
3 domain predictions
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Lj0g3v0115729.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Solanum lycopersicum] gi|460388869|ref|XP_004240086.1| chr0 50870160 50874030 +
3 domain predictions
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Lj0g3v0123939.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Cicer arietinum] gi|502141647|ref|XP_004504577.1| chr0 55610425 55611324 -
3 domain predictions
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Lj0g3v0168999.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Fragaria vesca subsp]. vesca] gi|470116820|ref|XP_004294573.1| chr0 80719086 80722645 -
3 domain predictions
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Lj0g3v0203099.1
n.a. PREDICTED: SUMO-conjugating enzyme SCE1-like [Cicer arietinum] gi|502160781|ref|XP_004511894.1| chr0 100628043 100630600 -
3 domain predictions
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Lj0g3v0245679.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF25-like [Fragaria vesca subsp]. vesca] gi|470142586|ref|XP_004306985.1| chr0 127377152 127378898 +
3 domain predictions
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Lj0g3v0293369.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Cicer arietinum] gi|502157139|ref|XP_004510772.1| chr0 152271888 152275244 -
3 domain predictions
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Lj0g3v0304639.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like [Glycine max] gi|356542276|ref|XP_003539595.1| chr0 158661338 158665394 -
3 domain predictions
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Lj0g3v0326929.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 25-like [Cicer arietinum] gi|502158688|ref|XP_004511247.1| chr0 170885437 170896727 +
3 domain predictions
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Lj0g3v0355129.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Cicer arietinum] gi|502141647|ref|XP_004504577.1| chr0 187040596 187041495 +
3 domain predictions
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Lj0g3v0355759.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like isoform X3 [Cicer arietinum] gi|502122311|ref|XP_004497683.1| chr0 187379645 187382310 +
3 domain predictions
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Lj1g3v0003100.1
n.a. PREDICTED: RWD domain-containing protein 1-like [Glycine max] gi|356526049|ref|XP_003531632.1| chr1 56391 60752 -
3 domain predictions
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Lj1g3v0465660.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 1 [Solanum lycopersicum] gi|460391928|ref|XP_004241570.1| chr1 6223049 6229131 +
3 domain predictions
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Lj1g3v0935410.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356516007|ref|XP_003526688.1| chr1 11741792 11744584 +
3 domain predictions
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Lj1g3v1466220.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| chr1 17549155 17552308 -
3 domain predictions
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Lj1g3v1651360.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356519922|ref|XP_003528617.1| chr1 19854737 19855657 -
3 domain predictions
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Lj1g3v2063210.1
n.a. PREDICTED: protein PEROXIN-4-like [Cicer arietinum] gi|502131980|ref|XP_004501180.1| chr1 24293601 24296517 +
3 domain predictions
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Lj1g3v2097260.2
n.a. Ubiquitin-fold modifier-conjugating enzyme [Medicago truncatula] gi|357466793|ref|XP_003603681.1| chr1 25213127 25214888 +
3 domain predictions
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Lj1g3v2533810.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr1 29047440 29050771 -
3 domain predictions
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Lj1g3v2682550.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max] gi|356560787|ref|XP_003548669.1| chr1 31224785 31229081 -
3 domain predictions
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Lj1g3v4047170.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 22-like [Cicer arietinum] gi|502107487|ref|XP_004493279.1| chr1 47726338 47730179 +
3 domain predictions
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Lj2g3v1496130.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF14-like [Cicer arietinum] gi|502162680|ref|XP_004512580.1| chr2 23690418 23695127 +
3 domain predictions
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Lj2g3v1803100.1
n.a. PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Cicer arietinum] gi|502161064|ref|XP_004512008.1| chr2 27264272 27269393 -
3 domain predictions
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Lj2g3v2089760.1
n.a. Ubiquitin carrier protein [Medicago truncatula] gi|357474045|ref|XP_003607307.1| chr2 31669794 31670709 +
3 domain predictions
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Lj2g3v2447150.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max] gi|356532139|ref|XP_003534631.1| chr2 34554624 34559689 -
3 domain predictions
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Lj2g3v3054240.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356519922|ref|XP_003528617.1| chr2 39246531 39247502 -
3 domain predictions
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Lj3g3v0428400.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 3907415 3911934 +
3 domain predictions
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Lj3g3v0428400.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 35-like [Solanum lycopersicum] gi|460397424|ref|XP_004244267.1| chr3 3907415 3912998 +
3 domain predictions
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Lj3g3v1061310.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr3 14167069 14172311 -
3 domain predictions
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Lj3g3v1666180.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356564644|ref|XP_003550561.1| chr3 21453000 21453516 +
3 domain predictions
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Lj3g3v1666210.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356564644|ref|XP_003550561.1| chr3 21459543 21460229 +
3 domain predictions
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Lj3g3v1953280.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa-like [Fragaria vesca subsp]. vesca] gi|470117130|ref|XP_004294717.1| chr3 25054053 25056060 -
3 domain predictions
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Lj3g3v2563430.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Glycine max] gi|356520176|ref|XP_003528740.1| chr3 31175413 31180075 -
3 domain predictions
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Lj3g3v3188470.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Cicer arietinum] gi|502081948|ref|XP_004487019.1| chr3 39288190 39292474 -
3 domain predictions
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Lj3g3v3453420.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max] gi|356544896|ref|XP_003540883.1| chr3 42219024 42221040 -
3 domain predictions
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Lj3g3v3527360.1
n.a. PREDICTED: protein ELC-like [Cicer arietinum] gi|502144448|ref|XP_004505700.1| chr3 43079977 43082143 -
3 domain predictions
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Lj3g3v3579350.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like isoform X2 [Cicer arietinum] gi|502144341|ref|XP_004505662.1| chr3 43466527 43468277 +
3 domain predictions
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Lj4g3v0109540.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
3 domain predictions
 –
Lj4g3v0109540.2
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 20-like [Cicer arietinum] gi|502118485|ref|XP_004496290.1| chr4 1001889 1004156 -
3 domain predictions
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Lj4g3v0451220.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 24-like [Glycine max] gi|356519588|ref|XP_003528454.1| chr4 6664914 6672209 -
3 domain predictions
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Lj4g3v0548810.1
n.a. ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana] gi|18394416|ref|NP_564011.1| chr4 8940631 8945781 +
3 domain predictions
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Lj4g3v1535160.1
n.a. Ubiquitin-conjugating enzyme E2 5 isoform 1 [Theobroma cacao] gi|508773400|gb|EOY20656.1| chr4 23048876 23055800 -
3 domain predictions
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Lj4g3v1615840.1
n.a. Ubiquiting-conjugating enzyme 2 [Theobroma cacao] gi|508718611|gb|EOY10508.1| chr4 23812415 23816889 +
3 domain predictions
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Lj4g3v2215080.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Glycine max] gi|356519922|ref|XP_003528617.1| chr4 30518394 30518849 +
3 domain predictions
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Lj4g3v2267600.1
n.a. Ubiquitin carrier protein E2 [Medicago truncatula] gi|357478955|ref|XP_003609763.1| chr4 31623585 31625715 -
3 domain predictions
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Lj4g3v2267600.2
n.a. Ubiquitin carrier protein E2 [Medicago truncatula] gi|357478955|ref|XP_003609763.1| chr4 31623585 31644264 -
3 domain predictions
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Lj4g3v2435000.1
n.a. PREDICTED: probable ubiquitin-conjugating enzyme E2 26-like [Glycine max] gi|356510847|ref|XP_003524145.1| chr4 33583874 33593939 +
3 domain predictions
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Lj4g3v2604000.1
n.a. PREDICTED: constitutive photomorphogenesis protein 10-like [Cicer arietinum] gi|502140763|ref|XP_004504327.1| chr4 35015760 35017963 -
3 domain predictions
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Lj4g3v2973630.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max] gi|356513371|ref|XP_003525387.1| chr4 39323121 39325834 -
3 domain predictions
 –