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LotjaGi5g1v0114800.2

Overview

Field Value
Gene ID LotjaGi5g1v0114800
Transcript ID LotjaGi5g1v0114800.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Histone-lysine N-methyltransferase; TAIR: AT5G06620.1 SET domain protein 38; Swiss-Prot: sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4; TrEMBL-Plants: tr|A0A0L9TU48|A0A0L9TU48_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0114800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:23395427..23399260) extracted from Lotus japonicus Gifu genome v1.2.

CACTCATATGTGGGAACTGGCCATTTCACGCTTGAGAAGAAGAAAAATAAGAAGATGGCAGTGACACGCTCACTCCCACT CCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTACCTCCACCACCGCACCGCCACAACACC CTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAACTCGCCCGATCCCTTCCGGTGATCTC ATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCCGTCTGCTATTCCTGCCTCGCCTCTCT GTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACGCTCTAAGGTTTTCCCTTTCCATACCT TATTACAAATTTGAGCAGCTTTTATGCCAATTTTGTAGTTTCATTCAGTCAATATAAATGCATAGTATATGGAGTTTGTA TAAAATGCAGTGAACAAACATGTATTTTTTGCTTAGTTATGTACTTATTTTGAGGTTTTGATATTATTTAGGACTATTAC GATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGTATGAAAGTTTGTTTCTAGCATCAAAAGATTA ATTGGCATCTTCAATTATGATGGGTTTCAACAATCTTCTAAACCTGTGTGAATAAAGATTTATACATCATTTTATTTCCT CGGCGTCATTGGGACTAATTTTGCTCTTTGGTTTTGTATGTAGCCTAATGGTTTCTATGAACCATAATTCTTGAATTCAA AATAAAAGAAAGCACTTGAATCTTTAATACAAATTCTGGCTAAGTTCACTTGTTTGTTTATGGAGTAAGTATGGTACAAT GGAAAGGAGCAAAAAGGACAAAGGAGCTATATGATCATCCCTGATTAGTCGTTTTGAATGTTTGTAACATGTATTGATGG TTTGAAACTTTGGGTGCATTTGAGTAAACGGCTTAATTAAGCGCTGATGGCAATAAGTGCTTATCTCATAAGCACTTATT CATAAGCTAATTTGAGAAACTTTTTTAAAGAAGCTCAAAATAGGTTATGGATAGACACAAGCTCTTATTTATAAGCTATT CTGAACAATTTATGAAAATAACCTCAAACAGCTTATATGTAGGTCATGAGCTTTTTACATAAGTTGTCCCGAACACTTGC ATTTGAGCTTATACTGTAAGATAAGCTCAAATAAGCTCTTCCAAACAGGACCTTTATGTACTATACTCAAAGTTATCTAA TTTAGCAGTTGTCACTTGTCATAACACAACTTCTAATCAATCTAAACATTATGGATTGCCATTACGATACATTGTTGGAC TTTATGTTAACACTTGACACCATAGCTGATTATTTAGTATTTTATTGTTCGTAAGTTAAATCAGTGACACTTATTTGACC TCTTTATGAAGGACCCGTGGTTTGAAATATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAA AAGTGACAGTCTTGACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGGTGAGACATTTTGAAGTTTATG ATTATAATGTCGATAAAAGGTACTAATTATATTAGCTGGCAGATTTCTTCTAAACCCAATAAAAACTAAATCATGAATGA AAGTCAATTAGTTTTCTTGTGAACTTTTGAATGAATGGAACTCTTTGCTATTTTCTTGGTAAAAGTGAAAATGGGAAGGC AGACACCCCAGAGGTAGAAAGTGTGTCTAAACTTATTATGTCCAAATAAATAGGTAGCATTTTCATCTTCCTTTTTTCAC TTATTCCTATCATCCACTAATGTTGGAAAGACAAGCTTTCTGGTGTAAATGGTTGCATTTCTTATAAATTGTTCATTAGA ACAGGAGTAAACAGTTATTGATGTTTAAATTAAAATTTGTAGTGATTTGTGATTGTTTAGCTTTGGAATCAGTATTTTAC TGCTGTAATCTATTTATGCATATGTTCATTTTTCAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGC ACTTATTGCGGATGAACATATTGCTTGTATCCTCCTTATGTCAGGAACATTTTGTTTGTAGTAGATACACAGCACACACA TACATGATGAGTACACAGATATAAATTGATGGACTACTTATCTTGACATTCCAAGTTTTGACCAAGCAATGGTACATTAA TGTTTTGGCCCGAATTCGAATCAATGCATTTCGCATTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAG TTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGGTCAG TATAATTATCTCTTTTCTCAGTTTCTGTCATCAAAATGGCCTAGATTTCTTTTTCTCTTTTTCCATTCTTTTGTTTGCTT GACCAAGCTTTCCAACTTAAGCAGATCTTTTAAATTATTCATAAATCACAGACTGCTGAAAACGATAAAAGTTAATTTTA ACAAGCATTTTGGTTTCATGTTTAAGCGATTTTGTAACTAAATGGTTATAAGTCGCGTACAAATGCGCACAAAGTGAGGG ATAGAGAGTTGACCTCCCTAAACCTTGTAGCTTTTACCTTGAAAAATGAGCAATCAAACTTCTTGGTGTTGCAGATCCTA ATGCACATATTATATGGATAGACAATGCAGATGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTTTGTTATAAATA GTTTTTTCTTTGTTAAAAATGTTTTCCCCTTCTAATTCTGTTGGTTGTCTCATCCAGAAAGTAGTGCATTCAATGATTTT TGAAGAAATTCAACTCATTTTGATGTATTTCTATGTGACAGTTCTAGCTTCTGACTTTTTCTGACAACATACTGGAAGAC TATTTGATGGTTTCTGAAAATATTCTACTTATTTTGATGTATTTACATGTGACAGTTCTGAGATTTTTCTGACAACATAT TGTGTTGATGATTCATATAGCCAACTCTATCTAGGGTGATATGGCTGATTTGTTATGGATCTTGGGAAACTGGTTTTCCT TGCTGATTTGAAATGCTTCCGTGAAACTATCATTGATCAACTTAAGTTTTCTCTTTGGTAAACTGCAGGTGAAGAACTCA GAATCTGCTATATCGATGCCAGCCTGGACCGTGATGCTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAAT TGTAGTAGGTGCTTGCATGGCGATTAGCTGTGATTCTCTAAAGATATTCTCCTAGGTTTTGCAATATAAACTGGTTGTAA CAATGAACTGCGTAGGAAACATTAACAAAGGTTTGTCTTTTTCCAACTTTACTGTGATCTGTATTACTGTTATTGTTATT GTTGGTCTAAAATCCCCCACTGCATTTCCAGGGATGAAGTCTGGAACGAATACTATGAATTCACAATCCCGAGTAATGGA TTTTAATTTGTCATTGTCAATACTCAATAGAGTATACATGCACTCAGTGACTGCAGAGGAGTTATAGTGAAGGGGTTCAA GTTTTGATTTTCATACTGAAACCAATAACAGGGCCAAAAAAGACAACGACATGTAAAACTGCTTCGCTGTAGTTTTGGTA TTCAGTTAAAGGTATATGAACTTTAGTCTTGAACTTAAAGAAAATGATCCTAATATCACAAGCTCCATTAGATTTTGATG GAAATTAAACAAACCGATCACAACGCAGATATTAAGTGTTTAAAATTAGCAATCCACACAATAACGAGTTTTGG 

CDS sequence (LotjaGi5g1v0114800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGTGACACGCTCACTCCCACTCCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTAC CTCCACCACCGCACCGCCACAACACCCTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAA CTCGCCCGATCCCTTCCGGTGATCTCATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCC GTCTGCTATTCCTGCCTCGCCTCTCTGTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACG CTCTAAGGACTATTACGATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGACCCGTGGTTTGAAAT ATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCT GCCAATTTGACACCTGAGATGATTTTAGAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTAT TGCGGATGAACATATTGCTTTTTTGACCAAGCAATGGTACATTAATGTTTTGGCCCGAATTCGAATCAATGCATTTCGCA TTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAAT GCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACATATTATATGGATAGACAATGCAGATGC AAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATG CTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAG 

Protein sequence (LotjaGi5g1v0114800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVTRSLPLRLAISHFTKPFHHFSFSTSTTAPPQHPPPIRVALTDSVGRAVFATRPIPSGDLIHTAQPAVCHPSPSAVHS VCYSCLASLSSSIPQCTPFCSHHCHQRSKDYYDVEMKANWMDFDNYCRTRGLKYPFMVKRLACMVVSGVSKSDSLDILQP ANLTPEMILEMEEEFSLLRSAFTKALIADEHIAFLTKQWYINVLARIRINAFRIELAGGLYEDLLASAVASVEAEAAVGN AVYMLPSFYNHDCDPNAHIIWIDNADAKLKALRDIDEGEELRICYIDASLDRDARRELLFRGFGFQCNCSRCLHGD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_POSITIVE 1 22 22 -
PANTHER 29 312 284 1.9E-120
PANTHER 29 312 284 1.9E-120
SUPERFAMILY 36 312 277 4.97E-25
SMART 37 292 256 1.5E-6
ProSiteProfiles 37 286 250 14.344
Pfam 48 285 238 2.4E-14
Gene3D 50 312 263 5.3E-36
Gene3D 81 129 49 5.3E-36
Gene3D 130 211 82 5.3E-36

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0114800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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