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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0114800 |
| Transcript ID | LotjaGi5g1v0114800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase; TAIR: AT5G06620.1 SET domain protein 38; Swiss-Prot: sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4; TrEMBL-Plants: tr|A0A0L9TU48|A0A0L9TU48_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0114800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23395441..23399171) extracted from Lotus japonicus Gifu genome v1.2.
AACTGGCCATTTCACGCTTGAGAAGAAGAAAAATAAGAAGATGGCAGTGACACGCTCACTCCCACTCCGCTTGGCCATTT CACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTACCTCCACCACCGCACCGCCACAACACCCTCCTCCCATCCGA GTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAACTCGCCCGATCCCTTCCGGTGATCTCATCCACACCGCCCA ACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCCGTCTGCTATTCCTGCCTCGCCTCTCTGTCCTCATCAATAC CCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACGCTCTAAGGTTTTCCCTTTCCATACCTTATTACAAATTTGA GCAGCTTTTATGCCAATTTTGTAGTTTCATTCAGTCAATATAAATGCATAGTATATGGAGTTTGTATAAAATGCAGTGAA CAAACATGTATTTTTTGCTTAGTTATGTACTTATTTTGAGGTTTTGATATTATTTAGGACTATTACGATGTTGAGATGAA AGCGAATTGGATGGACTTTGATAACTATTGCCGGTATGAAAGTTTGTTTCTAGCATCAAAAGATTAATTGGCATCTTCAA TTATGATGGGTTTCAACAATCTTCTAAACCTGTGTGAATAAAGATTTATACATCATTTTATTTCCTCGGCGTCATTGGGA CTAATTTTGCTCTTTGGTTTTGTATGTAGCCTAATGGTTTCTATGAACCATAATTCTTGAATTCAAAATAAAAGAAAGCA CTTGAATCTTTAATACAAATTCTGGCTAAGTTCACTTGTTTGTTTATGGAGTAAGTATGGTACAATGGAAAGGAGCAAAA AGGACAAAGGAGCTATATGATCATCCCTGATTAGTCGTTTTGAATGTTTGTAACATGTATTGATGGTTTGAAACTTTGGG TGCATTTGAGTAAACGGCTTAATTAAGCGCTGATGGCAATAAGTGCTTATCTCATAAGCACTTATTCATAAGCTAATTTG AGAAACTTTTTTAAAGAAGCTCAAAATAGGTTATGGATAGACACAAGCTCTTATTTATAAGCTATTCTGAACAATTTATG AAAATAACCTCAAACAGCTTATATGTAGGTCATGAGCTTTTTACATAAGTTGTCCCGAACACTTGCATTTGAGCTTATAC TGTAAGATAAGCTCAAATAAGCTCTTCCAAACAGGACCTTTATGTACTATACTCAAAGTTATCTAATTTAGCAGTTGTCA CTTGTCATAACACAACTTCTAATCAATCTAAACATTATGGATTGCCATTACGATACATTGTTGGACTTTATGTTAACACT TGACACCATAGCTGATTATTTAGTATTTTATTGTTCGTAAGTTAAATCAGTGACACTTATTTGACCTCTTTATGAAGGAC CCGTGGTTTGAAATATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTG ACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGGTGAGACATTTTGAAGTTTATGATTATAATGTCGAT AAAAGGTACTAATTATATTAGCTGGCAGATTTCTTCTAAACCCAATAAAAACTAAATCATGAATGAAAGTCAATTAGTTT TCTTGTGAACTTTTGAATGAATGGAACTCTTTGCTATTTTCTTGGTAAAAGTGAAAATGGGAAGGCAGACACCCCAGAGG TAGAAAGTGTGTCTAAACTTATTATGTCCAAATAAATAGGTAGCATTTTCATCTTCCTTTTTTCACTTATTCCTATCATC CACTAATGTTGGAAAGACAAGCTTTCTGGTGTAAATGGTTGCATTTCTTATAAATTGTTCATTAGAACAGGAGTAAACAG TTATTGATGTTTAAATTAAAATTTGTAGTGATTTGTGATTGTTTAGCTTTGGAATCAGTATTTTACTGCTGTAATCTATT TATGCATATGTTCATTTTTCAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTATTGCGGATG AACATATTGCTTGTATCCTCCTTATGTCAGGAACATTTTGTTTGTAGTAGATACACAGCACACACATACATGATGAGTAC ACAGATATAAATTGATGGACTACTTATCTTGACATTCCAAGTTTTGACCAAGCAATGGTACATTAATGTTTTGGCCCGAA TTCGAATCAATGCATTTCGCATTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTTGCATCTGTAGAA GCTGAAGCTGCTGTTGGAAATGCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGGTCAGTATAATTATCTCTT TTCTCAGTTTCTGTCATCAAAATGGCCTAGATTTCTTTTTCTCTTTTTCCATTCTTTTGTTTGCTTGACCAAGCTTTCCA ACTTAAGCAGATCTTTTAAATTATTCATAAATCACAGACTGCTGAAAACGATAAAAGTTAATTTTAACAAGCATTTTGGT TTCATGTTTAAGCGATTTTGTAACTAAATGGTTATAAGTCGCGTACAAATGCGCACAAAGTGAGGGATAGAGAGTTGACC TCCCTAAACCTTGTAGCTTTTACCTTGAAAAATGAGCAATCAAACTTCTTGGTGTTGCAGATCCTAATGCACATATTATA TGGATAGACAATGCAGATGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTTTGTTATAAATAGTTTTTTCTTTGTT AAAAATGTTTTCCCCTTCTAATTCTGTTGGTTGTCTCATCCAGAAAGTAGTGCATTCAATGATTTTTGAAGAAATTCAAC TCATTTTGATGTATTTCTATGTGACAGTTCTAGCTTCTGACTTTTTCTGACAACATACTGGAAGACTATTTGATGGTTTC TGAAAATATTCTACTTATTTTGATGTATTTACATGTGACAGTTCTGAGATTTTTCTGACAACATATTGTGTTGATGATTC ATATAGCCAACTCTATCTAGGGTGATATGGCTGATTTGTTATGGATCTTGGGAAACTGGTTTTCCTTGCTGATTTGAAAT GCTTCCGTGAAACTATCATTGATCAACTTAAGTTTTCTCTTTGGTAAACTGCAGGTGAAGAACTCAGAATCTGCTATATC GATGCCAGCCTGGACCGTGATGCTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTGTAGTAGGTGCTT GCATGGCGATTAGCTGTGATTCTCTAAAGATATTCTCCTAGGTTTTGCAATATAAACTGGTTGTAACAATGAACTGCGTA GGAAACATTAACAAAGGTTTGTCTTTTTCCAACTTTACTGTGATCTGTATTACTGTTATTGTTATTGTTGGTCTAAAATC CCCCACTGCATTTCCAGGGATGAAGTCTGGAACGAATACTATGAATTCACAATCCCGAGTAATGGATTTTAATTTGTCAT TGTCAATACTCAATAGAGTATACATGCACTCAGTGACTGCAGAGGAGTTATAGTGAAGGGGTTCAAGTTTTGATTTTCAT ACTGAAACCAATAACAGGGCCAAAAAAGACAACGACATGTAAAACTGCTTCGCTGTAGTTTTGGTATTCAGTTAAAGGTA TATGAACTTTAGTCTTGAACTTAAAGAAAATGATCCTAATATCACAAGCTC
CDS sequence (LotjaGi5g1v0114800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGACACGCTCACTCCCACTCCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTAC CTCCACCACCGCACCGCCACAACACCCTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAA CTCGCCCGATCCCTTCCGGTGATCTCATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCC GTCTGCTATTCCTGCCTCGCCTCTCTGTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACG CTCTAAGGACTATTACGATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGACCCGTGGTTTGAAAT ATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCT GCCAATTTGACACCTGAGATGATTTTAGAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTAT TGCGGATGAACATATTGCTTTTTTGACCAAGCAATGGTACATTAATGTTTTGGCCCGAATTCGAATCAATGCATTTCGCA TTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAAT GCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACATATTATATGGATAGACAATGCAGATGC AAAATTGAAGGCCCTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATCGATGCCAGCCTGGACCGTGATG CTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAG
Protein sequence (LotjaGi5g1v0114800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVTRSLPLRLAISHFTKPFHHFSFSTSTTAPPQHPPPIRVALTDSVGRAVFATRPIPSGDLIHTAQPAVCHPSPSAVHS VCYSCLASLSSSIPQCTPFCSHHCHQRSKDYYDVEMKANWMDFDNYCRTRGLKYPFMVKRLACMVVSGVSKSDSLDILQP ANLTPEMILEMEEEFSLLRSAFTKALIADEHIAFLTKQWYINVLARIRINAFRIELAGGLYEDLLASAVASVEAEAAVGN AVYMLPSFYNHDCDPNAHIIWIDNADAKLKALRDIDEGEELRICYIDASLDRDARRELLFRGFGFQCNCSRCLHGD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 29 | 312 | 284 | 1.9E-120 | – | |
| PANTHER | 29 | 312 | 284 | 1.9E-120 | – | |
| SUPERFAMILY | 36 | 312 | 277 | 4.97E-25 | – | |
| SMART | 37 | 292 | 256 | 1.5E-6 | ||
| ProSiteProfiles | 37 | 286 | 250 | 14.344 | ||
| Pfam | 48 | 285 | 238 | 2.4E-14 | ||
| Gene3D | 50 | 312 | 263 | 5.3E-36 | – | |
| Gene3D | 81 | 129 | 49 | 5.3E-36 | – | |
| Gene3D | 130 | 211 | 82 | 5.3E-36 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0114800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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