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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0213200 |
Transcript ID | LotjaGi5g1v0213200.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | GDP-mannose 3,5-epimerase; TAIR: AT5G28840.1 GDP-D-mannose 3',5'-epimerase; Swiss-Prot: sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1; TrEMBL-Plants: tr|A0A151U593|A0A151U593_CAJCA GDP-mannose 3,5-epimerase; Found in the gene: LotjaGi5g1v0213200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51855705..51858239) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAAGTACTGGAAAAACTGACTATGGTGAATACACCTATGAGAACCTTGAGAGGGAGCTTTACTGGCCATCGGAAAA GCTTAAGATTTCCATCACTGGAGCTGGGGGTTTTATCGCATCGCACATTGCGCGGCGCCTCAAGACTGAGGGGCACTACA TTATTGCCTCGGACTGGAAAAAAAATGAGCACATGAGTGAGGACATGTTTTGTGATGAATTTCATCTTGTTGATCTCAGG GTCATGGATAACTGCCTCAAGGTCACTAAGGGGGTTGATCATGTTTTCAATCTCGCTGCTGATATGGGTGGGATGGGTTT TATTCAGTCCAACCACTCTGTGATTATGTACAACAACACAATGATTAGTTTCAACATGATTGAGGCTGCCAGGATTAATG GCATTAAGAGGTTATCCATCTTGTCCATCATTTCAGTTATGTGTTTTTGGAGCAATTACTGAACAAACATCCACAATGTG ACCTTAGTTTTACTTATATGATGTACTTTACTCATGCCAAAACCTTTCCTTTTTACAGGTTTTTTTATGCTTCTAGTGCT TGTATCTATCCTGAATTCAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGGCTGATGCATGGCCAGCTGAGGTTTGTTT GTGACCTTTAAATGTTTAATATTGCTTTTGGTTCTTCATGTTTACATGATGATTGAGATTGATGTGTTTAATTTTATGAC TTTGTAGCCACAAGATGCATATGGACTAGAGAAGCTCGCAACAGAGGAGTTATGCAAGCACTATAACAAAGATTTTGGAA TTGAATGTCGCATTGGGAGGTTCCATAACATATATGGCCCTTTTGGAACATGGAAAGGCATGTTTTAAGTTAATTTTTTC TTTTGTAGTTTTGTTAATGAGCAAATTACCAGACAATGTTTTTTTTAGTTTTTGTAGACATTTGGATTTAATAAGTTTGT TGTTTTCTCATACAGGTGGAAGGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGACAATCACTTCTACTGACAGATTTGAG ATGTGGGGAGATGGTTTGCAAACGCGATCATTCACCTTCATTGATGAATGTGTTGAAGGTGTTCTTAGGTAGGTCTTGGC TGAATCTTTCCAGGTTTTCTTTGTTTGAATAAAAAAAAGTTATCTTGTGATATTTATGATTGATGATGAAAGCAAAACCA GTAGAGTAAATTTCCATGTTAATCTGTTTTAAGTAGTTGTCAATTTCATTAGTAGGTTTCTTTGCAAAACCCAGTTATTT GAAGTTGTCTTTTTGCAAGAATTTATTAGCTCAGTCAATGCTATTGAATTCAATGACTATGTTGTGTTTGAATATTCGTT GACACATGAAAACGAACGATAGCATGCACTTCAAGTTAAAAAGTGAACGAAACTCTTCTTATGAATTGGGACAAAAGTAC ACACTATAGGAGGGAATGAGGGATTGCTGCCTTTACATAATTTAGGATTTGCCTTATTTAGTTGGGTTGGGGAAGATGAT TCAGTGTTTATCAAGTAATTATGTAGATGTTTTGTCTTTTTCTTCAGTTAATTATTACTTGTGGTAATACTTGAATTTGT CTCCACTTTTGTCTTTAGATTGACTAAATCCGACTTCCGTGAGCCAGTAAATATTGGAAGTGATGAGATGGTCAGCATGA ATGAGATGGCTGAGATTGTTCTCAGCTTTGAGAACAAGAATATTCCTATACATCACATTCCTGGACCAGAGGGTGTTCGT GGTCGTAACTCAGATAATACACTGATAAAAGAGAAACTTGGCTGGGCTCCAACAATGAAATTGAAGGTAATAATGTAATT AATTGGGTGAAAATTACCTTCTTAATCCTATTCCATGTTGTTTATGCAAAGTTTAGTATACGATCTGCTGAGTAGTCATT GATCATAGGTACTGCTGTAATAAAACGAATTCTCCCTTTATCTTCTTCAAATTCAGTAATGGAATGTTGAAGTTTCTACT CAACTTCCCAAGTTGACCTTATCCTCTTTGTCTTAATGAACATCCACAAGATTTTGTTTATACTTAGAGCTGTATCTCAA TTCTGATATTGTAGGATGGGCTGAGGATTACATATTTCTGGATTAAGGAGCAGCTTGACAAGGAGAAGGCTAAAGGTATT GATTTAGCAGTTTATGGAACATCCAAGGTGGTGCAAACCCAAGCCCCAGTTCAACTAGGATCACTTCGTGCTGCAGACGG AAAAGAATGAAGGGGTTAGTTCATGGTCTTAGCACTCATCTAAATGTTTCAAGTGAAGGGTTGGATTTTATTATTGCCAC TTAAGAGGTCACTGGTTATCGTTATTTAGCTGTCAATGTTTTGTAATGTTGGTGGTTCATGTGTAGAGTGGTAGTTTGGT GCTCCTGTTGTATTTTGGTATAAGCCTTTTTGAGGCACTGGTTTGTGCTTACTGCACTAGAAGTTCCAAATTATGAGTTC AAGTCTGAGATTAATAAGTATCCAATTGTTTTCTTCCTTGTGAAGTTCAATGTAA
CDS sequence (LotjaGi5g1v0213200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGTACTGGAAAAACTGACTATGGTGAATACACCTATGAGAACCTTGAGAGGGAGCTTTACTGGCCATCGGAAAA GCTTAAGATTTCCATCACTGGAGCTGGGGGTTTTATCGCATCGCACATTGCGCGGCGCCTCAAGACTGAGGGGCACTACA TTATTGCCTCGGACTGGAAAAAAAATGAGCACATGAGTGAGGACATGTTTTGTGATGAATTTCATCTTGTTGATCTCAGG GTCATGGATAACTGCCTCAAGGTCACTAAGGGGGTTGATCATGTTTTCAATCTCGCTGCTGATATGGGTGGGATGGGTTT TATTCAGTCCAACCACTCTGTGATTATGTACAACAACACAATGATTAGTTTCAACATGATTGAGGCTGCCAGGATTAATG GCATTAAGAGGTTTTTTTATGCTTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAAACTAATGTGAGCTTGAAG GAGGCTGATGCATGGCCAGCTGAGCCACAAGATGCATATGGACTAGAGAAGCTCGCAACAGAGGAGTTATGCAAGCACTA TAACAAAGATTTTGGAATTGAATGTCGCATTGGGAGGTTCCATAACATATATGGCCCTTTTGGAACATGGAAAGGTGGAA GGGAGAAGGCTCCTGCTGCTTTTTGTCGAAAGACAATCACTTCTACTGACAGATTTGAGATGTGGGGAGATGGTTTGCAA ACGCGATCATTCACCTTCATTGATGAATGTGTTGAAGGTGTTCTTAGATTGACTAAATCCGACTTCCGTGAGCCAGTAAA TATTGGAAGTGATGAGATGGTCAGCATGAATGAGATGGCTGAGATTGTTCTCAGCTTTGAGAACAAGAATATTCCTATAC ATCACATTCCTGGACCAGAGGGTGTTCGTGGTCGTAACTCAGATAATACACTGATAAAAGAGAAACTTGGCTGGGCTCCA ACAATGAAATTGAAGGATGGGCTGAGGATTACATATTTCTGGATTAAGGAGCAGCTTGACAAGGAGAAGGCTAAAGGTAT TGATTTAGCAGTTTATGGAACATCCAAGGTGGTGCAAACCCAAGCCCCAGTTCAACTAGGATCACTTCGTGCTGCAGACG GAAAAGAATGA
Protein sequence (LotjaGi5g1v0213200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSTGKTDYGEYTYENLERELYWPSEKLKISITGAGGFIASHIARRLKTEGHYIIASDWKKNEHMSEDMFCDEFHLVDLR VMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETNVSLK EADAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGLQ TRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKNIPIHHIPGPEGVRGRNSDNTLIKEKLGWAP TMKLKDGLRITYFWIKEQLDKEKAKGIDLAVYGTSKVVQTQAPVQLGSLRAADGKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 360 | 360 | 3.1E-248 | – | |
PANTHER | 1 | 360 | 360 | 3.1E-248 | – | |
SUPERFAMILY | 23 | 342 | 320 | 1.61E-76 | ||
CDD | 28 | 348 | 321 | 0.0 | ||
Pfam | 30 | 269 | 240 | 6.8E-45 | ||
Gene3D | 32 | 321 | 290 | 2.7E-117 | – | |
Gene3D | 102 | 334 | 233 | 2.7E-117 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | GDP-mannose 3,5-epimerase activity | Catalysis of the reaction: GDP-mannose = GDP-L-galactose. | ||
Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. | ||
Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. |
Expression pattern of LotjaGi5g1v0213200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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