Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0215600 |
| Transcript ID | LotjaGi5g1v0215600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant D-like protein; TAIR: AT3G22490.1 Seed maturation protein; Swiss-Prot: sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34; TrEMBL-Plants: tr|V7BIJ3|V7BIJ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0215600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:52129264..52131836) extracted from Lotus japonicus Gifu genome v1.2.
TAATCCTTCACCTCTTTATATATACTTTGCATGAAATGCACGCATTAACAAAACACCACCATTGATAGATAAACTGAGAA GAGAAGAGAAGAAGATAGAACATGAGTCAGGAGCAGCCTCAGAGGCCGCAGCACGAGGAAGCTGTCAAGTATGGAGACGT CTTCAACGTCGAGGGAGATCTGAAGAGCAAGCCGGTGGCACCGGTTGACGCTGCCTTGATGCAGAAGGCGGAGAATGCGA TGCTCGGGAAGACACAGAAGGGTGGCGCTGCCGCTGCCATGCAATCGGCGGCGGCGAAGAATGAGAGGGAGGGAGTGGTG GGGCATAATGATATGAGTAAAATTGCCACCGAGGGTGGTGTCAGTTTAACCGAGACTGATGTTTCCGGGAGGCAGGTCAT CACGGAGTCCGTCGGTGGACAGGTTCATTTTCCATCATTACTATTATTGCTTTTCTAATCATTTTAATACGAAGCCTTTA AAAGTTGAAAAAAATGCATGGTAGGATATACAAGGTAGGCAATGTTAGATATTAATTAAATTAAATCAACTATAAGATAA TTATACAACTATTTGGAGGCGGCACGACGATGATGACTTCTGAAGATAATGTTACAACTCTTCATATTAGAAATTGTGGT TTCTTTCAATATGAAAAGTTGTAACAATTATCTTTAGAAGTCATCATTGCAATGCGGCCTTCAAATATCAGTATAATTAT CTCATGGTTAATTTAATTAATATCTAACAATATTAATAGTGCTGTTGTCAGACATACAGCAAGTCTCGACCACCAAAATT AATATTTTTATTTGCATTGGTTTAAAACTCCGTTAAACATTTTCTTTTCACTTTTCGTATTGAATCCCCCCTCGAATTTG GAGGTGTGTGCTTTATATATAAATCTTTTTTACCTATATATGGTCCTACTTTACACAAAATAGTCTATGAATTTGTTGAT TTCTCAAAGACATAGTTCTGTCTTTACATTATCAATAAGATTGGTCTACACCGAATAGGTCTACAAGAGATATTATCAAT AAAGATTAATCATCATCGAATATCACTCTACCAATTATAAAAGATAGGAGTAGATGAGATATAAGTGATAAATGTGAATT TAATATCTTATTTAATCTAATCAAAAGAGTGTAAAGATAGATAGAGAAGAAAAGAGGTCCCAAAGTGTTTCCACGGTTTA GTGGTACACACCTATAATTACATTGATGATCACATTATGAATGCTCAACTAGCTTATATAATTGCAAAATAAGTAATGTG ATTGTGTAAGTGTGGTTATTAGTTATTTAAATGGGTAATTTACATGGAATTTATGTATCCTTTATTTGATGAAATAATGA ATTTCGTGAAATATTTGTCATATTGTGATATTAATTTATGCACACTGTTTTTTTTAGAAATCACAATAAATAATACTGTT TTTTAATGGGTTTCGTAGGTTCTTCACAACCTAGAAGACAGTGTAACAAAAAAAAATCTAGAAGACAAGGGAAGGAAATT TTGTAAATTAGCTGAGGTACTACAAATCTTTGAAGAAAAATTAATGATGATATCAAGTTCAAAAAAAAAATGATAATATC ATGTATATAAATTGTACCAGCTTAAAAGTGGTTAGGTAAATTGATTAATAAGTTAGATAACTCAAGTTGTTCATGTGCCT AATATGTAAACCAATTGGCAACAGGTGGTGGAACAATTTAACCAAAAGGCATCACTGAATACAGTGACACCTCCATCTCT TGTTCAAGAGATGGGCGCCGCCGGAGCTGGTGGAACCGGAGGCATCACCATAGGTGAAGCGCTCGAAGCCACTGTTTTGA CAGCCGGAAAAAAGCCTGTGGAGTGGAGTGACGCGGCTGCAATTCAAGCAGCCGAAGTGAGAGCCACAGGCCGAACCAAC ATTGTCCCCGGAGGTGTTGCCGCGGCGGCGCAGTCAGCAGCTACACTCAATGCTCGAGCAACTAAAGATGAGGAGAAAAC CAAACTTGCTGATATTCTGACGGTACGCGAATTGAATTGAAACCATGAATTTTCAATGAAATTAACCACTTTATCAAAGG AACTAGTGAGTTTTTTTGTTGTTGCAGGATGCGACTTCGAAGTTACCAGCAGACAGAGTAGCAACGAGGAGAGATGCTGA AGGGGTGACGGGTGCAGAAATGAGAAATGATCCGAACCTCACTACTCATCCTGGCGGTGTCTCTGCATCTGTGGCAGCAG CAGCTAGGCTTAACCAGCAAGCCAATCATAACTAAGTCATATACCATTTTCTCATTATATATATAGTAAAGTAATGTGAT GTAATGGTGTGCTTGTTAATTTTGTAATGGAGTCTGCTTTTCTCCCTAGCTAGAATTTTAATTTGTTTTCTCCAATGTAA TGAGAATTTTGAATGAGAAAAAAAAGAGAATAATTATAATGTACTGCCATGTAATTATATCACAGTATTTTGTCATGTTA ATAATTTGAATTAGCAAACAAAATTTAAATCAAATTAGAATCCTAATGAACTGTAACTGCATTCAAATTCTGCACTGCGT TTTGTCGGTTTTC
CDS sequence (LotjaGi5g1v0215600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAGGAGCAGCCTCAGAGGCCGCAGCACGAGGAAGCTGTCAAGTATGGAGACGTCTTCAACGTCGAGGGAGATCT GAAGAGCAAGCCGGTGGCACCGGTTGACGCTGCCTTGATGCAGAAGGCGGAGAATGCGATGCTCGGGAAGACACAGAAGG GTGGCGCTGCCGCTGCCATGCAATCGGCGGCGGCGAAGAATGAGAGGGAGGGAGTGGTGGGGCATAATGATATGAGTAAA ATTGCCACCGAGGGTGGTGTCAGTTTAACCGAGACTGATGTTTCCGGGAGGCAGGTCATCACGGAGTCCGTCGGTGGACA GGTTCTTCACAACCTAGAAGACAGTGTAACAAAAAAAAATCTAGAAGACAAGGGAAGGAAATTTTGTAAATTAGCTGAGG TGGTGGAACAATTTAACCAAAAGGCATCACTGAATACAGTGACACCTCCATCTCTTGTTCAAGAGATGGGCGCCGCCGGA GCTGGTGGAACCGGAGGCATCACCATAGGTGAAGCGCTCGAAGCCACTGTTTTGACAGCCGGAAAAAAGCCTGTGGAGTG GAGTGACGCGGCTGCAATTCAAGCAGCCGAAGTGAGAGCCACAGGCCGAACCAACATTGTCCCCGGAGGTGTTGCCGCGG CGGCGCAGTCAGCAGCTACACTCAATGCTCGAGCAACTAAAGATGAGGAGAAAACCAAACTTGCTGATATTCTGACGGAT GCGACTTCGAAGTTACCAGCAGACAGAGTAGCAACGAGGAGAGATGCTGAAGGGGTGACGGGTGCAGAAATGAGAAATGA TCCGAACCTCACTACTCATCCTGGCGGTGTCTCTGCATCTGTGGCAGCAGCAGCTAGGCTTAACCAGCAAGCCAATCATA ACTAA
Protein sequence (LotjaGi5g1v0215600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQEQPQRPQHEEAVKYGDVFNVEGDLKSKPVAPVDAALMQKAENAMLGKTQKGGAAAAMQSAAAKNEREGVVGHNDMSK IATEGGVSLTETDVSGRQVITESVGGQVLHNLEDSVTKKNLEDKGRKFCKLAEVVEQFNQKASLNTVTPPSLVQEMGAAG AGGTGGITIGEALEATVLTAGKKPVEWSDAAAIQAAEVRATGRTNIVPGGVAAAAQSAATLNARATKDEEKTKLADILTD ATSKLPADRVATRRDAEGVTGAEMRNDPNLTTHPGGVSASVAAAARLNQQANHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 290 | 290 | 1.4E-109 | – | |
| PANTHER | 1 | 290 | 290 | 1.4E-109 | ||
| Pfam | 15 | 69 | 55 | 1.2E-16 | ||
| Pfam | 167 | 225 | 59 | 1.9E-22 | ||
| Pfam | 232 | 291 | 60 | 1.6E-18 | ||
| MobiDBLite | 252 | 276 | 25 | - | – | |
| Coils | 284 | 294 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0215600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…