Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0236500.3

Overview

Field Value
Gene ID LotjaGi5g1v0236500
Transcript ID LotjaGi5g1v0236500.3
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Haloacid dehalogenase-like hydrolase; TAIR: AT3G62040.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q09893|YAI5_SCHPO Uncharacterized protein C24B11.05; TrEMBL-Plants: tr|I3TAQ7|I3TAQ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0236500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:54427913..54429447) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATGCTCACAGGATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGGTATGATTTGTCTAACCCATGCAGTGAACTC TTATATGCTTCACAAGAGTGTATTATTACCTTTCTGTCTTCTGGTTTAATTTAAACCTCTCCTTCCCCTCATCGTTTCTC TCTTTCCTTTTCAACCACTTTAAACCTGTTGTATTACTTAAATGATAAAGAGTGAAAAGGAGTGATATAAATTTCTGGTT CCAAATGTTTGTCACAGATATAGATGACACTCTCTACCCATTGAGCTTAGGTCTCAATTTGGCATGTCGCAAGAACATAC AAGGTATAAACATAAAGTACTAAAGCCAGAACATGAAATATTCTGCTGATCAGATAATCTCATATGTGATAGAATAGAAT AGAAGTATTCTAGTTAACCAATCTTGTTTACAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAAAG ATGTGCCTGGATTTGTATATTGAACATGGGACAACTATGGCAGGATTGAAGGTATAAAGATTTTGCATTGCACTCAGTTT TCTCTTGTTGATATTTTCTTATGAAACACTGATTGACAGTCAATGATATTTCTTATTAAGTTTTAGTCTTGATCTCTACC AGGCCCTTGGTTATGAGTTTGACAATGATGAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGCCA GATTCAGTGTTGAGGAACCTTCTTCTTTCCATGCCTCAGCGTAAAATAGTATGTCAGAAAAAATTCAACATTTGATACTA CTAGTATTAGTTTGATCAATGAAGAGCATTCCATAATATTCAAAGGCTTGAAAATATTCTTTGCAGATATTCACAAACTC AGATCACAAACATGCAGTTGAAGTTCTCAACAGATTGGGCTTGGAAGATTGTTTTGAAGGCATCATATGCTTTGAAACTC TTAATCCTCCCAACATAGATGTATCAGATGATAATCATGTAACAGAGAGTGGACGTTTCAACTCCCACACACAAATCCTC TGCAAACCTTCTGTGGAAGCCTTCGAAGCTGCGATTCGGATTGCAAATGTGGATCCTAAGAAAACAGTAAGATTGATTAC TTACCTACAAAGTGACATGGGAATGGGAAGATTACTTCCTTAATTTGACTAGTTAATTTCAAAACTCTCTGAATCAATTC ATAATAGTTCTCTTCTATCTTCTGCAGATTTTCTTTGATGACAGTACTCGAAATATTGCAAGTGCAAAGGTAGCTGGACT TCACACTGTTATGGTAAGTTATATTTGCTGTTTATGGATCTTATGTCACAATCTGTGTTTGCTTGTAATGCATGCTAAAA ATGAAGTACATACTGATGGCAGGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAATA TCAGAGAAGCATTACCTGAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAGCT ATAGTCCTTGCATAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0236500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGCTCACAGGATTGATGGAGTCAAATACGAGTGCTTGCTTTTTGATATAGATGACACTCTCTACCCATTGAGCTT AGGTCTCAATTTGGCATGTCGCAAGAACATACAAGAGTATATGTTGGAACACTTGCACATTGAAGAAAGTGAAGTGCCAA AGATGTGCCTGGATTTGTATATTGAACATGGGACAACTATGGCAGGATTGAAGGCCCTTGGTTATGAGTTTGACAATGAT GAGTTTCATGCTTATGTGCATGGAAGATTACCATACGAGAAACTGAAGCCAGATTCAGTGTTGAGGAACCTTCTTCTTTC CATGCCTCAGCGTAAAATAATATTCACAAACTCAGATCACAAACATGCAGTTGAAGTTCTCAACAGATTGGGCTTGGAAG ATTGTTTTGAAGGCATCATATGCTTTGAAACTCTTAATCCTCCCAACATAGATGTATCAGATGATAATCATGTAACAGAG AGTGGACGTTTCAACTCCCACACACAAATCCTCTGCAAACCTTCTGTGGAAGCCTTCGAAGCTGCGATTCGGATTGCAAA TGTGGATCCTAAGAAAACAATTTTCTTTGATGACAGTACTCGAAATATTGCAAGTGCAAAGGTAGCTGGACTTCACACTG TTATGGTGGGTCGTTCAGATTTGGTCCCTGGTGCTAACCATGCCCTGAACAGCATTCATAATATCAGAGAAGCATTACCT GAAATATGGGAGGTTGAAGAAGACAGCCAACAGCAAATGATCCAATCCTTAGCAGTGGAAGCTATAGTCCTTGCATAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0236500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAHRIDGVKYECLLFDIDDTLYPLSLGLNLACRKNIQEYMLEHLHIEESEVPKMCLDLYIEHGTTMAGLKALGYEFDND EFHAYVHGRLPYEKLKPDSVLRNLLLSMPQRKIIFTNSDHKHAVEVLNRLGLEDCFEGIICFETLNPPNIDVSDDNHVTE SGRFNSHTQILCKPSVEAFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIREALP EIWEVEEDSQQQMIQSLAVEAIVLA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12725:SF110
4 264 261 3.7E-141 –
PANTHER
PTHR12725
4 264 261 3.7E-141 –
SFLD
SFLDS00003
10 247 238 0.0 –
SFLD
SFLDG01132
10 247 238 0.0
IPR010237
TIGRFAM
TIGR01993
12 216 205 4.0E-72
IPR010237
SUPERFAMILY
SSF56784
13 220 208 1.4E-29
IPR036412
Gene3D
G3DSA:3.40.50.1000
13 236 224 3.9E-48
IPR023214
CDD
cd02604
13 218 206 3.94732E-83
IPR010237
Gene3D
G3DSA:1.10.150.450
24 93 70 3.9E-48 –
TIGRFAM
TIGR01509
171 216 46 3.0E-11
IPR006439

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0236500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…