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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0269500 |
| Transcript ID | LotjaGi5g1v0269500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58281130..58286075) extracted from Lotus japonicus Gifu genome v1.2.
CTAGATGACACCAAATTAGTGAAGAAGAGTTGCTAAGTTTTATGCAGAAGAAAACAATAGCCAGGAAGATTAGTAGGTAT GCTGAGTGAAATGTTTTCTTCTCTTCGTCTCTTTATTGCTTCTGTCTCCCTAAGATACTTCCTTTCTTGGTGTCTTTTGG ATTTTAATTCTTGAGCTTTTTGTTTTTGTTTTTTGACAGACAACAAAAAAGCAAGGAAAAATTTAGCATATTTCAGGTCC TTCTTACTTCATTAATTTTCTTGTGGTTTTTCCCTCCCTCCTTTTGTTAAGAGACAAGGAAACATGCAATTGAATTTTCC CTTTAGCAGAAGGATTCAAACATTTGATGATAAGTTTCACTTTTAGTTCAGATTTGCAAAAACAGCTATGGCGGCGGCTT CCTCATCATCTTCACCATTCTTTGGAATCAGAGAAGAAAATTCAAGTCAGATTACACATCTTCATCAATCCCCCACAGCT GCTTCCTCAGCCGCTCTCACCACCATGCCTCAGAAGAAACGGAGGAATCAACCCGGAACACCAAGCAAGTACCTTAAGAT GAATTTCATTACTTAAAACACACACACACACACACACAAATACAAACACCCTTTTCCATTATCTGTTGGTATACCTTCTC ATTTCTCAAGTACAAAACACAAGGAAACCCTAAATCATGAATATGAGTTAGTGCTCTCTATTTCTTTGATTAACTGAAAA GAAGTTACTATGGTTGAGGTACATGCTTTCCTCCAAGTTTCTCATAAGCATGAGATGAGACTTCTTGTTATAATTTTTTA ATGTTTTTTGTTTTTACTTTTTTTCTACTACTACTCAAATGCATATATGGCTTTCAAAAGGATTAAAAAAAAAACTTAGT TCTTCAATTCTTGTGTATGTTCAAATTCAACAGGCAATTGAAGCATAGAATTTTCTTTTCCTTCAAAAGAAAAGAAATTT TATTCATCCAAAACTTTCTGAGAACATTTCTATTTGATTAAGATATATAGCCAAAACTCCCACCATAGAATTTTCTAAAA TTTGTTGTTTGGCATTATTTTTTTGGTGCAAAAAGGTCCAGATGCAGAAGTGATAGCATTGTCTCCCAAGACCCTAATGG CAACAAACAGGTTCATATGTGAGGTGTGCAATAAGGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACAC AACCTGCCTTGGAAGCTAAAGCAGAAATCTAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGT CCATCATGACCCTTCAAGAGCTTTAGGGGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGT GGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAGTCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAA TATAGATGTGATTGTGGCACCCTCTTCTCAAGGTAACAACAACAACCCAGTTACTCTTAATTACTTAGTCTTGCCTACAT GAAACTTTATACACATGATCAATGTCAGTCATAAATTAATTAAAATTGAAGAGTTTCCAACCTACACTAACAGTATGTTT GGATTAGCTTTTCTTTTATTATAACAAATTTTGAAAATCATTAGAAGCTATTCAGAAAAGTTTCTGCCATAATTGATTCT GACATCAGAATCAATTATAAAATATTTTCCGACCTGCACTAATAGCATGTTCAAATCAGCTTTTTTTTTTCCAAAATTAA TTCTAACACCCCAAAAACTACTTAAATAAGTTTTTCTTTAGATTAAATAAGTTTTTCTTTAGAATTGATTCTGACTAGCT TTAGAATCAATTGTAAAATAATTTTCAAACATGGTAACTCATTTATGAAAAATTAGGGTTTCTTATTGTGTGGTATATTT GATTATTTTACACAAAATAAAAGATTTGATAGCTTGGAGTTTTTTCATTAATTATAACCATCTATCAAAGTGAAATATGT GAATTCAATCTGATAATTAATAAATTAATTGATCAGGGGATATAGTAAGGGGATTCTAGTGTTGCAGCTGAAAGTTATAT ATACTCAAAAACAAAATTGAGTAAAACATGAACAAGAGCTTTCTCCATTTCCTTGTTAGTTTGTGTATGGGTGTTAGTGG AGGTTATATGACAGGAGAATGCTCGCACGTGAAGTACACACTATTCAAATAGAGTACTACAAAAAAAAATTGAAATGTTT TTTGAGAATGAAGGGAAAAAACAAGCAAGTTGAACTTTGGTTATAGGAAACAGTGCCCACATCCATATTATCCACATTCA CGTGTAGTTAAGCAGCATTGTAAGAAGGGGGCACAGGCACAGTGACACTCACTGGGTTTGTTCTCACATGATGAGTTGGA TGCTGGGTTTTTGTTCTCTTTCGTCTTGGCTTCTTGTAACTTAAAAAAAAATATATAATTTTAATTTCTCATCATTAATG TGCCAAATATTATGTCACGTACATTTCTCACATATATTCTGAAAATTAAATGTAGCAATTCTTTGATGGTACGCATGTCT TCAAATGAATTCTCTAGGTAGAAAATTGACAAGTATTGAGGTAGAGTGCATTTATTGAGCTGGCCCCATGTTGTGGTATT TGATTATTGACTTTCATCAAAGTTGCAAATAATTCTCTCTTTTATTGATCAAAGACAGAACTCAAAGTGGCAGTGTGATT TGGATTTCTTGGTTTGTATCATATTTTGGCATAATCCCGGGACCCTCTTCTTCTGTTGTAGAGTTTTTTCCCCTTAATTT CAAAATAGTATTGGTTCCAATTGCAAAGAAATTTAAAAAAATCCCCTTAAATTAAATCAACCTCCACTTTTTTTTATAAT TATTTTTTGCATGTAGCTACTCGTTGGATTTGGTTGGTTATAATTGATGTATCTAGAACAATTGTACATTTCCAAAATTC GTTAGGTTGGACATTCGTTAGGTTACCTATATTCATCATCGAAATAAATGAATGGCTTTCTTTTAGAATTTTAGGTGATG GTGTAATAGCATAGTCGTTTGTTAATGAGGAAAATATAACTACCCTATTCTCTTAGTAAACTCTAAATGCCACATGCATG TAATAATAGTTTAGGCCTTAACTGTCAAAAAAAAAAAGTTTAGGCTTAGTTTATACTTGGCCTGATAAATTCAGCTTTCT ATTGATCCCCTAGTGCTAATTTATAGAACTACAATTGACCTTTGTAAGATCTTGAATGACGAATGACATAAAATATACTT TGGATTTAGATTCGCTCTCGCCTCTCCCAGCCCTTTCCAATCAACGAATTAGCATAATTTCTTTAGTTTTATAAGTTGTT TAATGTTTGAATTAATCTTATTCATTGATTATAGAAATCGAAATACATGTACTAATGTTAATTTCTTTGATTTTTTTTAT ATTTTTGCAGGCGTGATAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCACAAGAAAGTGCAAGACTCCCAAAT GGCTTAACTCCTTTGGGGACTAATTTGTATGGCACCCCCACAAATCACATGACCTTAGGCCTCTCACAAATTGGCACCCA AATTTCTCAGCAGCTTCAAAATCACAACCAAAATGCCACTAACAACAACACCTTGCGCCTTACCGGTGCCGCAAAGTTCG AGCATTTAATCCCATCTCTAAACCAATCCTCATCATTTGGAGTACAACACTCACCACAGCAATCAATCCCTTCCTCAGCT TTCTTCATGACTGAACCAAATCAAACATTTGATCAAGAACCACACCAAGGACCATTTTCAAACAAGAACCTAAATGGTTT GATGCAACTTCCTGATCTTCAAGGCAACAACAACACCAACTCAAATTCTCCTTCTAATCTCTTCAACCTCAGCTTCTTTC CAAATAGCACCATGATGGATCAATTCAACAATCACCAAGGAACAACATCACTCTATATGAACAACAACAACAACAACCCT ATCATCAGTGATCATCATCAAGTTGGTAACTCTGGCTTGTCTTCTTCACTCTTTGGAAACTCATTGCAACATGAAAACAT GTCATCTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCGCCACAACCACCAAGGGTG CAGGTGGTTCTTCTATACTAATTAGAGGAATGAGTACTAGCTCATCAACCTATAATAATAATGATTCCAGATCTGACACT GAAAGGGACCTTGTATCTGATAACAACATTGCCACTTTTGGAAGTGACCAAAGAAGAGGGGAGGGTGTGAATGTGATAAT GAGAACAAACATGGAAAATGACCGCCGCAATCTTCACGGATTGATGATCAACTCTATTACCAACGGGAACAACACATCCA TATTTGGTAACATGCAAGGGAATGAAAAGTTGCCACAAAATCTTGATTTGAGTTTTGGAGGTTCTGACAAGTTGACGTTG GATTTTCTGGGTGTTGGAGGAATGATGAGAAACATCAATAGTGGTGGTGAACATCAACAACAACGTGTGATGGATCCTCA TGACCTAAAATCAGCACAGTCAACTCAGCTACATTTTGGAAGCTCAACTATGCAATGAGGAATTGCAAGATAAGGGAGAG AGGAAGAAAGGAAATTAATGTTACGTATGAACTTGTTTAGTTTTAATTATTATCTTTTTCTCAGAAGAAGTGTAATTGGT ATGTTAGGGTTTCAGTTCTAGAAATTGCAAACATTTTGTATTTTTGTTGAACTAGTCGCATTCCCTTTCCCTCCATCTCT CTTTGACAGTGATAGACATCTACTAATAGATTTACTGTTTTATTGAATTTCATGACGGTAAATTAAAGCTTATGGTAAAG TCAGCTGGTTGTGTACAAAAAACGAGGATGCTCTCAGAATCTTCATAAATTTGCTACATTCCAATG
CDS sequence (LotjaGi5g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACAAACAGGTTCATATGTGAGGTGTGCAATAAGGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGG ACACAACCTGCCTTGGAAGCTAAAGCAGAAATCTAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACAT GTGTCCATCATGACCCTTCAAGAGCTTTAGGGGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAG AAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAGTCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAG AGAATATAGATGTGATTGTGGCACCCTCTTCTCAAGGCGTGATAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAG CACAAGAAAGTGCAAGACTCCCAAATGGCTTAACTCCTTTGGGGACTAATTTGTATGGCACCCCCACAAATCACATGACC TTAGGCCTCTCACAAATTGGCACCCAAATTTCTCAGCAGCTTCAAAATCACAACCAAAATGCCACTAACAACAACACCTT GCGCCTTACCGGTGCCGCAAAGTTCGAGCATTTAATCCCATCTCTAAACCAATCCTCATCATTTGGAGTACAACACTCAC CACAGCAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAACCAAATCAAACATTTGATCAAGAACCACACCAAGGACCA TTTTCAAACAAGAACCTAAATGGTTTGATGCAACTTCCTGATCTTCAAGGCAACAACAACACCAACTCAAATTCTCCTTC TAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCACCATGATGGATCAATTCAACAATCACCAAGGAACAACATCACTCT ATATGAACAACAACAACAACAACCCTATCATCAGTGATCATCATCAAGTTGGTAACTCTGGCTTGTCTTCTTCACTCTTT GGAAACTCATTGCAACATGAAAACATGTCATCTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGG TTCAACCGCCACAACCACCAAGGGTGCAGGTGGTTCTTCTATACTAATTAGAGGAATGAGTACTAGCTCATCAACCTATA ATAATAATGATTCCAGATCTGACACTGAAAGGGACCTTGTATCTGATAACAACATTGCCACTTTTGGAAGTGACCAAAGA AGAGGGGAGGGTGTGAATGTGATAATGAGAACAAACATGGAAAATGACCGCCGCAATCTTCACGGATTGATGATCAACTC TATTACCAACGGGAACAACACATCCATATTTGGTAACATGCAAGGGAATGAAAAGTTGCCACAAAATCTTGATTTGAGTT TTGGAGGTTCTGACAAGTTGACGTTGGATTTTCTGGGTGTTGGAGGAATGATGAGAAACATCAATAGTGGTGGTGAACAT CAACAACAACGTGTGATGGATCCTCATGACCTAAAATCAGCACAGTCAACTCAGCTACATTTTGGAAGCTCAACTATGCA ATGA
Protein sequence (LotjaGi5g1v0269500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEK KWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPNGLTPLGTNLYGTPTNHMT LGLSQIGTQISQQLQNHNQNATNNNTLRLTGAAKFEHLIPSLNQSSSFGVQHSPQQSIPSSAFFMTEPNQTFDQEPHQGP FSNKNLNGLMQLPDLQGNNNTNSNSPSNLFNLSFFPNSTMMDQFNNHQGTTSLYMNNNNNNPIISDHHQVGNSGLSSSLF GNSLQHENMSSPHMSATALLQKAAQMGSTATTTKGAGGSSILIRGMSTSSSTYNNNDSRSDTERDLVSDNNIATFGSDQR RGEGVNVIMRTNMENDRRNLHGLMINSITNGNNTSIFGNMQGNEKLPQNLDLSFGGSDKLTLDFLGVGGMMRNINSGGEH QQQRVMDPHDLKSAQSTQLHFGSSTMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 484 | 484 | 7.5E-184 | – | |
| PANTHER | 1 | 484 | 484 | 7.5E-184 | – | |
| Gene3D | 2 | 29 | 28 | 3.1E-5 | – | |
| SUPERFAMILY | 5 | 102 | 98 | 1.51E-7 | ||
| SMART | 6 | 28 | 23 | 0.0052 | ||
| Pfam | 6 | 28 | 23 | 2.6E-5 | ||
| ProSiteProfiles | 6 | 28 | 23 | 10.99 | ||
| ProSitePatterns | 8 | 28 | 21 | - | ||
| Gene3D | 43 | 130 | 88 | 8.0E-7 | – | |
| SMART | 47 | 77 | 31 | 130.0 | ||
| SMART | 82 | 102 | 21 | 140.0 | ||
| MobiDBLite | 350 | 377 | 28 | - | – | |
| MobiDBLite | 350 | 385 | 36 | - | – | |
| MobiDBLite | 473 | 507 | 35 | - | – | |
| MobiDBLite | 475 | 507 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0269500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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