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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022755
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 49 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.671s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065479.1
n.a. PREDICTED: zinc finger protein MAGPIE-like [Glycine max] gi|356533571|ref|XP_003535336.1| chr0 22769859 22774211 +
2 domain predictions
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Lj0g3v0102879.1
n.a. PREDICTED: zinc finger protein 593-like [Cucumis sativus] gi|449451052|ref|XP_004143276.1| chr0 43822622 43824613 +
2 domain predictions
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Lj0g3v0130119.1
n.a. PREDICTED: G patch domain-containing protein 8-like [Glycine max] gi|356505733|ref|XP_003521644.1| chr0 58961485 58965145 -
2 domain predictions
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Lj0g3v0192159.1
n.a. PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max] gi|356511845|ref|XP_003524632.1| chr0 93887492 93888613 -
2 domain predictions
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Lj0g3v0300749.1
n.a. PREDICTED: zinc finger protein JACKDAW-like [Glycine max] gi|356503710|ref|XP_003520648.1| chr0 156303204 156305789 +
2 domain predictions
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Lj0g3v0315789.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1| chr0 164853250 164859741 +
2 domain predictions
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Lj0g3v0346859.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera] gi|359475946|ref|XP_002278933.2| chr0 181960728 181964503 -
2 domain predictions
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Lj0g3v0351859.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356523372|ref|XP_003530314.1| chr0 185009535 185013423 +
2 domain predictions
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Lj1g3v2348940.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356536786|ref|XP_003536915.1| chr1 27654491 27658672 -
2 domain predictions
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Lj1g3v4921080.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356576787|ref|XP_003556511.1| chr1 59838908 59842695 -
2 domain predictions
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Lj2g3v1779750.1
n.a. zinc finger protein [Morella rubra] gi|427199310|gb|AFY26885.1| chr2 27154631 27157764 +
2 domain predictions
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Lj3g3v0275840.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1| chr3 1729609 1733838 +
2 domain predictions
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Lj4g3v0937730.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Cicer arietinum] gi|502153176|ref|XP_004509244.1| chr4 13788700 13791589 -
2 domain predictions
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Lj4g3v1719700.1
n.a. PREDICTED: dnaJ homolog subfamily C member 21-like [Glycine max] gi|356511845|ref|XP_003524632.1| chr4 24662782 24665557 -
2 domain predictions
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Lj5g3v0405080.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera] gi|359475946|ref|XP_002278933.2| chr5 3959702 3963477 -
2 domain predictions
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Lj5g3v1664160.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356572684|ref|XP_003554496.1| chr5 23740580 23743248 +
2 domain predictions
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Lj5g3v1793480.1
n.a. PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max] gi|356574629|ref|XP_003555448.1| chr5 25534622 25539226 +
2 domain predictions
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Lj5g3v2241010.1
n.a. PREDICTED: zinc finger protein MAGPIE-like [Glycine max] gi|356536373|ref|XP_003536713.1| chr5 32267823 32274233 -
2 domain predictions
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LotjaGi1g1v0747900.1
n.a. Zinc finger matrin-type 2; TAIR: AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2; TrEMBL-Plants: tr|I3SLF9|I3SLF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747900 LjG1.1_chr1 132053079 132056910 +
2 domain predictions
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LotjaGi1g1v0751700.2
n.a. G-patch domain-containing protein; TAIR: AT5G26610.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8; TrEMBL-Plants: tr|I3T461|I3T461_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0751700 LjG1.1_chr1 132389551 132393898 -
2 domain predictions
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LotjaGi1g1v0767200_LC.1
n.a. Zinc finger protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A9T4T1|A9T4T1_PHYPA Predicted protein; Found in the gene: LotjaGi1g1v0767200_LC LjG1.1_chr1 133994251 133994619 +
2 domain predictions
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LotjaGi1g1v0772000.1
n.a. Zinc finger protein; TAIR: AT3G50700.1 indeterminate(ID)-domain 2; Swiss-Prot: sp|Q9SCQ6|IDD2_ARATH Protein indeterminate-domain 2; TrEMBL-Plants: tr|A0A0L9TYR6|A0A0L9TYR6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0772000 LjG1.1_chr1 134448314 134452431 -
2 domain predictions
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LotjaGi2g1v0012500.1
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|K7L204|K7L204_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0012500 LjG1.1_chr2 4402065 4407153 +
2 domain predictions
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LotjaGi2g1v0012500.2
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1D6E319|A0A1D6E319_MAIZE Uncharacterized protein; Found in the gene: LotjaGi2g1v0012500 LjG1.1_chr2 4403015 4403494 +
2 domain predictions
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LotjaGi2g1v0013800.1
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010842 5023086 -
2 domain predictions
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LotjaGi2g1v0013800.2
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010842 5023086 -
2 domain predictions
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LotjaGi2g1v0013800.3
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010859 5023087 -
2 domain predictions
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LotjaGi2g1v0013800.4
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010859 5023087 -
2 domain predictions
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LotjaGi2g1v0013800.5
n.a. Zinc finger family protein; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010859 5023087 -
2 domain predictions
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LotjaGi2g1v0013800.6
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HHK3|A0A1J7HHK3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5010873 5021546 -
2 domain predictions
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LotjaGi2g1v0013800.7
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A068UDX2|A0A068UDX2_COFCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5015232 5015615 -
2 domain predictions
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LotjaGi2g1v0013800.8
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A1D1Z485|A0A1D1Z485_9ARAE Zinc finger protein MAGPIE; Found in the gene: LotjaGi2g1v0013800 LjG1.1_chr2 5019915 5020671 -
2 domain predictions
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LotjaGi2g1v0361900.2
n.a. Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A0A0S3SCV5|A0A0S3SCV5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0361900 LjG1.1_chr2 85934163 85934804 -
2 domain predictions
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LotjaGi3g1v0026400.2
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A061GB64|A0A061GB64_THECC Beta-galactosidase; Found in the gene: LotjaGi3g1v0026400 LjG1.1_chr3 2886399 2886830 -
2 domain predictions
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LotjaGi4g1v0115600.1
n.a. Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A0A1J7HX60|A0A1J7HX60_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115600 LjG1.1_chr4 16753250 16756586 -
2 domain predictions
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LotjaGi4g1v0115600.3
n.a. Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A9T4T1|A9T4T1_PHYPA Predicted protein; Found in the gene: LotjaGi4g1v0115600 LjG1.1_chr4 16755503 16756014 -
2 domain predictions
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LotjaGi4g1v0254500.1
n.a. Chaperone protein DnaJ; TAIR: AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|Q9C911|JJJ1_ARATH DNAJ protein JJJ1 homolog; TrEMBL-Plants: tr|A0A1J7HZV7|A0A1J7HZV7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0254500 LjG1.1_chr4 60865368 60868615 -
2 domain predictions
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LotjaGi5g1v0043100.2
n.a. Zinc finger protein; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A061GB64|A0A061GB64_THECC Beta-galactosidase; Found in the gene: LotjaGi5g1v0043100 LjG1.1_chr5 7262607 7262980 +
2 domain predictions
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LotjaGi5g1v0077200.1
n.a. Zinc finger family protein; TAIR: AT5G03150.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW; TrEMBL-Plants: tr|A0A151TUV7|A0A151TUV7_CAJCA Zinc finger protein JACKDAW; Found in the gene: LotjaGi5g1v0077200 LjG1.1_chr5 12623416 12627094 +
2 domain predictions
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LotjaGi5g1v0082800.1
n.a. Zinc finger family protein; TAIR: AT2G36930.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|B0BLT0|ZN593_XENTR Zinc finger protein 593; TrEMBL-Plants: tr|I3T688|I3T688_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0082800 LjG1.1_chr5 13826596 13828846 +
2 domain predictions
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LotjaGi5g1v0252400.1
n.a. Zinc finger protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A103Y7K5|A0A103Y7K5_CYNCS Actin-binding FH2; Found in the gene: LotjaGi5g1v0252400 LjG1.1_chr5 56123564 56124025 +
2 domain predictions
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LotjaGi5g1v0269500.1
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 LjG1.1_chr5 58281130 58286075 +
2 domain predictions
 –
LotjaGi5g1v0269500.2
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 LjG1.1_chr5 58281130 58286075 +
2 domain predictions
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LotjaGi5g1v0269500.3
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 LjG1.1_chr5 58281142 58286095 +
2 domain predictions
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LotjaGi5g1v0269500.4
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 LjG1.1_chr5 58281180 58286072 +
2 domain predictions
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LotjaGi5g1v0345700.1
n.a. Zinc finger protein, putative; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q9ZUL3|IDD5_ARATH Protein indeterminate-domain 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJ99|A0A1J7HJ99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345700 LjG1.1_chr5 66220943 66228264 -
2 domain predictions
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LotjaGi5g1v0345700.2
n.a. Zinc finger family protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q9ZUL3|IDD5_ARATH Protein indeterminate-domain 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJ99|A0A1J7HJ99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345700 LjG1.1_chr5 66220943 66228264 -
2 domain predictions
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LotjaGi5g1v0345700.3
n.a. Zinc finger protein, putative; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q9ZUL3|IDD5_ARATH Protein indeterminate-domain 5, chloroplastic; TrEMBL-Plants: tr|A0A1J7HJ99|A0A1J7HJ99_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345700 LjG1.1_chr5 66221237 66228256 -
2 domain predictions
 –
LotjaGi5g1v0345700.4
n.a. Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A072VQQ4|A0A072VQQ4_MEDTR C2H2 zinc finger protein, putative; Found in the gene: LotjaGi5g1v0345700 LjG1.1_chr5 66226384 66226873 -
2 domain predictions
 –