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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0273600 |
| Transcript ID | LotjaGi5g1v0273600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr|G7I521|G7I521_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi5g1v0273600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58701285..58705308) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCATTCACACAACTTAATACATTGCATGTAAGTGAGAGAGAAGTAAAAGCTCACTTAGTCCCAAAATAGAAACAGAG AACAATTGGAACAGTTAGCATTATTAATTGTCACCACCCTTTATTTTTCTTCGAAGGTACACTTTGATGCTAATTAAGTA ACAACTATGGCATCCATGAAGCTGGGATCCAAGTCTGAAATGTTCTACCTCTATGGCGAAAGTTGGTAAGTTGTTTCTGA CTTTTGATTGTTGCATGAAGCATAACATGATTGGGTTTCTGTTTTTTCTTACAAACTGTGTTGGATTTAATCAAGTGGAG GTCTATGGCACTGGATTAAAACAAAGTTTGAAGGATTTGGTTATTCTTTGTTATATTGGTACTTTGTAATGTTTTTTCTC CCTTTTGTTTTTTCCTTATTTTGCAGAATTGTGTTCTTTGTTTTTTGGGTTTGGAGTACCCCTTGTAGTCCCTTTGATAA ATTCTTTGCCTATAAAAAAAAAAAAAACCTATATTGGAGAGCTTTCTTCCAAGTCATTGCAAGATGGCTAGGATGGAAAA AATGCTTTATTCTATATGTTGTTTAATTGGGTTAAAAATCTCAGAATCATAAAAGTTCAATTACATTCTACTAATTCTTG GTCTGTTGCAATAGATGGAGCTAGTTGATTTGCTAAACATGTTGTATCAACAGTATTTATCTATTCTATGCATACTTTAT CATATTTCATAAGTAAAATCTAGTTATGGTGTACCTTTAACCTTGTTGACTGTCACTTCCTCATCTCTAGGCTCTGCCAA AGTGGACTTCCAAGTGATGTTATTATTGAAATTGGTGATACATCCTTCCATCTGCACAAGGTGTGTTTTCCTTTGCCAAG AGTTTTTCATGATTTATACTATTGCTGTCTAATAATAATATCTCTAGATATCCTGGTTAAATTTAATGGATAACAAGTGG AGAACATTGTGCTTTCTATGAGATTTGGGATGCTAACAAGGAGATTGAGAAACAACAAATCATAAATGGTGTGTCAATTC AAATAATGGAAGAGTGAAAGTATAGATGTTTCAATGCATTGAAGAGTTATAGCTTCTCCTTTTTCTTTTTATTTAACCTT GTTGATTTTGTTCTAGTGACAATTTATACTACTATTTTATTTTTCAAAGTTTTGTGAAAATAGATGAAACAATATTCAAT AACATGTCCTAAAGATAATTTTGAGAAGCTTTTCTTATCATTTTTTAGTCCCCTTGATGGTACAAGCTTCTTGTAATTTT TAGATTTAGTGCATAAACAATATTCAATAGCAGGTCCTAAAGATAATTTGGAGAAGCTTTTCTTATCATTTTTCAGTCCC CTTGATGGTACAAGCCTCTTGTGATTTTTAGATTTAGTGCATGTTTAGATATACAGGGAAGCCAAAATCACGGTGGACAG AAACAACTTCCCTTAGCTTCTGTGATTGTCCACCACAATTCTGTCTTCACCGGGGTTTTCACTATGTATCCAAACATGCA CTTAATTCAATCCTCACGACATGTCCTTAACATATTTACTTCTTGTTATTACTTGCCATAATGCATGTTCTTAACCATTT TCTTGCTGTGTCACCAGTTTCCACTGATATCAAGAAGCAAAGTACTAGAAGGTTACATGAAAGATCTATCAAGTGAGAAT GAAAAATCTGTTTTGGAGCTTCATGACCTACCAGGTGGAGCAAAGGCCTTTTTGCTTGTGGCTAAGTTCTGTTATGGTGT CAAAATGGAGTTAACTCCATCCAATGTAGTTATCCTAAGATGTGCATCTGATTACCTTCAAATGAGTGAGGACTATGGTG AAGGGAACCTGATCATACAAACTGAAAATTTCCTTAACCACATATATGGATACTGGACTGACACACTCAAGGCTCTTAAA ACATGTGAAGAGGTCTTACCTTTTGCTGAAGAGCTTCACATCACTTCTAGAAGCATCCACTCTCTGGTGCTGAAAGCTGC AGATCCAAGTCTTGTTATTTTGCCAATCTCTTCAGGTCCAACAAGCATTGTTCAGAGTCCAGAGGATCATGGAGATCTGT GGAATGGAATAAGCCTAACATCAAAGGAAACAACAGGTGAAGATTGGTGGTTTGAGGATGTGTGTTCTCTTAGCTTGCCA TTGTATAAGAGATTCATGCTTGGTGCTATTGCAAGACACATGAAGCCTAGAAGAATTGCTGGTTCCCTTGTTTACTATGC AAAGAAGCATATCCCCTCCTTGAACAATGGAAACTCATCTTCCTCTGCTAATTCTTCTAAGTCATCTCTTTCTGAAGCTG ATCAGAGGAATCTCATTGAAGAAATGGTGGAGTTGCTTCCAAATGAAAAGGGGCTAACACCAACCAAGTTTTTACTCAGG AGTTTGAGAACAGCAATGGCTTTGTATGCTAGCTCATCTTGCTGTGCAAGCTTAGAGAAAAGGATTGGTTCCCAATTAGA TGAAGCTGATTTGGAAGATCTTTTGATTCCAAACATTGGCTACTCAATGGAGACTCTTCATGACATTGATTGTGTCCAGA GAATGCTTGATCATTTCATGATTGTGGATCATGATGATGTTGATTCAACTTCTAATGATATAGAGGAAGAGAGGAGATTA GTTGCAGGTCCTCAACGTTTGAGTCCAATGGCAAAAGTGGCTGAATTGATGGATGGTTATTTAGCAGAAGTGGCACCTGA TGTTAACTTGAAGCTGCCAAAGTTTCAATCACTTGCTGCTCTAGTTCCTGATTATGCCAGGACATTGGATGATGGTATAT ACCGTGCAATTGATATATATCTCAAGGTACAAAAAAATAGATCTTTGATTTGCTTTCTGTGTGCACTTAATGTTTTGTTA TACTTAACATGTTTATGAAAAGTTCAATATCACATTAATAAAATATTAAAAAAGTATGTGGATGAGTTTCCCACTGGACA TCAGCAAAAAATGTATACTACTAAATGTCTATATATTTATTTAACATGTAATTGTACACTCAAATTTTGTGCTTGACATA AGTGGCATGGACCATTTTGATATTGAAAGTAAGCCAGATGATCAAGAAAAGTAGAATCAATGTTTATCTTTGAAAGACTT TAATGGATTTCTCAATTTTCAGACTCATCCCTGGATGACAGACTCAGAGAAGGAACAAATCTGCAGGCTCATGAATTGCC AGAAGCTGTCTTTGGAAGCCAGCACCCATGCAGCCCAAAATGAGAGGCTCCCACTTAGAGTTGTTGTCCAAGTCCTGTTC TTTGAACAGCTGAAGCTCAGAACCTCTGTAGCTGGTTGGTTTTTTACTTCTGAAAACCTTGAAAACACACAGAACCTGAG TGGAAACCTTGCTCTGCTGAGGAATATTGATGGGAACACACCACCAAACCCTGTCTTGGCATTTGACAACATGAAAGATA GAGTTTCTGAGCTTGAGAAGGAGTGCTTGACCATGAAGCATGAATTGGAGAAAATGATGAAGTCTAATAAGGGAAGTTGG AACATGATTCTCAGGAAATTGAGTTGCAGGTTGATTCCTAAGCCCTCTAATGGGAAAGTCTCCAAGCCTTGCAGGAAGTC CAAGATTTCACCAGCACAGGTAGAAGAAAATGCTTTGGCAGACCTGGCAGTGAAGTGAAAGGCTTGAAGAGTTTGAAATG TTTTTCTTTTCTTTTTAAGTTTGAAGTTTGAACACCCTCTTAGTTTCCTCTTTAATTTCTCATAGAACTTTGATGCAATT TCCCTTTTGGCTAGGTCATTTTGCTCAGCATAAATGACTATAGCTAATTTGTTATAACTCCCTCTTAATTTTATGTTTAG ATGACAATTTGAAGCATTCATTCTATTATAACTTGTGTTACTCCAGTAATTTCTCTCATGAGAACTTCTGTTTCTAGATT CACAATCTGTGAACTGATTTCTTCCATTAAGTTGGGAGATTTGGCATTTTTGCCTCTAAACTTTTTCATAAGTCCTTGGT TAGTTAGTGTGCTTTGGTTTTCAG
CDS sequence (LotjaGi5g1v0273600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCATGAAGCTGGGATCCAAGTCTGAAATGTTCTACCTCTATGGCGAAAGTTGGCTCTGCCAAAGTGGACTTCC AAGTGATGTTATTATTGAAATTGGTGATACATCCTTCCATCTGCACAAGTTTCCACTGATATCAAGAAGCAAAGTACTAG AAGGTTACATGAAAGATCTATCAAGTGAGAATGAAAAATCTGTTTTGGAGCTTCATGACCTACCAGGTGGAGCAAAGGCC TTTTTGCTTGTGGCTAAGTTCTGTTATGGTGTCAAAATGGAGTTAACTCCATCCAATGTAGTTATCCTAAGATGTGCATC TGATTACCTTCAAATGAGTGAGGACTATGGTGAAGGGAACCTGATCATACAAACTGAAAATTTCCTTAACCACATATATG GATACTGGACTGACACACTCAAGGCTCTTAAAACATGTGAAGAGGTCTTACCTTTTGCTGAAGAGCTTCACATCACTTCT AGAAGCATCCACTCTCTGGTGCTGAAAGCTGCAGATCCAAGTCTTGTTATTTTGCCAATCTCTTCAGGTCCAACAAGCAT TGTTCAGAGTCCAGAGGATCATGGAGATCTGTGGAATGGAATAAGCCTAACATCAAAGGAAACAACAGGTGAAGATTGGT GGTTTGAGGATGTGTGTTCTCTTAGCTTGCCATTGTATAAGAGATTCATGCTTGGTGCTATTGCAAGACACATGAAGCCT AGAAGAATTGCTGGTTCCCTTGTTTACTATGCAAAGAAGCATATCCCCTCCTTGAACAATGGAAACTCATCTTCCTCTGC TAATTCTTCTAAGTCATCTCTTTCTGAAGCTGATCAGAGGAATCTCATTGAAGAAATGGTGGAGTTGCTTCCAAATGAAA AGGGGCTAACACCAACCAAGTTTTTACTCAGGAGTTTGAGAACAGCAATGGCTTTGTATGCTAGCTCATCTTGCTGTGCA AGCTTAGAGAAAAGGATTGGTTCCCAATTAGATGAAGCTGATTTGGAAGATCTTTTGATTCCAAACATTGGCTACTCAAT GGAGACTCTTCATGACATTGATTGTGTCCAGAGAATGCTTGATCATTTCATGATTGTGGATCATGATGATGTTGATTCAA CTTCTAATGATATAGAGGAAGAGAGGAGATTAGTTGCAGGTCCTCAACGTTTGAGTCCAATGGCAAAAGTGGCTGAATTG ATGGATGGTTATTTAGCAGAAGTGGCACCTGATGTTAACTTGAAGCTGCCAAAGTTTCAATCACTTGCTGCTCTAGTTCC TGATTATGCCAGGACATTGGATGATGGTATATACCGTGCAATTGATATATATCTCAAGACTCATCCCTGGATGACAGACT CAGAGAAGGAACAAATCTGCAGGCTCATGAATTGCCAGAAGCTGTCTTTGGAAGCCAGCACCCATGCAGCCCAAAATGAG AGGCTCCCACTTAGAGTTGTTGTCCAAGTCCTGTTCTTTGAACAGCTGAAGCTCAGAACCTCTGTAGCTGGTTGGTTTTT TACTTCTGAAAACCTTGAAAACACACAGAACCTGAGTGGAAACCTTGCTCTGCTGAGGAATATTGATGGGAACACACCAC CAAACCCTGTCTTGGCATTTGACAACATGAAAGATAGAGTTTCTGAGCTTGAGAAGGAGTGCTTGACCATGAAGCATGAA TTGGAGAAAATGATGAAGTCTAATAAGGGAAGTTGGAACATGATTCTCAGGAAATTGAGTTGCAGGTTGATTCCTAAGCC CTCTAATGGGAAAGTCTCCAAGCCTTGCAGGAAGTCCAAGATTTCACCAGCACAGGTAGAAGAAAATGCTTTGGCAGACC TGGCAGTGAAGTGA
Protein sequence (LotjaGi5g1v0273600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASMKLGSKSEMFYLYGESWLCQSGLPSDVIIEIGDTSFHLHKFPLISRSKVLEGYMKDLSSENEKSVLELHDLPGGAKA FLLVAKFCYGVKMELTPSNVVILRCASDYLQMSEDYGEGNLIIQTENFLNHIYGYWTDTLKALKTCEEVLPFAEELHITS RSIHSLVLKAADPSLVILPISSGPTSIVQSPEDHGDLWNGISLTSKETTGEDWWFEDVCSLSLPLYKRFMLGAIARHMKP RRIAGSLVYYAKKHIPSLNNGNSSSSANSSKSSLSEADQRNLIEEMVELLPNEKGLTPTKFLLRSLRTAMALYASSSCCA SLEKRIGSQLDEADLEDLLIPNIGYSMETLHDIDCVQRMLDHFMIVDHDDVDSTSNDIEEERRLVAGPQRLSPMAKVAEL MDGYLAEVAPDVNLKLPKFQSLAALVPDYARTLDDGIYRAIDIYLKTHPWMTDSEKEQICRLMNCQKLSLEASTHAAQNE RLPLRVVVQVLFFEQLKLRTSVAGWFFTSENLENTQNLSGNLALLRNIDGNTPPNPVLAFDNMKDRVSELEKECLTMKHE LEKMMKSNKGSWNMILRKLSCRLIPKPSNGKVSKPCRKSKISPAQVEENALADLAVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 586 | 586 | 4.8E-262 | – | |
| PANTHER | 1 | 586 | 586 | 4.8E-262 | ||
| Gene3D | 18 | 166 | 149 | 7.2E-13 | – | |
| SUPERFAMILY | 18 | 128 | 111 | 7.06E-18 | ||
| CDD | 19 | 122 | 104 | 1.95141E-41 | – | |
| Pfam | 23 | 113 | 91 | 6.3E-7 | ||
| SMART | 28 | 133 | 106 | 3.7E-6 | ||
| ProSiteProfiles | 28 | 97 | 70 | 11.461 | ||
| ProSiteProfiles | 212 | 497 | 286 | 91.674 | ||
| Pfam | 212 | 473 | 262 | 2.1E-90 | ||
| Coils | 540 | 567 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0273600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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