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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00225
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 157 results. Now displaying 1 of 4 with 50 rows per page. This search has taken 0.055s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001959.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Cicer arietinum] gi|502134553|ref|XP_004502161.1| chr0 596128 600991 -
2 domain predictions
1 GO term
Lj0g3v0089599.2
n.a. PREDICTED: ethylene-overproduction protein 1-like [Glycine max] gi|356566016|ref|XP_003551231.1| chr0 36791674 36796392 -
2 domain predictions
1 GO term
Lj0g3v0089739.1
n.a. PREDICTED: BTB/POZ domain-containing protein At2g04740-like, partial [Glycine max] gi|356577448|ref|XP_003556837.1| chr0 36879968 36882619 +
2 domain predictions
1 GO term
Lj0g3v0110849.1
n.a. BTB/POZ domain-containing protein [Medicago truncatula] gi|357450437|ref|XP_003595495.1| chr0 48108795 48111696 -
2 domain predictions
1 GO term
Lj0g3v0122939.1
n.a. POZ/BTB containin G-protein 1 isoform 4 [Theobroma cacao] gi|508703912|gb|EOX95808.1| chr0 54982499 54983466 -
2 domain predictions
1 GO term
Lj0g3v0122939.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356506034|ref|XP_003521793.1| chr0 54982499 54983466 -
2 domain predictions
1 GO term
Lj0g3v0188989.1
n.a. POZ/BTB containin G-protein 1 isoform 1 [Theobroma cacao] gi|508703909|gb|EOX95805.1| chr0 92398759 92399808 +
2 domain predictions
1 GO term
Lj0g3v0188989.2
n.a. BTB domain protein [Nicotiana benthamiana] gi|320526044|gb|ADW41580.1| chr0 92399116 92399808 +
2 domain predictions
1 GO term
Lj0g3v0193919.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356506034|ref|XP_003521793.1| chr0 94645485 94647803 +
2 domain predictions
1 GO term
Lj0g3v0241599.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] gi|356566311|ref|XP_003551376.1| chr0 125332028 125334395 -
2 domain predictions
1 GO term
Lj0g3v0243869.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 126564978 126566851 -
2 domain predictions
1 GO term
Lj0g3v0266519.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr0 138035978 138039468 +
2 domain predictions
1 GO term
Lj0g3v0288819.1
n.a. Root phototropism protein [Medicago truncatula] gi|357443211|ref|XP_003591883.1| chr0 150074146 150077636 -
2 domain predictions
1 GO term
Lj0g3v0290919.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g21780-like isoform X2 [Cicer arietinum] gi|502124004|ref|XP_004498343.1| chr0 151007486 151010334 +
2 domain predictions
1 GO term
Lj0g3v0301399.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Glycine max] gi|356539895|ref|XP_003538428.1| chr0 156633652 156635560 +
2 domain predictions
1 GO term
Lj0g3v0301399.2
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cicer arietinum] gi|502137764|ref|XP_004503177.1| chr0 156633652 156635560 +
2 domain predictions
1 GO term
Lj0g3v0304119.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] gi|356504912|ref|XP_003521238.1| chr0 158413103 158417180 -
2 domain predictions
1 GO term
Lj0g3v0326939.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 170898222 170899504 +
2 domain predictions
1 GO term
Lj0g3v0343689.2
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180197934 180204934 -
2 domain predictions
1 GO term
Lj0g3v0343689.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr0 180200209 180204251 -
2 domain predictions
1 GO term
Lj0g3v0363739.1
n.a. Speckle-type POZ protein-like protein [Medicago truncatula] gi|357461485|ref|XP_003601024.1| chr0 191931321 191935308 +
2 domain predictions
1 GO term
Lj1g3v0053660.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628227 -
2 domain predictions
1 GO term
Lj1g3v0053660.3
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502159272|ref|XP_004511450.1| chr1 619184 628268 -
2 domain predictions
1 GO term
Lj1g3v0785810.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 10280308 10283728 +
2 domain predictions
1 GO term
Lj1g3v0785810.2
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 10280308 10283728 +
2 domain predictions
1 GO term
Lj1g3v0861780.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Cicer arietinum] gi|502135909|ref|XP_004502495.1| chr1 11024217 11025524 -
2 domain predictions
1 GO term
Lj1g3v0898900.1
n.a. PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cicer arietinum] gi|502136060|ref|XP_004502546.1| chr1 11459842 11463668 +
2 domain predictions
1 GO term
Lj1g3v2372430.1
n.a. PREDICTED: ethylene-overproduction protein 1-like [Cicer arietinum] gi|502104260|ref|XP_004492482.1| chr1 27917884 27924145 +
2 domain predictions
1 GO term
Lj1g3v2536090.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Glycine max] gi|356568248|ref|XP_003552325.1| chr1 29179377 29182879 -
2 domain predictions
1 GO term
Lj1g3v3979310.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356571773|ref|XP_003554047.1| chr1 47258558 47264774 +
2 domain predictions
1 GO term
Lj1g3v4154950.1
n.a. BTB/POZ ankyrin repeat protein [Lotus japonicus] gi|343794556|gb|AEM62768.1| chr1 49310131 49313542 -
2 domain predictions
1 GO term
Lj1g3v4155980.1
n.a. BTB/POZ ankyrin repeat protein [Lotus japonicus] gi|343794556|gb|AEM62768.1| chr1 49400388 49403799 +
2 domain predictions
1 GO term
Lj1g3v4433200.1
n.a. PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cicer arietinum] gi|502109543|ref|XP_004493669.1| chr1 51667606 51672748 -
2 domain predictions
1 GO term
Lj1g3v5031310.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356573187|ref|XP_003554745.1| chr1 61307207 61311791 -
2 domain predictions
1 GO term
Lj2g3v1828770.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Cicer arietinum] gi|502153054|ref|XP_004509199.1| chr2 27585981 27588709 -
2 domain predictions
1 GO term
Lj2g3v1968190.1
n.a. Speckle-type POZ protein-like B [Medicago truncatula] gi|357482619|ref|XP_003611596.1| chr2 28592296 28598963 -
2 domain predictions
1 GO term
Lj2g3v1968330.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g49900-like [Glycine max] gi|356495510|ref|XP_003516620.1| chr2 28659502 28663472 +
2 domain predictions
1 GO term
Lj2g3v2448240.1
n.a. PREDICTED: root phototropism protein 2-like [Cicer arietinum] gi|502129677|ref|XP_004500391.1| chr2 34620750 34623163 +
2 domain predictions
1 GO term
Lj2g3v2926360.1
n.a. PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] gi|356499261|ref|XP_003518460.1| chr2 38226028 38230243 +
2 domain predictions
1 GO term
Lj2g3v3073980.1
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39563157 39571182 +
2 domain predictions
1 GO term
Lj2g3v3073980.2
n.a. PREDICTED: regulatory protein NPR3-like [Glycine max] gi|356553915|ref|XP_003545296.1| chr2 39565751 39571182 +
2 domain predictions
1 GO term
Lj2g3v3339000.1
n.a. PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Glycine max] gi|356551632|ref|XP_003544178.1| chr2 42532625 42536142 +
2 domain predictions
1 GO term
Lj3g3v0042050.1
n.a. Kelch-like protein [Medicago truncatula] gi|358346302|ref|XP_003637208.1| chr3 489143 490536 -
2 domain predictions
1 GO term
Lj3g3v0965960.1
n.a. PREDICTED: BTB/POZ domain-containing protein At1g04390-like isoform X1 [Cicer arietinum] gi|502089175|ref|XP_004488836.1| chr3 12913759 12921586 -
2 domain predictions
1 GO term
Lj3g3v2888420.1
n.a. PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Glycine max] gi|356517604|ref|XP_003527477.1| chr3 35764609 35768335 +
2 domain predictions
1 GO term
Lj3g3v3241050.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356520334|ref|XP_003528818.1| chr3 39983559 39985080 +
2 domain predictions
1 GO term
Lj3g3v3241050.2
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356520334|ref|XP_003528818.1| chr3 39983559 39986633 +
2 domain predictions
1 GO term
Lj3g3v3241060.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Glycine max] gi|356573187|ref|XP_003554745.1| chr3 39988451 39990314 +
2 domain predictions
1 GO term
Lj3g3v3688840.1
n.a. PREDICTED: BTB/POZ domain-containing protein POB1-like [Cicer arietinum] gi|502156968|ref|XP_004510713.1| chr3 44740225 44741652 -
2 domain predictions
1 GO term
Lj4g3v0758310.1
n.a. PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max] gi|356563523|ref|XP_003550011.1| chr4 11928783 11933758 +
2 domain predictions
1 GO term