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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0289500 |
| Transcript ID | LotjaGi5g1v0289500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G64740.1 cellulose synthase 6; Swiss-Prot: sp|Q94JQ6|CESA6_ARATH Cellulose synthase A catalytic subunit 6 [UDP]-forming]; TrEMBL-Plants: tr|A0A0L9TZ92|A0A0L9TZ92_PHAAN Cellulose synthase; Found in the gene: LotjaGi5g1v0289500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60632954..60636826) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGAGACGGGTTCATCCTATGCATTTTCCTGATTCAACTGTGCCGGGTAAGTTGTTTTATTTTGTTCTGGTTTGTATG CACACATGCCTTGTTAACCTGTTGTATGTTCAAACTAGTTTCTTTGTCCTCTATCTTATTACAATTAATGGTGGTGGTGA TGCAGTTCAACCCAGAGCTATGGATCCTAAAAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGAA TGGAGGAATGGAAGAAAAAGCAGAATGAAAAACTTGAGGAGGTTAAGGACAAAGGGGGTAAGAACTGTGAAATAAATGGT GACCAGATTGATGACCCTGATTTGCCAAAGTAAGTGCTATTAATAATTCTTATCATGAACTTCAAAAAAAAAAAAATTCT TATCATTACTGTCAAAAAAATAATTCTTATCATTAGTAGATGGAAAATTTGATCCTAACTTGGTCAGGTTTTAGTCTTTA TTTTAGATTGCTCAATACTGCAATTGAAGACTCGTCAATTGCTATCATACACTTGCTTTCTACTTGGTTTAACATATCTG ATTTGAACCTGTGTTAACAGAATGGATGAAGGGAGACAGCCACTGTGGAGGAAGCTTCCTATTAGTCCAAGCAAGATAAA TCCATATCGAATTATAATAGTGCTCCGAATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAACG ATGCATACGCATTGTGGCTTACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTCTGGATCAGTTTCCAAAA TGGTGCCCAGTTGAGCGAGAAACGTACCTTGATCGTTTGTCACTAAGGTATATAAATATTATATCTTTCTACGTTCTTCT CCCATTGTGTGCCTGAGAGATTTCTGGTTCAATTATTGTATAGCTAATTTTATACATCTTAACAGGTATGAGAAAGAAGG AAAGCCATCTGAATTAGCTGATATAGACATATTTGTTAGCACAGTAGATCCTTTGAAAGAGCCTCCACTTATAACTGCAA ACACGGTTCTGTCCATCCTAGCTGTAGATTATCCAGTGGGAAAAGTTTCATGCTATGTGTCCGATGATGGTGCAGCTATG CTCACATTTGAAGCCCTTTCGGAGACATCCGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTTAGCATTGAGCC ACGGGCTCCTGAATGGTATTTTGCTCACACGGTTGACTATCTGAAGCACAAAGTGGATGCATCATTCATAAGGGAGCGCC GCGCTATCAAGGTTTGACTGCTTGTTCTTATTGTGCTTTTTCTTTGCTTCATTTGTGTAGTCTCAAACAAAACCAATGAT GAATTGCATTACATTGCATCTTGTGTTTCTAATGGTACAGAGAGAATATGAAGAGTTCAAAGTGCGGATTAATGCACTGG TTGCAACGGCACAGAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCATGGCCCGGAAACAATGTCCGAGAT CATCCTGGAATGATTCAGGTGAGTAGTATTGTATGATGCAAATTTTTCTCTTTAGTCTAGACTGTGAAAATGCTGAGTCC ATTTGGATAAGATTAAGTGTGATTCACTTGTATAGGTTTTCCTTGGCCAAAATGGTGTTCATGATGTTGAGGGGAATGAG TTACCTCGTCTTGTCTACGTGTCTCGAGAGAAAAGGCCTGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATTCCTT GGTAGAGTCCCTTTATCTCTCTCACATAAACTTTTCTGATTTCTAGTGTCTTTACCCTTTTCATTTTCCCAACCAAATTT TTACAATGTGTTGGTTGATTGTTAAGGTGCGAGTCTCCGCAGTGATATCAAATGCTCCTTACCTACTTAATGTCGATTGT GATCACTACATAAACAACAGTAAGGCTCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATG CTATGTTCAGTTTCCTCAAAGATTTGATGGCATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATG TAAGTAAGAATTCCTTGTTGATTTGTGCTACATATTTATACTTGGTTTGTGATTTAAAGGGAAAGGCTAAGATCTGTTTC AATGTATTTTCATAGATCAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACGGGGTGTGTCTTCAG GCGGCAGGCACTCTATGGATATGATGCCCCTGCTAAGAAGAAACCGCCAACAAAGACATGTAACTGTTTTCCCAAATGGT GCTGCCTGTGTAGTGGATCTCGGAAGAAGAATAGGAATGTGAAAATGAGTCCGAGAAAGAAGATAAAGAATAAGGATGTT ACAAAGCAAATACATGCACTAGAAAGTATTGAAGAGGGAATTGAAGGTACAAGATTCCTCAAATTGGCTATGCCTTTTAA TCTGTGTGTATATGATGCATGGATACTTTAATTTGCTGACGCGATGTATTTGTGTTTCTCTTGAAATCCGAATCACAGGA ATCGACAGTGAGAAGTCATCACTAATGTCACAGCTAAAATTTGAGAAGAAATTCGGGCAATCAGCTGTTTTCATTGCTTC AACTCTTATGGAAGATGGGGGCTTTCTGAAGGGAGCATCTTCTGCATCACTCTTGAAAGAAGCCATCCATGTTATTAGTT GTGGATATGAAGATAAGACAGAGTGGGGGAAAGAGGTAAGTATATGATAATATGACACATTTCATGGCTCTTTATTATTT ATAGTTGTGTAACTTTGCTAAATTCTAATTGTGTTTCAGGTTGGATGGATATATGGTTCTGTCACAGAGGATATTTTAAC AGGTTTCAAGATGCACTGCCACGGTTGGCGATCCGTGTACTGCATGCCTAAAAGGCCTGCTTTCAAGGGTTCAGCTCCCA TAAATCTCTCGGATCGTCTGAACCAAGTTCTCCGGTGGGCACTTGGATCGGTTGAGATCCTGCTGAGCAGGCATTGTCCT ATATGGTATGGATACGGCTGTGGCTTAAAATGGTTGGAGCGCTTATCTTACATAAACTCAGTGGTTTATCCTTTGACATC AATTCCCTTAATTGCCTATTGTACCTTGCCTGCTGTCTGTCTTCTCACCGGGAAGTTCATAGTACCTGAGGTAAGACTAA ACCCTAAACCCAAACATTATTGGATTACTATTTGATTTTACATTCTAGAAATCAATTTAACATGTTTACTTCTTCATTTT GGTGTTACCAGATTAGCAACTATGCTAGCATCATTTTCATGGCACTCTTCATCTTTATAGCTGCAACTAGCATCCTGGAA ATGCAATGGGGTGGTGTTGGCATCCATGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTGGCGCCTCCTCGCATCT CTTTGCTCTCTTTCAAGGATTGCTTAAGGTTCTTGCAGGAGTTAACACAAATTTCACTGTCACATCCAAGGCTGCAGATG ATGGAGAATTTGCTGAGCTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTTATCATAAACATA ATTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGCTATGAGACATGGGGTCCTCTGTTTGGTAAGCTTTTCTT TGCTCTATGGGTCATTGTCCATCTATACCCTTTCCTCAAGGGAGTTATGGGAAAACATGAAGGTGCTCCTACCATAATTT TGGTCTGGTCTATTCTTCTTGCTTCAATCTTCTCACTTCTTTGGGTGCGGATCAACCCGTTTTTGGCTAAAGGTGACATT GTGTTGGAACTTTGTGGGTTGAATTGTGACTAG
CDS sequence (LotjaGi5g1v0289500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTAAAAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGAATGGAGGAATGGAAGAAAAA GCAGAATGAAAAACTTGAGGAGGTTAAGGACAAAGGGGGTAAGAACTGTGAAATAAATGGTGACCAGATTGATGACCCTG ATTTGCCAAAAATGGATGAAGGGAGACAGCCACTGTGGAGGAAGCTTCCTATTAGTCCAAGCAAGATAAATCCATATCGA ATTATAATAGTGCTCCGAATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAACGATGCATACGC ATTGTGGCTTACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTCTGGATCAGTTTCCAAAATGGTGCCCAG TTGAGCGAGAAACGTACCTTGATCGTTTGTCACTAAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGAC ATATTTGTTAGCACAGTAGATCCTTTGAAAGAGCCTCCACTTATAACTGCAAACACGGTTCTGTCCATCCTAGCTGTAGA TTATCCAGTGGGAAAAGTTTCATGCTATGTGTCCGATGATGGTGCAGCTATGCTCACATTTGAAGCCCTTTCGGAGACAT CCGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTTAGCATTGAGCCACGGGCTCCTGAATGGTATTTTGCTCAC ACGGTTGACTATCTGAAGCACAAAGTGGATGCATCATTCATAAGGGAGCGCCGCGCTATCAAGAGAGAATATGAAGAGTT CAAAGTGCGGATTAATGCACTGGTTGCAACGGCACAGAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCAT GGCCCGGAAACAATGTCCGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGCCAAAATGGTGTTCATGATGTTGAGGGG AATGAGTTACCTCGTCTTGTCTACGTGTCTCGAGAGAAAAGGCCTGGATTTGAACACCACAAAAAAGCTGGTGCTATGAA TTCCTTGGTGCGAGTCTCCGCAGTGATATCAAATGCTCCTTACCTACTTAATGTCGATTGTGATCACTACATAAACAACA GTAAGGCTCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTTCAGTTTCCTCAA AGATTTGATGGCATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATATCAACATGAAAGGTTTAGA TGGCATCCAAGGACCAATATATGTAGGAACGGGGTGTGTCTTCAGGCGGCAGGCACTCTATGGATATGATGCCCCTGCTA AGAAGAAACCGCCAACAAAGACATGTAACTGTTTTCCCAAATGGTGCTGCCTGTGTAGTGGATCTCGGAAGAAGAATAGG AATGTGAAAATGAGTCCGAGAAAGAAGATAAAGAATAAGGATGTTACAAAGCAAATACATGCACTAGAAAGTATTGAAGA GGGAATTGAAGGAATCGACAGTGAGAAGTCATCACTAATGTCACAGCTAAAATTTGAGAAGAAATTCGGGCAATCAGCTG TTTTCATTGCTTCAACTCTTATGGAAGATGGGGGCTTTCTGAAGGGAGCATCTTCTGCATCACTCTTGAAAGAAGCCATC CATGTTATTAGTTGTGGATATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTCACAGAGGA TATTTTAACAGGTTTCAAGATGCACTGCCACGGTTGGCGATCCGTGTACTGCATGCCTAAAAGGCCTGCTTTCAAGGGTT CAGCTCCCATAAATCTCTCGGATCGTCTGAACCAAGTTCTCCGGTGGGCACTTGGATCGGTTGAGATCCTGCTGAGCAGG CATTGTCCTATATGGTATGGATACGGCTGTGGCTTAAAATGGTTGGAGCGCTTATCTTACATAAACTCAGTGGTTTATCC TTTGACATCAATTCCCTTAATTGCCTATTGTACCTTGCCTGCTGTCTGTCTTCTCACCGGGAAGTTCATAGTACCTGAGA TTAGCAACTATGCTAGCATCATTTTCATGGCACTCTTCATCTTTATAGCTGCAACTAGCATCCTGGAAATGCAATGGGGT GGTGTTGGCATCCATGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTGGCGCCTCCTCGCATCTCTTTGCTCTCTT TCAAGGATTGCTTAAGGTTCTTGCAGGAGTTAACACAAATTTCACTGTCACATCCAAGGCTGCAGATGATGGAGAATTTG CTGAGCTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTTATCATAAACATAATTGGAGTTATT GTAGGTGTTTCAGATGCAATAAACAATGGCTATGAGACATGGGGTCCTCTGTTTGGTAAGCTTTTCTTTGCTCTATGGGT CATTGTCCATCTATACCCTTTCCTCAAGGGAGTTATGGGAAAACATGAAGGTGCTCCTACCATAATTTTGGTCTGGTCTA TTCTTCTTGCTTCAATCTTCTCACTTCTTTGGGTGCGGATCAACCCGTTTTTGGCTAAAGGTGACATTGTGTTGGAACTT TGTGGGTTGAATTGTGACTAG
Protein sequence (LotjaGi5g1v0289500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKKDLAVYGYGSVAWKERMEEWKKKQNEKLEEVKDKGGKNCEINGDQIDDPDLPKMDEGRQPLWRKLPISPSKINPYR IIIVLRIAVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWCPVERETYLDRLSLRYEKEGKPSELADID IFVSTVDPLKEPPLITANTVLSILAVDYPVGKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAH TVDYLKHKVDASFIRERRAIKREYEEFKVRINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVHDVEG NELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQ RFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPTKTCNCFPKWCCLCSGSRKKNR NVKMSPRKKIKNKDVTKQIHALESIEEGIEGIDSEKSSLMSQLKFEKKFGQSAVFIASTLMEDGGFLKGASSASLLKEAI HVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSR HCPIWYGYGCGLKWLERLSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFIFIAATSILEMQWG GVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYLFKWTSLLIPPLTLLIINIIGVI VGVSDAINNGYETWGPLFGKLFFALWVIVHLYPFLKGVMGKHEGAPTIILVWSILLASIFSLLWVRINPFLAKGDIVLEL CGLNCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 78 | 78 | - | – | |
| PANTHER | 2 | 884 | 883 | 0.0 | – | |
| PANTHER | 2 | 884 | 883 | 0.0 | – | |
| Coils | 18 | 38 | 21 | - | – | |
| MobiDBLite | 33 | 54 | 22 | - | – | |
| Phobius | 79 | 99 | 21 | - | – | |
| Phobius | 100 | 105 | 6 | - | – | |
| Phobius | 106 | 125 | 20 | - | – | |
| Phobius | 126 | 663 | 538 | - | – | |
| Pfam | 159 | 875 | 717 | 0.0 | ||
| SUPERFAMILY | 173 | 697 | 525 | 1.46E-9 | ||
| Gene3D | 307 | 451 | 145 | 4.0E-14 | ||
| TMHMM | 663 | 685 | 23 | - | – | |
| Phobius | 664 | 685 | 22 | - | – | |
| Phobius | 686 | 696 | 11 | - | – | |
| TMHMM | 697 | 719 | 23 | - | – | |
| Phobius | 697 | 715 | 19 | - | – | |
| Phobius | 716 | 734 | 19 | - | – | |
| TMHMM | 734 | 756 | 23 | - | – | |
| Phobius | 735 | 757 | 23 | - | – | |
| Phobius | 758 | 777 | 20 | - | – | |
| Phobius | 778 | 802 | 25 | - | – | |
| TMHMM | 781 | 803 | 23 | - | – | |
| Phobius | 803 | 813 | 11 | - | – | |
| TMHMM | 813 | 835 | 23 | - | – | |
| Phobius | 814 | 835 | 22 | - | – | |
| Phobius | 836 | 846 | 11 | - | – | |
| Phobius | 847 | 867 | 21 | - | – | |
| TMHMM | 848 | 867 | 20 | - | – | |
| Phobius | 868 | 886 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi5g1v0289500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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