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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0314800 |
| Transcript ID | LotjaGi5g1v0314800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoxygenase; TAIR: AT3G22400.1 PLAT/LH2 domain-containing lipoxygenase family protein; Swiss-Prot: sp|Q9LUW0|LOX5_ARATH Linoleate 9S-lipoxygenase 5, chloroplastic; TrEMBL-Plants: tr|I1LE57|I1LE57_SOYBN Lipoxygenase; Found in the gene: LotjaGi5g1v0314800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63295674..63297309) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGCAGGCTCTTGAAAATAACAAGCTGTATATATTAGATCATCATGATGCATTGATGCCATACTTAAGTCGAATAAA CTCTACCAATACAAAGACTTATGCCACTAGAACACTCTTGTTCCTACAAGATGATGGCACATTGAAGCCGCTAGCGATTG AATTAAGCTTACCTCATCCACAAGGGGAGCAACGCGGAGCTGTCAGCAAAGTTTTTACTCCGGCACAAGAAGGAGTAGCA GCTACTGTTTGGCAGTTGGCTAAAGCATATGCTGCTGTGAATGATTCAGGATATCATCAACTGGTTGTCCATTGGTATGA CATCAACAAAACTAATCTCAATAATAGCAAAGCTATTCAAACTTGAAAACAAAATATAGATAACAAGAAAACTGTGACTC TACTGCAGGTTAAACACTCATGCAGTGATTGAACCATTTGTAATAGCTACACACAGGCAATTGAGTGTTCTTCACCCAAT ACACAAGCTCTTGAAGCCACACTTCAAGGATACAATGCATATCAACGCTTTAGCTCGGCACACACTCATCAATGCTGGAG GAGTACTAGAGAAAACCGTTTTCCCTGGCAAATTTGCCTTGGAAATGTCAGCTGTTATATACAAAAACTGGGTATTTCCA GAGCAGGCACTTCCTGCTGATCTGCTTAAGAGGTGAGTCCAGAAAATTAATTATATAGATCCTAATTTCTAATCTATCAA ACAACAACGACAAAAGTCTTATCCTACTAAATAATATTGGCTATATGAATCACACTACGCCATTGAGCTTGATAAAAACG AGATTATGAGGGAAATTTCTAATTTATCAAAAGTAACAAATTGTGATTCTATTTCAATGATTTTCAGAGGAATGGCAGTT CCAGATTCAAGCAGCCCTCATGGACTAAAACTTCTGATAGAGGACTACCCGTTTGCAGTTGACGGCCTAGAAATCTGGGA TGCAATTGAAATCTGGGTGAGGGAATATTGTAACTTCTATTACACATCTGATGACATGGTTGAGAATGACTCTGAACTCC AGCTCTGGTGGAAAGAACTCCGCAATGAGGGTCATGGCGACTTAAAAGACAGGTCCTGGTGGCCTGAGATGAGAACTAAA ATTGAGCTCATTCAATCATGCACTATTATCATATGGGTGGCTTCTGCATTGCATGCAGCTGTGAATTTTGGACAATACCC TTATGCTGGTTACCTCCCCAACCGTCCAACGGTTAGTCGCAGGTTCATGCCAGAGCCAGGTACTCCAGAGTATGAAGAGC TTGAGTCAAACCCTGACTTAGCATTCCTGAAAACAATCACAGCCCAATTCCAAACTCTCCTTGGTGTGTCACTGATAGAA GTTCTGTCCAGGCATTCAACTGAAGAGGTTTACCTTGGGCAGAGTGACAATCCTGAATGGACTTTAGACGCTGAAGCATT GGCGGCGTTCGAGCGATTCTCAAAGAGGCTGTTGGAGATTGAGAGCAATATTATGAAAAGGAACAAGGACACAAGGTTGA AAAACAGAAACGGGCCAGTGAAGTTTCCTTATACCCTTCTGTATCCTAACACCTCAGATTATTCAAGGGAGGGTGGACTC TCTGGGAAGGGAATACCCAATAGTATATCTATCTAA
CDS sequence (LotjaGi5g1v0314800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGGCTCTTGAAAATAACAAGCTGTATATATTAGATCATCATGATGCATTGATGCCATACTTAAGTCGAATAAA CTCTACCAATACAAAGACTTATGCCACTAGAACACTCTTGTTCCTACAAGATGATGGCACATTGAAGCCGCTAGCGATTG AATTAAGCTTACCTCATCCACAAGGGGAGCAACGCGGAGCTGTCAGCAAAGTTTTTACTCCGGCACAAGAAGGAGTAGCA GCTACTGTTTGGCAGTTGGCTAAAGCATATGCTGCTGTGAATGATTCAGGATATCATCAACTGGTTGTCCATTGGTTAAA CACTCATGCAGTGATTGAACCATTTGTAATAGCTACACACAGGCAATTGAGTGTTCTTCACCCAATACACAAGCTCTTGA AGCCACACTTCAAGGATACAATGCATATCAACGCTTTAGCTCGGCACACACTCATCAATGCTGGAGGAGTACTAGAGAAA ACCGTTTTCCCTGGCAAATTTGCCTTGGAAATGTCAGCTGTTATATACAAAAACTGGGTATTTCCAGAGCAGGCACTTCC TGCTGATCTGCTTAAGAGAGGAATGGCAGTTCCAGATTCAAGCAGCCCTCATGGACTAAAACTTCTGATAGAGGACTACC CGTTTGCAGTTGACGGCCTAGAAATCTGGGATGCAATTGAAATCTGGGTGAGGGAATATTGTAACTTCTATTACACATCT GATGACATGGTTGAGAATGACTCTGAACTCCAGCTCTGGTGGAAAGAACTCCGCAATGAGGGTCATGGCGACTTAAAAGA CAGGTCCTGGTGGCCTGAGATGAGAACTAAAATTGAGCTCATTCAATCATGCACTATTATCATATGGGTGGCTTCTGCAT TGCATGCAGCTGTGAATTTTGGACAATACCCTTATGCTGGTTACCTCCCCAACCGTCCAACGGTTAGTCGCAGGTTCATG CCAGAGCCAGGTACTCCAGAGTATGAAGAGCTTGAGTCAAACCCTGACTTAGCATTCCTGAAAACAATCACAGCCCAATT CCAAACTCTCCTTGGTGTGTCACTGATAGAAGTTCTGTCCAGGCATTCAACTGAAGAGGTTTACCTTGGGCAGAGTGACA ATCCTGAATGGACTTTAGACGCTGAAGCATTGGCGGCGTTCGAGCGATTCTCAAAGAGGCTGTTGGAGATTGAGAGCAAT ATTATGAAAAGGAACAAGGACACAAGGTTGAAAAACAGAAACGGGCCAGTGAAGTTTCCTTATACCCTTCTGTATCCTAA CACCTCAGATTATTCAAGGGAGGGTGGACTCTCTGGGAAGGGAATACCCAATAGTATATCTATCTAA
Protein sequence (LotjaGi5g1v0314800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQALENNKLYILDHHDALMPYLSRINSTNTKTYATRTLLFLQDDGTLKPLAIELSLPHPQGEQRGAVSKVFTPAQEGVA ATVWQLAKAYAAVNDSGYHQLVVHWLNTHAVIEPFVIATHRQLSVLHPIHKLLKPHFKDTMHINALARHTLINAGGVLEK TVFPGKFALEMSAVIYKNWVFPEQALPADLLKRGMAVPDSSSPHGLKLLIEDYPFAVDGLEIWDAIEIWVREYCNFYYTS DDMVENDSELQLWWKELRNEGHGDLKDRSWWPEMRTKIELIQSCTIIIWVASALHAAVNFGQYPYAGYLPNRPTVSRRFM PEPGTPEYEELESNPDLAFLKTITAQFQTLLGVSLIEVLSRHSTEEVYLGQSDNPEWTLDAEALAAFERFSKRLLEIESN IMKRNKDTRLKNRNGPVKFPYTLLYPNTSDYSREGGLSGKGIPNSISI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 448 | 448 | 215.909 | ||
| Gene3D | 1 | 76 | 76 | 1.1E-30 | – | |
| SUPERFAMILY | 3 | 448 | 446 | 6.54E-199 | ||
| Pfam | 3 | 426 | 424 | 1.2E-220 | ||
| PANTHER | 3 | 448 | 446 | 6.6E-247 | ||
| PANTHER | 3 | 448 | 446 | 6.6E-247 | – | |
| PRINTS | 34 | 58 | 25 | 4.1E-18 | ||
| Gene3D | 77 | 447 | 371 | 6.8E-164 | – | |
| PRINTS | 81 | 98 | 18 | 1.4E-23 | ||
| ProSitePatterns | 99 | 113 | 15 | - | ||
| PRINTS | 99 | 116 | 18 | 1.4E-23 | ||
| PRINTS | 119 | 139 | 21 | 1.4E-23 | ||
| ProSitePatterns | 126 | 136 | 11 | - | ||
| PRINTS | 356 | 370 | 15 | 4.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0314800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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