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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345200 |
| Transcript ID | LotjaGi5g1v0345200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT3G54260.1 TRICHOME BIREFRINGENCE-LIKE 36; Swiss-Prot: sp|Q940H3|TBL36_ARATH Protein trichome birefringence-like 36; TrEMBL-Plants: tr|A0A0B2PUV5|A0A0B2PUV5_GLYSO Uncharacterized protein; Found in the gene: LotjaGi5g1v0345200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66191214..66193876) extracted from Lotus japonicus Gifu genome v1.2.
CTATGCTCTCTGCACCATGGCAAAACCAGAGCTTCATCAATTGCAGTACTTTTTCTTCTTCTGCAGCATCTTGCTATGCT TCTTCTTCCACTGCACATTGTCACTGATCAACCCTGAGGATGTACCCAGCTGGCTTTCCATGGAAACTGAAGATGTTAAC ATGGTTCAAACTAGCAGCGGTTCTTGGAACAAATGTGATTTCTCAGTTGGAAAATGGGTTTTTGATCAGTCTTACCCTCT TTATGATTCCAACTGCCCTTATCTCAGCACTGCAGTAACTTGTCAAAAGAATGGGAGGCCAGATTCTGACTATGAGAAGT GGAAGTGGAAGCCAGATAGTTGTTCCATGCCAAGGTGTTTATATCAATCTAAACTTGATCATTCTTCACATTGCTACCCT GTTGTTTTCTTAGGATTAAAATCTCTTATGCCACATGACATTGTCTCTTTTTATAAATATTCAGAGGATATCACCTATTT CATATCTATGAAGAGACAGACACAATTTTAACTTTGTAATGTCATATGAAGTTTCAACATGAGAGTATCCTGATCCGTTT TGTTGAATGCTTGCATGATCAATATTTTGTTGCTTGTTTCCTTGCTAGAACAAAAATATTCACATTACTCCCATGTTGTT TATGTATGGAAAATGATTTGTAGACACCTAGATGTGATGTGATAAGAAGAGAGAGATATAGTAAAAAATGTGGTGTATGT GAGATGTCAGTAATATTGGAGTGTTTAAAAATCAGGATTGTTTTCTTATATGCTTGTATGATCAATGTTTTGTGGCTTGG TTGCTAGCTAGACCAAAAATGTAGTTGTTAAAACTCAAAACTCAGTTGTGAAATATTTGAGCTTTATGTACTTGAAACTA GAAAGCTAAGAGAGTTATTAGTATGTAAATCAATTCCACACTTTACCATGGTTGCATCTTCTTATAAATTAGGCTTGTTG ACTACACCTACAGGTTTGATGCACTGAAGTTTCTTGGTAAAATGAGAAGAAAGAGAATAATGTTGGTGGGTGATTCTATA ATGAGAAACCAATGGGAATCTCTAGTTTGCTTAGTTCAAGGAGTTATTCCAACTGATAGGAAAAGGGTCACCTACAATGG TCCTTCAATGGCTTTCCATGCTATGGTAAGAAACCTTATTCTCCTTTTCCTTCTAAAAGTGATTGACTTCATATTGTTCA CTTTCAGGATTTTGAGACCTCAATTGAGTTCTTCTGGGCTCCACTTCTGGTGGAACTGAAGAAAGGGACTGAAAATAAGA GAATTCTACATTTGGATTTGATTGAAGAGAATGCAAGGTATTGGAGGGGAGTTGATGTTCTTGTATTTGATTCAGCTCAT TGGTGGACTCACTCTGGTCAAACGAGCTCGTAAGAAAGCTGTCTCATTCTCTAGTTTCATACTTGATGCAGGATCATTAT TTTCACTCCATAATTTTATTCTCAGTAAATGATGAAATTTCTATAATCTTTTCTTTCAAGTCTTTAAGCATGTATCGATG ATATCTGTTTATCAGTTTCATTACTAATGGATTCAGACTTGAATTGATTAACTACCAGGTGGGATTATTACATGGAGGGA AATAGAATCATCACAAACATGAATCCTATGGTTGCCTATGAGAAAGGACTCAGTACATGGGCAAGGTGGGTGGATCTAAA TTTGGACCCTCGAAGCACCAAAGTTATTTTCAGAAGCATGTCACCTAGGCATAACAGGTACTATCTATTTTTATTGTCTA ATGAAAGCAGACTGAATTTGTTAGGAATAAAATATAAAATCTTTCATGTATCTTCATCCACCAGCTTAGCTTTTGGGATA GTTGGCTCTCATGACATGGTATTAGAGCCTATGTAATCAAGTAGTCTAGAGTTCGACCATTAGTGCCTCCGTTCTTCTAA TAAAAAGCTGAATTTCAGCATAGGTAAGTGGACGTGTGCATTGTCCACGCTTCAAGGCCAAATGAGCTCTTGCGTGAGGA GAACTATCCGAAATTTAATAACCAACCAATCTTGTGTCTTCACCCATCAACTTAAGCTTTTAGGACATTTGGTTCATGAC ATGACACTAGAGTCTCTGCGATCAAGTAATCTAGAGTTCGATCATTAGTTCCCCCTTATTCTGATAAAAGTTTAATTTCA GCACAAAGTAGGTGAGTCGGTGCACTGTCTACGCTTCAAGCCAAAATGGGCTTTTACATGAGGGAATGTGTTCGAGATGC AATATCATACCATTCGCGTGTCTTTGACTCAACAGCTTACATTTTTGGGATTGCTGGTTCATAACAGAATTATCCTTTTT TACTATATTCAGCTCCTCTGTTTTCTTATTTTTTATATGTAGGCTAAATGGCTGGAAATGCTACAACCAGAAGCATCCTA TACAATTTTTCAGCCACCTACATGTTCCTGAACCATTGGTAGTTCTAAGAGGAGTACTAAAGAGAATGAGATTTCAAGTA TATCTGCAAGATGTTACAACCTTGACTGCTTTCAGAAGAGATGGTCATCCATCGGTGTATAGAAAGCCAATAAGTATAGA AAAGAGTCAGAAACCAGGTACAGGACTTTCCTCTGATTGCAGCCATTGGTGTCTCCCTGGTGTGCCTGATATTTGGAATG AGATGCTGAGTGCATGGCTTTAA
CDS sequence (LotjaGi5g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAACCAGAGCTTCATCAATTGCAGTACTTTTTCTTCTTCTGCAGCATCTTGCTATGCTTCTTCTTCCACTGCAC ATTGTCACTGATCAACCCTGAGGATGTACCCAGCTGGCTTTCCATGGAAACTGAAGATGTTAACATGGTTCAAACTAGCA GCGGTTCTTGGAACAAATGTGATTTCTCAGTTGGAAAATGGGTTTTTGATCAGTCTTACCCTCTTTATGATTCCAACTGC CCTTATCTCAGCACTGCAGTAACTTGTCAAAAGAATGGGAGGCCAGATTCTGACTATGAGAAGTGGAAGTGGAAGCCAGA TAGTTGTTCCATGCCAAGGTTTGATGCACTGAAGTTTCTTGGTAAAATGAGAAGAAAGAGAATAATGTTGGTGGGTGATT CTATAATGAGAAACCAATGGGAATCTCTAGTTTGCTTAGTTCAAGGAGTTATTCCAACTGATAGGAAAAGGGTCACCTAC AATGGTCCTTCAATGGCTTTCCATGCTATGGATTTTGAGACCTCAATTGAGTTCTTCTGGGCTCCACTTCTGGTGGAACT GAAGAAAGGGACTGAAAATAAGAGAATTCTACATTTGGATTTGATTGAAGAGAATGCAAGGTATTGGAGGGGAGTTGATG TTCTTGTATTTGATTCAGCTCATTGGTGGACTCACTCTGGTCAAACGAGCTCGTGGGATTATTACATGGAGGGAAATAGA ATCATCACAAACATGAATCCTATGGTTGCCTATGAGAAAGGACTCAGTACATGGGCAAGGTGGGTGGATCTAAATTTGGA CCCTCGAAGCACCAAAGTTATTTTCAGAAGCATGTCACCTAGGCATAACAGGCTAAATGGCTGGAAATGCTACAACCAGA AGCATCCTATACAATTTTTCAGCCACCTACATGTTCCTGAACCATTGGTAGTTCTAAGAGGAGTACTAAAGAGAATGAGA TTTCAAGTATATCTGCAAGATGTTACAACCTTGACTGCTTTCAGAAGAGATGGTCATCCATCGGTGTATAGAAAGCCAAT AAGTATAGAAAAGAGTCAGAAACCAGGTACAGGACTTTCCTCTGATTGCAGCCATTGGTGTCTCCCTGGTGTGCCTGATA TTTGGAATGAGATGCTGAGTGCATGGCTTTAA
Protein sequence (LotjaGi5g1v0345200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKPELHQLQYFFFFCSILLCFFFHCTLSLINPEDVPSWLSMETEDVNMVQTSSGSWNKCDFSVGKWVFDQSYPLYDSNC PYLSTAVTCQKNGRPDSDYEKWKWKPDSCSMPRFDALKFLGKMRRKRIMLVGDSIMRNQWESLVCLVQGVIPTDRKRVTY NGPSMAFHAMDFETSIEFFWAPLLVELKKGTENKRILHLDLIEENARYWRGVDVLVFDSAHWWTHSGQTSSWDYYMEGNR IITNMNPMVAYEKGLSTWARWVDLNLDPRSTKVIFRSMSPRHNRLNGWKCYNQKHPIQFFSHLHVPEPLVVLRGVLKRMR FQVYLQDVTTLTAFRRDGHPSVYRKPISIEKSQKPGTGLSSDCSHWCLPGVPDIWNEMLSAWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 383 | 383 | 4.3E-222 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 383 | 383 | 4.3E-222 | ||
| TMHMM | 12 | 31 | 20 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 383 | 352 | - | – | |
| Pfam | 59 | 109 | 51 | 3.9E-20 | ||
| Pfam | 111 | 381 | 271 | 6.3E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0345200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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