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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0351200 |
| Transcript ID | LotjaGi5g1v0351200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DDB1-and CUL4-associated factor; TAIR: AT4G35140.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8; TrEMBL-Plants: tr|I1LF70|I1LF70_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66686186..66691528) extracted from Lotus japonicus Gifu genome v1.2.
TGGTGCCACGTATAAACGTCCCCCGCCACTTTGACGTGACCATCATCCATCACCATCACCATCACAAATCGAAGGACCCC ACTCTCACTACACCACACCACACCACACCACACCGAACCCATTCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTC TTCTTGTTCTTCTAGGTTCGTTTCCACCGCAACCCATTCATCAATCACCATTCATATTCACAGGGTTTTCATTCTTCGCT TACCCTAATCGTTGTTTTCTTCTTTCTTTCTTTCTATTCATGTTCCGCAGGATGAACAAAAGACCCAGACCCTACGCCAA CAAGGCTCTTCCCGATCTCTGGAATCGCGAACTCGGCGAGCTTCCCGCCCGGAGTTTCCCTCACCGTCTCGGCGGCTCCG AGGTTCAATTTCTCATCGTCTTTTCCTATATATTCATGGATTGCACTCAATTCTTAACACTGATCGATTATTAGGGATTT TGAAATTGAAAACCTAACCTTCTTATCTTGTTCTGGGTCTCGGATTAATAATACCATGCATGTTTGATTCAATTCTCACT CACACAACACAAGCTTCTCCGAATCAATTCTAGAATGATTAAACATGCATTAGGGCTTCTTTTGAATTTACCATTGTTTT ATTTTGACATCTGTGGATATTAATGTGTTCTGTGATGAAATTCTAAGCTTCATTTTGATCAATGTTGTGTGTTTTTAGGA TCTTGTGCTTCGACTTGAACAGTTCACGAAGCTGGAAAAGCACAGAGGTTGTGTGAACACTGTAAGCTTCAATGCAGATG GTGACATTCTGGTGTCGGGTTCTGATGACAGGAGGGTTATTCTCTGGGACTGGCAAACTGGGAAAATTAAGCTGTCTTTC CATTCTGGTCACCAGAACAATGTTTTCCAGGCAAAGATGATGCCTCACTCCGATGATCGAAGCATTGTCACTTGTGCTGC GGATGGACAGGTACACTACACCCTTTTATCTCAAATCCTTTGACTCTACGATTGGATTTTTTCTTGTTCCATTTGAATGT GTTAATAGACCATGTGCATTTCTCATTCATCTATGTCACATTGTGGTTGTGGTGAACGGTCCCGTTCCAAATTTTGGTTT CAGGAGGGGTCGTTTGTTTGCCAAACTTGTTTAAATACAATGTTGTTTTATCATGCAATGTACATGCATAATAAATCTTC TTAGGCCATTTTGATAAAAGAAGTGTGTTTCCTTATGCAACCTCTCAATTTAGGTGAGACATGCTCAAATTCTTGAACAA GGAAAAGTGGAAACCAAGTTATTAGCCAAACATCAAGGACGGGCTCATAAATTGGCTATTGAGCCTGGTAGCCCTCATAT ATTTTATACCTGTGGCGAGGATGGAGTGGTACAGCATGTGAGTAATTGATTCTTTGCTTCCTTTAATTTTTTTATTATTC ATCCTTTAGTTATCTCACATTAAGCATTTTTACAGTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAG CCAATCAATGATCGATGGACTTACATGCCAGTAATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTT TGCAGTTGCTGGGTCTGATGAGTATACTCGACTTTATGATATCCGCAAGTACACGTGGGATGGATCAACTGATTTCGGTC AGCCGACCAACTTCTTTTGCCCTCCACACTTGATTGGGGATGAGCGAGTGGGAATAACAGGCTTGGCCTTTTCTGAACAA AAGGAGCTTCTTGTGTCCTACAATGATGAGTTCATTTACCTTTTTACACATGATATGGGTTTGGGACTGAACCCTGCTGC TCCCGGGTCCCCTGTCTCATTGAATAGTGATGCAAGTGAAATGGGAGGTAGTCATGGATCTGCGGCATCTCCATCAAACA TGGATTCTGATGAGAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGCGAGACAGTAAAGGGTGTTAACTTTTTT GGACCTAATTGTGAGTATGTAGTGAGTGGATCAGACTGTGGTCGGATTTTCATTTGGAAAAAGAAAGGTGGTCAGCTTGT TCGTGTCATGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTA TTGAACACGACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGGTATGAATT CTGTCTTCGTGAGCTAATTATCGCAAGTCAAAACTCAGAAGCACAAAATCATATTATTATCTGAGGATGATATCTTTTAT GTGTAGGAAGCTTTTGTATCCCATATAAATTCCTGACTGTGCCTGTTTCTATAAAAAAACTTTTTTTTAACATAAGAACC CAATAAGTAATGTGAAGATGTTGTCTATAGTTTTTTTGGCCCTCTTCAATCTCAACCAGTTCAAGAACCGAAAGACTAAT ATCACCATAAATTTGAAAACCCTTCCCATTTACTATGTAATGATGGATTCTTTGCGAACCATCCCTTGATCACCAGACAT TGTTGATTTGATTATGTAGCAGTAGCACAGGACAAAATAGTGCTTACTTACCAGCAAAGTTGTTGCCAAGGCAGTATTCA ATATTTTTTTCTAAAAAGAGTAATATGTGCTAGCAGAGTGATTTTTGGAGGGTGATTTATTGAAGGATTGCAGTAGTCAA GACTTGAGAGCTGAGAGCCTAGACATTTTCGTGATGATGTGCTGGCATGTTATGAAAATCTAGGGAACTATTAAAATATG AGTGCCGTGAGAGAGTGAATAGTCAACTTGGTCCGTGAAATATTTTGCTGCTGACAAGTTAGTCCCTGGAAGAAGGAAAA TATGTTAAAAAGTCCTAGAATGTGTAAAACGTCGGTCAAATTAGTCCCTATGGTCGGATTTGGTCAACCAAAACGTCTGT CAAGTTAGACCCTATTGGCGTTTTACACATTCAGGGACTTTTGAGTTTTGATTCTTTTGAATGTATATCCTTCTTTTCAA GACTAACTTGCTAGCGGCAAAGTCTTTCAGAGACCAAATTAACCATTCATTCGCCATGAGAATATCCCTTCTGTGAATAT TTATTTTCCAGAACCGTTTTTGTGGTTGCCTTGCATCACATGATATTGGTATAAAATAAACTTTTAAGGGAAAACTGATT AACTGAGTTCTCTTGCCCGGGCAGTTCATTTGGGGATTCTTGTAGAGCAGTGTTTGAAATGATAGACTGGGTTTATTTGA ATATTTAACCACGGTAACTGGGAACTAGTCTAGGTATCAGCCGTTCAGCATAGTTAAGACCTAATTACTGATTTCATTGA GAACCAGTGTGAACCGTGCTTTTTTGCAGTAAACATCTGAACTGGTACTGTTTCTGTTCGGAACGGTTCCCACTTAGATC ATGTGTCATGCTGAAAATGAGTTGGATACCTTTTGGCATCAGTGCAAAAGACGTAAGCACTCACTTTGAGTCAAAGTGAA CAGATCTCTTTTTATGGATTGGGATGAAAGTCCGTCAAGTTAACTCAATTGATATCCAAAAGTACACTAAAACTGATAGT CTGAAGTTTGAAATGCTGCCCATGGGGAGTTGGGTAGGTTTTATAAATACAAAGCATGATAAATGGTATCTACAAACGAG TGATTGCACATCTTTAAATATTCATCATCTACCTAAAAATATTTACTCACTGATTTAAAAGAAAATTTATTATATTTGTT AGGGAAGTCCTAGAATAACATGATTTGAACACCAATACTGGTCTGCTTATGTTAGATGATAAATCACAGTAGTAATGATA TTTATGTTACATGATTGAACTGTTTGAGCAGCAGAGGAACTAATTTCTCTGTTGGTACTGACTTCTTTGAAAAAGGTTCC CGTGTTTGATCAAATTCATTGGTTTACCATTCATGGTGATGATGATGACGACGACGAAGACGATGATGACAATATGTTTG ATGATGATATGTTTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAG GGGGAGGAGGGGTTGGAGGAGGATGCTGACAACGGTTGTGAGGATGATGATTGTATGGATGATTTTGGCAATGATTGTAA TGATGATGACAATATTGGTGTTGGTGACGATAATAATGATGAAAATGGCAACGATGATAGTTTTTCTGGTGGTTTGTAAT GATGAAATTGATGAAAATTTTGTGTGTCCAACAGAAACCCAGGGCTAGGGGCTGGATGTACCAGATGGCTTCTCCAGAAG ACCTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGCCTAGGACAAATCACAATCCAGATAGCTCAACTACTGACCGA GAACTTCTGGAGATGATATTAACATTCAATGCCAATAGTGACAGTTCAAACCATGATGATGATGATGGTGGTGATGATGA TGATGGAGACGCAACCAGCCAAGAGGACTTGTTCAGTTGAGCCATACACCATGCCTTCAAAATGAATGGTAGCAATTGTA CATAACATAGGATTAAAAATAAGTCGATGGAATCTTGCATACTATGGCTAAACATTAGGATTTATGAATATAACCACCCT TAAGTTTGTATCTGTTGTCATTTTATTGTGATTTTTGTTTATTTTGCGCACAGGTTTAGTTGTTTGTGTTTGTGTGACGT AAATTGATTTTCTGGACCATTTTATCCTTCGGAATCATGTCAAATACCAGATCTTCACCCTTCTAAACCATTTCACATAC CTGATTTGGTAAAATAGGAATCCTAATGAAATATTTGCATGAATTTTGTTGAATTGATTTTAGTTTAAGTGATTAACGGT GAAGTGTTTACTATTTATATTTTGATTCATTAGCGGACAGTATGATTTTTATAGGGTAACACGGTTTGGATTGTATTGAT CAAAATTACTTTTGGGTGTCTAATTATCAAAATAGATTGTAAGGTCTTTAGATATTTATCTAGGTTCTTCTGTATCATAT TTAATTTAATTATCGTTAGCATAATTAAAAGTTAATTATCTTTAGCTAGGTTCAATAACAAATTTAAAAAAAAAAAGTAA GAATTAGCTGGACACACACACTAACTAATAAGAAGAAGAAGATTATGATGATGATAAATCTTTCATAAAATCAAGGACTT TGAAGTTGACTTTTTGTATGAAGTGACTAATAGGCAATACTCAACCTATTTTAATTATTTACATTTAAAATCTAAATTAG CTTCCATATACATTTTGTAATATAATTTTCAATGATTAATTATCTTAACAAATTTATTTTTCC
CDS sequence (LotjaGi5g1v0351200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAAAGACCCAGACCCTACGCCAACAAGGCTCTTCCCGATCTCTGGAATCGCGAACTCGGCGAGCTTCCCGCCCG GAGTTTCCCTCACCGTCTCGGCGGCTCCGAGGATCTTGTGCTTCGACTTGAACAGTTCACGAAGCTGGAAAAGCACAGAG GTTGTGTGAACACTGTAAGCTTCAATGCAGATGGTGACATTCTGGTGTCGGGTTCTGATGACAGGAGGGTTATTCTCTGG GACTGGCAAACTGGGAAAATTAAGCTGTCTTTCCATTCTGGTCACCAGAACAATGTTTTCCAGGCAAAGATGATGCCTCA CTCCGATGATCGAAGCATTGTCACTTGTGCTGCGGATGGACAGGTGAGACATGCTCAAATTCTTGAACAAGGAAAAGTGG AAACCAAGTTATTAGCCAAACATCAAGGACGGGCTCATAAATTGGCTATTGAGCCTGGTAGCCCTCATATATTTTATACC TGTGGCGAGGATGGAGTGGTACAGCATTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTACATGCCAGCCAATCAA TGATCGATGGACTTACATGCCAGTAATCCATCTTAATGCAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCAGTTG CTGGGTCTGATGAGTATACTCGACTTTATGATATCCGCAAGTACACGTGGGATGGATCAACTGATTTCGGTCAGCCGACC AACTTCTTTTGCCCTCCACACTTGATTGGGGATGAGCGAGTGGGAATAACAGGCTTGGCCTTTTCTGAACAAAAGGAGCT TCTTGTGTCCTACAATGATGAGTTCATTTACCTTTTTACACATGATATGGGTTTGGGACTGAACCCTGCTGCTCCCGGGT CCCCTGTCTCATTGAATAGTGATGCAAGTGAAATGGGAGGTAGTCATGGATCTGCGGCATCTCCATCAAACATGGATTCT GATGAGAAAATCACCCCGCAAGTTTTTAAGGGACACAGGAATTGCGAGACAGTAAAGGGTGTTAACTTTTTTGGACCTAA TTGTGAGTATGTAGTGAGTGGATCAGACTGTGGTCGGATTTTCATTTGGAAAAAGAAAGGTGGTCAGCTTGTTCGTGTCA TGGAAGCAGATAAGCATGTTGTGAACTGCATTGAGTCTCATCCTCATACAATGGTTCTTGCAAGCAGTGGTATTGAACAC GACATCAAGATATGGACTCCAAAGGCCCTTGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCCAGGGCTAGGGG CTGGATGTACCAGATGGCTTCTCCAGAAGACCTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGCCTAGGACAAATC ACAATCCAGATAGCTCAACTACTGACCGAGAACTTCTGGAGATGATATTAACATTCAATGCCAATAGTGACAGTTCAAAC CATGATGATGATGATGGTGGTGATGATGATGATGGAGACGCAACCAGCCAAGAGGACTTGTTCAGTTGA
Protein sequence (LotjaGi5g1v0351200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKRPRPYANKALPDLWNRELGELPARSFPHRLGGSEDLVLRLEQFTKLEKHRGCVNTVSFNADGDILVSGSDDRRVILW DWQTGKIKLSFHSGHQNNVFQAKMMPHSDDRSIVTCAADGQVRHAQILEQGKVETKLLAKHQGRAHKLAIEPGSPHIFYT CGEDGVVQHFDLRTGAATELFTCQPINDRWTYMPVIHLNAIAIDPRNPNLFAVAGSDEYTRLYDIRKYTWDGSTDFGQPT NFFCPPHLIGDERVGITGLAFSEQKELLVSYNDEFIYLFTHDMGLGLNPAAPGSPVSLNSDASEMGGSHGSAASPSNMDS DEKITPQVFKGHRNCETVKGVNFFGPNCEYVVSGSDCGRIFIWKKKGGQLVRVMEADKHVVNCIESHPHTMVLASSGIEH DIKIWTPKALEKATLPKNIEQKPRARGWMYQMASPEDLMLQLFSLPRRRPRTNHNPDSSTTDRELLEMILTFNANSDSSN HDDDDGGDDDDGDATSQEDLFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 490 | 485 | 4.4E-264 | – | |
| PANTHER | 6 | 490 | 485 | 4.4E-264 | – | |
| SUPERFAMILY | 41 | 405 | 365 | 7.99E-50 | ||
| SMART | 42 | 81 | 40 | 1.5E-7 | ||
| Pfam | 47 | 81 | 35 | 6.3E-6 | ||
| ProSiteProfiles | 49 | 180 | 132 | 18.589 | ||
| ProSiteProfiles | 49 | 90 | 42 | 15.321 | ||
| SMART | 84 | 126 | 43 | 2.6 | ||
| SMART | 131 | 171 | 41 | 1.0 | ||
| SMART | 191 | 224 | 34 | 32.0 | ||
| SMART | 241 | 280 | 40 | 270.0 | ||
| MobiDBLite | 296 | 321 | 26 | - | – | |
| SMART | 322 | 364 | 43 | 0.62 | ||
| Pfam | 327 | 364 | 38 | 0.021 | ||
| ProSiteProfiles | 344 | 415 | 72 | 10.812 | ||
| SMART | 367 | 406 | 40 | 0.013 | ||
| MobiDBLite | 471 | 502 | 32 | - | – | |
| MobiDBLite | 482 | 496 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0351200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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