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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0012100 |
| Transcript ID | LotjaGi6g1v0012100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT4G13580.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q9T0H8|DIR18_ARATH Dirigent protein 18; TrEMBL-Plants: tr|A0A072VHX9|A0A072VHX9_MEDTR Dirigent protein; Found in the gene: LotjaGi6g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2298188..2298889) extracted from Lotus japonicus Gifu genome v1.2.
TTGGCAACAACTATAGCAGCAATTGACCCTCTTGCAGCCACAGGGAAAGAACCTATCATTGAGCTTTACATGCATGACAT TCTTGGCGGAAGTAACCCAACAGCTCGACCGGTAACTGGGTTGCTTGGGAACATATACAGTGGCCAAGTACCCTTTGCAA CCCCAGTAGGATTCAACCTACCACAAGGTGGCATTCCCATCCCCAATGCCAATGGTGCTGTTCCCACTGTCAATGGGGTT ACTGGTATCCCACTAGGAACTGGTTTGGCTGGTACTACCTTTGCACCAAACTCAGGCAACAACAACCAAAACAATGCTCA GCTGCAGTTAGGACCTGATGGACTGGGCCTAGGTTTCGGGACAATCACAGTAATCGATGATATACTTACCTCTCAACCTG AGTTGGGTTCCCAAATAGTTGGTAAGGCTCAAGGAGTGTATGTGGCGAGTTCCGCAGATGGGACCAGACAGATGATGGCG TTCACAGCCCTGTTCGAAGGAGGGGAATATGGGGATAGCTTGAACTTCTATGGCCTGTACAAGATAGGAAGCACCATGTC ACAATTATCAGTAATAGGGGGAACAGGAAAGTTCAAGAATGCAAGAGGGTTTGCAGAACTGAGATCTCTTATCCCACCAG GACAGATTGCTACAGATGGTGCTGAGACATTGCTGAGGATGACTATCCATTTGAAGTACTAA
CDS sequence (LotjaGi6g1v0012100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGACATTCTTGGCGGAAGTAACCCAACAGCTCGACCGGTAACTGGGTTGCTTGGGAACATATACAGTGGCCAAAT CCCCAATGCCAATGGTGCTGTTCCCACTGTCAATGGGGTTACTGGTATCCCACTAGGAACTGGTTTGGCTGGTACTACCT TTGCACCAAACTCAGGCAACAACAACCAAAACAATGCTCAGCTGCAGTTAGGACCTGATGGACTGGGCCTAGGTTTCGGG ACAATCACAGTAATCGATGATATACTTACCTCTCAACCTGAGTTGGGTTCCCAAATAGTTGGTAAGGCTCAAGGAGTGTA TGTGGCGAGTTCCGCAGATGGGACCAGACAGATGATGGCGTTCACAGCCCTGTTCGAAGGAGGGGAATATGGGGATAGCT TGAACTTCTATGGCCTGTACAAGATAGGAAGCACCATGTCACAATTATCAGTAATAGGGGGAACAGGAAAGTTCAAGAAT GCAAGAGGGTTTGCAGAACTGAGATCTCTTATCCCACCAGGACAGATTGCTACAGATGGTGCTGAGACATTGCTGAGGAT GACTATCCATTTGAAGTACTAA
Protein sequence (LotjaGi6g1v0012100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHDILGGSNPTARPVTGLLGNIYSGQIPNANGAVPTVNGVTGIPLGTGLAGTTFAPNSGNNNQNNAQLQLGPDGLGLGFG TITVIDDILTSQPELGSQIVGKAQGVYVASSADGTRQMMAFTALFEGGEYGDSLNFYGLYKIGSTMSQLSVIGGTGKFKN ARGFAELRSLIPPGQIATDGAETLLRMTIHLKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 3.2E-113 | – | |
| PANTHER | 1 | 193 | 193 | 3.2E-113 | – | |
| Pfam | 71 | 190 | 120 | 1.9E-29 | ||
| Gene3D | 85 | 180 | 96 | 4.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Jasmonic acid biosynthetic process | The chemical reactions and pathways resulting in the formation of jasmonic acid, a fatty acid derivative. | ||
| Molecular function | Allene-oxide cyclase activity | Catalysis of the reaction: (9Z,13S,15Z)-12,13-epoxyoctadeca-9,11,15-trienoate = (15Z)-12-oxophyto-10,15-dienoate. |
Expression pattern of LotjaGi6g1v0012100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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