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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0015700 |
| Transcript ID | LotjaGi6g1v0015700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium dependent protein kinase; TAIR: AT3G10660.1 calmodulin-domain protein kinase cdpk isoform 2; Swiss-Prot: sp|Q2QQR2|CDPKR_ORYSJ Calcium-dependent protein kinase 27; TrEMBL-Plants: tr|A0A067EBX2|A0A067EBX2_CITSI Uncharacterized protein; Found in the gene: LotjaGi6g1v0015700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2788370..2791567) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTAAGATGATAGATGCAGACAATAGTGGTCAAATCACCTTTGAGGAACTTAAAGCTGGTTTGAAAAGAGTGGGCGC TAATCTAAATGAGTCAGAAATTTATGATTTAATGCAAGCGGTAAGTATCATTCTAAGCATTGGTATAAAATAGAAACAAG TGTTATTATTAGACGATGACAAACGGAATGAATGATAAGTGAAAATCTTTATAATTGTTAAGCTTTCTATATTTAAACTA GGTCTTAAGTCTTACAGTTCATTTTGGCATAAATTTCTTCCCCTTAACAGTTAGATCTGCCATCCTAGAAGAATGGCTTG ATCATAAATTCATAATACATTAATTAGCGATTCTTCGTTAATATCTTTTTAAGTCCTAATTTGTAATTTTAAATGAGGCT GTCTATATTAAGTTATCATTTCAATGGGAGGAGGCATTTTTGACACTGGTGAACAATACTTAGTGGAACAGGCATGAAAA TCAAATCCGAACCCATGGATATCCCCAACCCCGACTTTGACAGTGAAAACCAGCTTTGATCGGAGCCGACTCCGACATGA ACCCAAAGAAGCGGTGATGGGGATGGGTTTGGGGGTGCTAATATCCCACCCGAACCCACCCAGATATGATAATTATATAA CTTGAATTAAAATAGTAGAAAAATAACAATATTTAACTCAAATTTTGCTAAATGTATGATTCTTAAATTTCTTATTTTTA AATATTTTTTGAATTAAAATGTAGTTATTTAAATTTATATATAAATGAATAGGATTAAATAAAAAAATTAAAATAATGAG GACATGGGTTCCTCTGGGTTTCCCCGAACTCGGCCAGCTCTTAGTATGGGTGGATGTGAGGAGAGCTATACCCGCCTCGA CCCGCCCCGTTGCTATGCCAGGAGAGGAAAAACAGGTAAGGATAACTTATTTTTCTAATTTGGGTGCACTGCAAGCAACA ATACTATCCTGACAAAATTTCATAAAATCTTTCGTGAAATTATTCATTTGTTGACTTGATGTTGGCAGAGTCATTTTTAA TAAGTTATCTTAAAAAATGTCAAAGGGATGTCTGAAACATGGCAAAAAGACTTGTTTCATATAAAAGTGTCTTAGAAAGT GTTTTTTCTCCTGTTGCGTCGATGAAAATGTAAAATAAACAAGGCTTAATTGCAACTTTGGTCCTCGACGTTTACCAATG CCACGATTTTGGTCCCCCACCTAATTTAATTACATGGATGGTCCCCGACGTTGTAGGTCGTGTGCAACGTTAGTCCTATC GTTTATTTCTTAATGGAGGAGACTTACGTGAACGTTTAGTTGGAGAGAAAAATGAGGTATGAGGAGAGAGGGAAGCACGT GAGTATCATGTGAACCTTATATGAACCCATTATACCCAAATCTGAAACCCTAGGGATCTAAATCGTGTTACCTTCTTCGT TCTAGGGAGGTCAGGAGTTTGAGTATAATGGGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATA CCTCCTTTCTCTCTCCAATTGGACGTCCACGTAAGCCTCCTCCATTAAGAAATAAACGGTAGGACTAACGTTGCACACGA CCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTGGGGGACCAAAATCGTAGTATTGGTAAAAGTCGGGGACCAA AGTTGCAATTAAGCCATACATAAATAGATAAAAATCATATGAACTCTAGTCTGAGCTGAATTGGAGCTCATCATGGATTC CTTATGACATTCATGAAAGAAATCTCAGACTTATATTTAAAATATTCAGAACTTTGGTGTACAGTCAAAGCATGTGGGCA GACATGGAATGGAATACTGCACAGAATGGATTTGGATAGTTCCTTAAGAATAGGCAAGAATATGACACATGAATTGGGTC TGACAATTACACACCTAAATGTGTATATTTTTTCTGCTGGGTTACCAAATCTATGGCAGCATAGACATGTACATTTAGAT ATATACTAAAAAATAGTACAAGATGGAAATTTAGATCAACGACAAGCAACATTGAACGCTTAGGTTAGCTCTAACATATT ATAAACAAAATTCAAACCCTGGCATTGAATGAGGTTGGCTGGGCATTGATCTTTGAACCAGCAAAATTTTGGTTATATAC ATTAGGATCAATATATTTGAACAAGCATGAGAACTCAAAAATGCTTAGAAATCACTCTAGAAATGTCATATATAAATATT AAATAACTTTTCCGAGGAGAAATATTTAAAGGTGTACAAGTTCAGACTTTGTGTTGTTCCAGAAAAATACTAGACATGGA AACAGTTTGTTATTTGGATTGTGTTGGTGCTTTACTTGCTTATATTTTTGGGGGCAACAACCTCTTTGCCCTGACTTACA TTCCAATCCTCCTACACATGCTGCAGCCATTCAAGATAATTATAGTACACATTTTCATCTAGCACCACATGCTATGATTT GTTTTTCATTCACATATCTGATGCCAAAGTCATGAACTTTGATGTTATTAGTAAGATTTACCATATTCACTCACACTGGA TAGTTAACTAAGAAGGGGATTTGATGTTTCTTAGAACTATCATAGATTCATAGTAAAAAAAATTGATGTATATTGTTTGA TATGCTAACTCAAATCTCTGACGTATTACTATAACTTGAAACTGTAGGCTGATATAGATAACAGTGGGACCATTGATTAT GCCGAATTCATTGCCGCTACATTGCATCTTAACAAGGTTGAAAGAGAAGATCACCTATTTGCAGCCTTTAATTACTTTGA TAAAGATGGAAGCGGATTTATTACTCAGGAAGAACTTCAGCAGGCTTGTGATGAGTTTGGCATAAAAGATGTGCGCTTAG AGGAGATAATCGGGGAAATTGATCAAGATAATGTTAGTGGTTTACAATTCTGTACACTTCCTTTTCCTTTAGCACAAATG AATTACTTGGTTTGCTCATTCTTACTAGCTACCTTCTCTTTAATATCATAAGCTCAAGACATCCCTTGATTAACTTTTGT TGGCATTTCTCTCTAGAAACTTTTTCTCCATACACTGAAGGGTCCCCATGCATAGAGATTCGTTGTCAGTTGAAAATGGT TTTCGTCATTGTTTCTACTTATTTTGGATGGATTAAAATCTTCCGTCTCATATTCCTGTCCCATCTGTGAAATTTTGA
CDS sequence (LotjaGi6g1v0015700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAAGATGATAGATGCAGACAATAGTGGTCAAATCACCTTTGAGGAACTTAAAGCTGGTTTGAAAAGAGTGGGCGC TAATCTAAATGAGTCAGAAATTTATGATTTAATGCAAGCGGCTGATATAGATAACAGTGGGACCATTGATTATGCCGAAT TCATTGCCGCTACATTGCATCTTAACAAGGTTGAAAGAGAAGATCACCTATTTGCAGCCTTTAATTACTTTGATAAAGAT GGAAGCGGATTTATTACTCAGGAAGAACTTCAGCAGGCTTGTGATGAGTTTGGCATAAAAGATGTGCGCTTAGAGGAGAT AATCGGGGAAATTGATCAAGATAATGTTAGTGGGTCCCCATGCATAGAGATTCGTTGTCAGTTGAAAATGGTTTTCGTCA TTGTTTCTACTTATTTTGGATGGATTAAAATCTTCCGTCTCATATTCCTGTCCCATCTGTGA
Protein sequence (LotjaGi6g1v0015700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKMIDADNSGQITFEELKAGLKRVGANLNESEIYDLMQAADIDNSGTIDYAEFIAATLHLNKVEREDHLFAAFNYFDKD GSGFITQEELQQACDEFGIKDVRLEEIIGEIDQDNVSGSPCIEIRCQLKMVFVIVSTYFGWIKIFRLIFLSHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 115 | 115 | 6.7E-75 | – | |
| SMART | 1 | 25 | 25 | 0.0028 | ||
| ProSiteProfiles | 1 | 28 | 28 | 14.486 | ||
| PANTHER | 1 | 115 | 115 | 6.7E-75 | – | |
| CDD | 1 | 57 | 57 | 1.35623E-15 | ||
| SUPERFAMILY | 1 | 115 | 115 | 2.23E-34 | ||
| Gene3D | 1 | 119 | 119 | 5.8E-38 | – | |
| Phobius | 1 | 129 | 129 | - | – | |
| ProSitePatterns | 6 | 18 | 13 | - | ||
| Pfam | 10 | 60 | 51 | 1.9E-12 | – | |
| ProSiteProfiles | 29 | 64 | 36 | 10.385 | ||
| SMART | 33 | 61 | 29 | 0.048 | ||
| ProSitePatterns | 42 | 54 | 13 | - | ||
| ProSiteProfiles | 65 | 100 | 36 | 15.239 | ||
| SMART | 69 | 97 | 29 | 5.9E-4 | ||
| CDD | 69 | 115 | 47 | 6.17236E-9 | ||
| Pfam | 70 | 95 | 26 | 8.5E-8 | ||
| ProSitePatterns | 78 | 90 | 13 | - | ||
| Phobius | 130 | 149 | 20 | - | – | |
| TMHMM | 131 | 150 | 20 | - | – | |
| Phobius | 150 | 153 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0015700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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