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LotjaGi6g1v0038900.1

Overview

Field Value
Gene ID LotjaGi6g1v0038900
Transcript ID LotjaGi6g1v0038900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|G7JA63|G7JA63_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi6g1v0038900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:7549942..7555614) extracted from Lotus japonicus Gifu genome v1.2.

GAAAGACTAAGCAAGAGTTAATGTTGGAAACTCCAAGGGGAGAGAGATATACAATTGACATTTGTTGGAGAGTGTTGTGG TGGCAATTCCAGAGGCCATGTGTGAAGAAGAGAAATGGGAGGATCTAACATCATGCTAATGCTAATGCTACTCTGGAGTT GTCATTTCCTTCCTTAATCCTCATCTCCTCAACTAACTACTACAAATACAGAAAGTAAAACCCTAGAAAATTATGAAGAA GCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTCTCCGCCGCACCGGACCCGCCGGAAC CTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCATTACCACCTCACCTCCCTCTTCTTCC TCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGTTAGCCGAGGTGAGCCTTCTTCACCT TCAATGGTTAACCGCCTCTATTACTACTGTCTTTGATTTACTAAGTTTATCATCACTTGTTTTAGTTATCAAGAAAGGTC ATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTGGTTTGCGTTCTACAGTCTGGAAGGT ACTCTTTTCTTTTTTCGTATCGTTACAAGTCCCACATTGGTTAGCGATATGACATAGATAGCCTTTATAAATGGTAGACC GACTCTCGGCTTTCGAGCTAGCTTTTGGGTTGAGTTAGACCACATTTGATGTTACAATTTATTTATTCATTCATGTGCAC AGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAGTACAAACAT TTCAAAGACGACCTTCTCATGAATCCTGTTAGTTAGTTAGTTAGTTAGTTACTCACGAGCTTATGTTACGTTTGCTTTAT CTACATGGCTCCCTATCCTGATTGTTTCTGTGGCTAGTTAGTCAGAAATCACAAGGAGGATGTGCAGTTCGGCTAATTAT GACACCGACGACTCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCACTCAAGGCGAACACCCTTTGAGTCT TGGCAAGACCAGCATATGGAACCAATTCTTCCAGGTACTGTGCAAATTTCTCTCAATAAGTAAATCAATACATGTGCAAT TTGCAGGAAAGTATTATTAGAATATGTAATCTTTTTCATTTAGAAAATTATGCATCAACTATTTTCGTGTTGCTTTGCAC AATTGCCTGTAAGATGATTACAGTATTCTTCTATATCGTGAGGTGAAGTTTAGAATAGGAACTGGTTAGAATAGGATAAA ACAGAACATATTAGTTGTGTTTAATGATGGATGCATATAAGAAATAGAACAAAACATGGGATAAAGTTAAAAAAATTAAT ACAATTTGGTTCTACTAAAAAGATGGAAATAAAGAGAACAGCACAAAACAAGTTGTTATCTATTCTTTCCATATGCCAGA TACTACCTAAATTTCTTAAATTAGATACTATGTGAGTGAGTTCAAAGGGGAACCTTGGTGCAATGGTTAGAGAAGTTCGA GTCGTGGAATAAGTCTCTTGTACATGCAAGGTAAGACTGTCTATAGTAGACTTGTAATGGATCTGACCCTTCTTTGGATG GTGGGAGCTTGATAGCATAAGTTTCCCTTTAGATACTATGTGAGTTTTCATGTAATGAACTATTTTTGTTTCTACAATAA CACTGTGTCCCGAGGTACATGTTAAGGGGTTGAGTTGCCCTTACCCGAATTCTAATACGGTATCATAGCCTATCCTACAT CCAATTTTTGGAGCATCTATAAATGGACCACCCGTAGATGTCTAGTCTTGCAAACTTCACGCTCCAGATTTTCAACCCTG CACGTGAGGGGTGTGTGTGTTAAGTGCTACATTGACTAGGGGTATGATCAAATAAGTCCTTATAAATGGTAGAACAATCC TCACCCCTAAGCCTGCTTTGGGGTAAAGTTTACCTTGATTTCTAATATACCATAATATCATTGGCCAACTATCCCAAAAC AGGATATTGGGTGAAGCCACATGAATGCCTAAATTATATTTCTAACCCACCCCCTCAGGCAAGAGCCCATTGGACTTGAA GCATGGACAATGCACATGTCCACTTACCTTGTGTTGAAATTCAATTGTTTATTAGAATACTGGGGCGGACTACAATGATC GAAGTATAGACTGCTTGGTCATTATGAATCTAATACCATGTGATGAACCATCTGTCCAAAAGCTTAACTTGTTAAGTGAA TACAAATGAATGGTTTCTATGATATATGTTATATTTCTAACATGCCCCCTCATGCAAGAGCCAATTGAAATTGAAGCATG GACAGTGTACAAATCCACTTATCTTGTGTGAAATAACTATCCCAAAGCTTAAGCTATTAGGTGAAGACAAAATGATTTTA TAATATTATATTTTAACAAGGTAATTATATTTAGCAAATGTTTACCAGCTACCACTATTGATCTTGCTGTTGTCAATATT TTAGTCTTTAATTAACTTTATTGCTGTAAAACTCGTTCTGTACTCTGGGGTGTTGTAAATTGTGATAGTAAATTTCCTCT TTGTATGTTTTAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATACACTTCTTCT GTGGTGATTCTCAGTTTGCCAAATCTAATCAGGTTGATCCCTTATTTCTTTTGAAATTCTTTCAAACTTAGTACAACAAG CGTTTTTATTGTCATGAATCTTTTGATTTACTTTCTTTTTTGTGGGGAATTTTCAGGAGTCTTTAAAGAACATATTAATT ATCTTTGCAAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGATATTGGCTCCTCTATTCTATGTGTTAAA AAATGACCCTGAGGAGGAACATGCGGTGAGTTTACCCTTGCAAGCTCCCCTCACCCATCTTTGTCTTTAATATGAAAATG TATTATTGCTTACCAAGGAAATTAGGAAAAGAAATGTTGCCAAAAACAAGGCCCATTGCCATGCCCATAAACAAAGAATC AATCCTCAATCTTGCCCTCCAAATATTAGGATGTCACCTCATTAGTCTTCTAAGGATTTTGTTCACCAAATTAGTCACTC GTAGATTTAACATGTTACCATATTAGTTGTTCAATTTTTTCCCCACTGAATTAGTTGCTCGAAAAGACAACTTTCATTGA ATTCTTCATTTGGTGTGATTTCCTTGTGCTTTTAAATAGATGGATTTGGTGAGAATTGTGTACCCTATAGGGACTAGTTT TTGAAAAATTCTTGGAGAACTGGTATGGTGGCACTTTAGTTTTTTGAGGTAATTTGGTGACACTTCAATTTTTGGAGGTA ATTTGGCAACGAAAATCTTAAGAGGGTAAATGTGATGACACCCTAATCTTTGGAGATTCAAATTGAGATTTTACTCAAAA GAAAAAAAGTGAAATTATTAAAATGACCATGAGAATGTTGATAGGCTTTCTTTTCCAATTTTTTTGGTTAGATAGCAGTG ATTGAGTTACGTAGATTCATGTTGCTTATGTTATATGACATTAACTTTGTTCAGCTGTTGCCAATTGCTATATGTGCAGG CCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAATTATTGAGTGGACTCCGAGATAATTTTTGCCAACAACTTGAC AATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATTGTCTCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCA TCTTGAAGTCACGACTAAAGTAAGGTGCAAATTGAAGTGCATATAATTTCTAAAATGAACCACCATTAAACAATTGATAA AAGAAATGGGTTGAGAGGGACAACTTATCCTTAGAATGTTGGTGATTAACTCAATTTGGTTGGCATATTAGTCTAAGGAA TGAGTGATGACAACATTGTACTTTGCTTTGCTTTATTAAATTTTTGAAATAAATTTTCCCTCCAATATTGACAAAATAAA AAATTAATGAAATAGAAAGTGTGCTTTTGTTAGTGGGACCACCCACCCATTAGGAGGGTTTACAGCAGGAAGAATTTGGG AGGTAACAGAATATTAGAACCTTAGAGAGTTAGTGATAATAATGACTGTCCACTAGACAGATATTAGTAAGTTAATGGAG GGGAGCAGGAATAAATTGGGAGGAAGGACTTTATATTCTATGTTTTTTTCATCTCTATCATCAGTTCTTGTATCTTCCTG GCATTGTTAGCTTCTGAGTCAATTCAGATTCAGTTCTATTAATTTCTTACGCGCCTCTTCGTTTTAGTGACATGAACGTG GCCTTCACTATCTATATAGTTGTTCTTTTGGAACTCTTATTGTCTATTTGTTGGTACTGTTTTATGTTCTTCTTATATTC AATTAAGAATTAAGTGATGCTAGTGATCTTTAATTATTCAATACTTTTTTTTTTGGGTTGAATTCAGCATACTGTTTTGA GTGAAAATTGGCCAGATGATTGATTTGCTAATGTGTTTTTGCTTTGGTTATTGGGAAGTTGAACAGAAAAATCTCACCTT TCTGGTTCTAAATATCAGGTCAATCCCCAGTTTTATTCATTTAGGTGGATTACTCTCCTCTTAACTCAGGAATTTAATTT CCATGATATCCTTCATATTTGGGATACCCTTTTAAGTGATCCAGAGGGTCCACAGGTACAGTTTTCTTCATATTTACCTT GAATTATATTGGACTGACTTCCCTTCACCTAAACTCTACCAATTTACTAACTCTGCGTAATCATGTGCAGGAGACACTGC TCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGGTGATTTCACTTCTAATCTCAAGTTGCTG CAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGCACAGTCGGTCTAGTGGTTTTC ACCTATGATTTTTTTGTATTTTGTTTTTGTCTCTAACATAGTGTTTCTAAATTTTGTGATTGTCGATTACTCTGTAAATG TTGGTTTAGGGAAAATCTTATATACTCGTATTTTTACTAAATTTGTATTGTAATTCTACATTACTGTGGTCTGGATGAAA TTCGCTTGTATACTTAGTTGTTAAGCACCGGTGGTCCTTGTATTCTCCAAAGGACATTAGAATAAAACTATTTTGTCATG TTCAAGGGTTTAAGTTGTCATATATCCTTGTTAACTGTCGGTTGATGTTTTTAATGTTTGTGGCCGTATCTCGCGCACCA GATTAAGCTCTCTTCTCCTTTTCTCAAACAACATTTTGCATACAGGCTATGCCAACTGGAGCAGCATATCAAAGCTATGC AATTGGTTATTTTGAAACTTTTTTTTTGTTAAGAAAATAAAAAGTCCTGATCTGCCATCACCATCCTTAATCTTCTTCTT TCATCTTAACCAAGAAATTCATCTTCATATTCCTCATCAACATTTCCTAGATTTAATCAGAAAAAAGGAATGGGTTTTCG ATCTTCTCCCCCTCTTGGATCTGTTGTAACCTTCTTTTCTAGAGGAGGAGGGAATAGTGGTGGTGGAGAGATG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTCTCCGCCGCACCGGACCC GCCGGAACCTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCATTACCACCTCACCTCCCT CTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGTTAGCCGAGTTATCAAGA AAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTGGTTTGCGTTCTACAGTCTG GAAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAGTACAAAC ATTTCAAAGACGACCTTCTCATGAATCCTTCAGAAATCACAAGGAGGATGTGCAGTTCGGCTAATTATGACACCGACGAC TCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCACTCAAGGCGAACACCCTTTGAGTCTTGGCAAGACCAG CATATGGAACCAATTCTTCCAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATAC ACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGAGTCTTTAAAGAACATATTAATTATCTTTGCAAAGTTG AACCCAGGTATAAGATATGTTCAAGGGATGAATGAGATATTGGCTCCTCTATTCTATGTGTTAAAAAATGACCCTGAGGA GGAACATGCGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAATTATTGAGTGGACTCCGAGATAATTTTTGCC AACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATTGTCTCAGCTTTTAAAAGAACATGATGAAGAA CTGTGGCGTCATCTTGAAGTCACGACTAAAGTCAATCCCCAGTTTTATTCATTTAGGTGGATTACTCTCCTCTTAACTCA GGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGTGATCCAGAGGGTCCACAGGAGACACTGCTCC GGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGGTGATTTCACTTCTAATCTCAAGTTGCTGCAA AGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGCACAGTCGGTCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0038900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKRVPDWLNSPLWNSDHHRFSAAPDPPEPPSPPPPVIHDSRTRHNGITTSPPSSSSASSSDDISHSRQGHAQLLAELSR KVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKDDLLMNPSEITRRMCSSANYDTDD SKFGSRGMLSRSQVTQGEHPLSLGKTSIWNQFFQDSDIIEQIDRDVKRTHPDIHFFCGDSQFAKSNQESLKNILIIFAKL NPGIRYVQGMNEILAPLFYVLKNDPEEEHAAFAEADTFFCFVELLSGLRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEE LWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQ SYPSTNISHLLHVANKLRAQSV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957:SF509
1 421 421 2.6E-172 –
MobiDBLite
mobidb-lite
1 70 70 - –
PANTHER
PTHR22957
1 421 421 2.6E-172 –
MobiDBLite
mobidb-lite
43 68 26 - –
SUPERFAMILY
SSF47923
77 324 248 4.71E-50
IPR035969
SMART
SM00164
92 391 300 2.8E-52
IPR000195
ProSiteProfiles
PS50086
97 365 269 33.052
IPR000195
Gene3D
G3DSA:1.10.8.270
180 292 113 9.4E-13 –
Pfam
PF00566
194 386 193 6.5E-42
IPR000195
Gene3D
G3DSA:1.10.472.80
301 421 121 1.5E-36 –
SUPERFAMILY
SSF47923
302 419 118 7.06E-33
IPR035969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0038900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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