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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0038900 |
Transcript ID | LotjaGi6g1v0038900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TBC1 domain family member; TAIR: AT1G04830.3 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13; TrEMBL-Plants: tr|G7JA63|G7JA63_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi6g1v0038900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7549997..7555215) extracted from Lotus japonicus Gifu genome v1.2.
TGACATTTGTTGGAGAGTGTTGTGGTGGCAATTCCAGAGGCCATGTGTGAAGAAGAGAAATGGGAGGATCTAACATCATG CTAATGCTAATGCTACTCTGGAGTTGTCATTTCCTTCCTTAATCCTCATCTCCTCAACTAACTACTACAAATACAGAAAG TAAAACCCTAGAAAATTATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTC TCCGCCGCACCGGACCCGCCGGAACCTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCAT TACCACCTCACCTCCCTCTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGT TAGCCGAGGTGAGCCTTCTTCACCTTCAATGGTTAACCGCCTCTATTACTACTGTCTTTGATTTACTAAGTTTATCATCA CTTGTTTTAGTTATCAAGAAAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTG GTTTGCGTTCTACAGTCTGGAAGGTACTCTTTTCTTTTTTCGTATCGTTACAAGTCCCACATTGGTTAGCGATATGACAT AGATAGCCTTTATAAATGGTAGACCGACTCTCGGCTTTCGAGCTAGCTTTTGGGTTGAGTTAGACCACATTTGATGTTAC AATTTATTTATTCATTCATGTGCACAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGC AAAGAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTTCTCATGAATCCTGTTAGTTAGTTAGTTAGTTAGTTACTCA CGAGCTTATGTTACGTTTGCTTTATCTACATGGCTCCCTATCCTGATTGTTTCTGTGGCTAGTTAGTCAGAAATCACAAG GAGGATGTGCAGTTCGGCTAATTATGACACCGACGACTCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCA CTCAAGGCGAACACCCTTTGAGTCTTGGCAAGACCAGCATATGGAACCAATTCTTCCAGGTACTGTGCAAATTTCTCTCA ATAAGTAAATCAATACATGTGCAATTTGCAGGAAAGTATTATTAGAATATGTAATCTTTTTCATTTAGAAAATTATGCAT CAACTATTTTCGTGTTGCTTTGCACAATTGCCTGTAAGATGATTACAGTATTCTTCTATATCGTGAGGTGAAGTTTAGAA TAGGAACTGGTTAGAATAGGATAAAACAGAACATATTAGTTGTGTTTAATGATGGATGCATATAAGAAATAGAACAAAAC ATGGGATAAAGTTAAAAAAATTAATACAATTTGGTTCTACTAAAAAGATGGAAATAAAGAGAACAGCACAAAACAAGTTG TTATCTATTCTTTCCATATGCCAGATACTACCTAAATTTCTTAAATTAGATACTATGTGAGTGAGTTCAAAGGGGAACCT TGGTGCAATGGTTAGAGAAGTTCGAGTCGTGGAATAAGTCTCTTGTACATGCAAGGTAAGACTGTCTATAGTAGACTTGT AATGGATCTGACCCTTCTTTGGATGGTGGGAGCTTGATAGCATAAGTTTCCCTTTAGATACTATGTGAGTTTTCATGTAA TGAACTATTTTTGTTTCTACAATAACACTGTGTCCCGAGGTACATGTTAAGGGGTTGAGTTGCCCTTACCCGAATTCTAA TACGGTATCATAGCCTATCCTACATCCAATTTTTGGAGCATCTATAAATGGACCACCCGTAGATGTCTAGTCTTGCAAAC TTCACGCTCCAGATTTTCAACCCTGCACGTGAGGGGTGTGTGTGTTAAGTGCTACATTGACTAGGGGTATGATCAAATAA GTCCTTATAAATGGTAGAACAATCCTCACCCCTAAGCCTGCTTTGGGGTAAAGTTTACCTTGATTTCTAATATACCATAA TATCATTGGCCAACTATCCCAAAACAGGATATTGGGTGAAGCCACATGAATGCCTAAATTATATTTCTAACCCACCCCCT CAGGCAAGAGCCCATTGGACTTGAAGCATGGACAATGCACATGTCCACTTACCTTGTGTTGAAATTCAATTGTTTATTAG AATACTGGGGCGGACTACAATGATCGAAGTATAGACTGCTTGGTCATTATGAATCTAATACCATGTGATGAACCATCTGT CCAAAAGCTTAACTTGTTAAGTGAATACAAATGAATGGTTTCTATGATATATGTTATATTTCTAACATGCCCCCTCATGC AAGAGCCAATTGAAATTGAAGCATGGACAGTGTACAAATCCACTTATCTTGTGTGAAATAACTATCCCAAAGCTTAAGCT ATTAGGTGAAGACAAAATGATTTTATAATATTATATTTTAACAAGGTAATTATATTTAGCAAATGTTTACCAGCTACCAC TATTGATCTTGCTGTTGTCAATATTTTAGTCTTTAATTAACTTTATTGCTGTAAAACTCGTTCTGTACTCTGGGGTGTTG TAAATTGTGATAGTAAATTTCCTCTTTGTATGTTTTAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGC ACTCATCCAGATATACACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGTTGATCCCTTATTTCTTTTGAA ATTCTTTCAAACTTAGTACAACAAGCGTTTTTATTGTCATGAATCTTTTGATTTACTTTCTTTTTTGTGGGGAATTTTCA GGAGTCTTTAAAGAACATATTAATTATCTTTGCAAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGATAT TGGCTCCTCTATTCTATGTGTTAAAAAATGACCCTGAGGAGGAACATGCGGTGAGTTTACCCTTGCAAGCTCCCCTCACC CATCTTTGTCTTTAATATGAAAATGTATTATTGCTTACCAAGGAAATTAGGAAAAGAAATGTTGCCAAAAACAAGGCCCA TTGCCATGCCCATAAACAAAGAATCAATCCTCAATCTTGCCCTCCAAATATTAGGATGTCACCTCATTAGTCTTCTAAGG ATTTTGTTCACCAAATTAGTCACTCGTAGATTTAACATGTTACCATATTAGTTGTTCAATTTTTTCCCCACTGAATTAGT TGCTCGAAAAGACAACTTTCATTGAATTCTTCATTTGGTGTGATTTCCTTGTGCTTTTAAATAGATGGATTTGGTGAGAA TTGTGTACCCTATAGGGACTAGTTTTTGAAAAATTCTTGGAGAACTGGTATGGTGGCACTTTAGTTTTTTGAGGTAATTT GGTGACACTTCAATTTTTGGAGGTAATTTGGCAACGAAAATCTTAAGAGGGTAAATGTGATGACACCCTAATCTTTGGAG ATTCAAATTGAGATTTTACTCAAAAGAAAAAAAGTGAAATTATTAAAATGACCATGAGAATGTTGATAGGCTTTCTTTTC CAATTTTTTTGGTTAGATAGCAGTGATTGAGTTACGTAGATTCATGTTGCTTATGTTATATGACATTAACTTTGTTCAGC TGTTGCCAATTGCTATATGTGCAGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAATTATTGAGTGGACTCCG AGATAATTTTTGCCAACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATTGTCTCAGCTTTTAAAAG AACATGATGAAGAACTGTGGCGTCATCTTGAAGTCACGACTAAAGTAAGGTGCAAATTGAAGTGCATATAATTTCTAAAA TGAACCACCATTAAACAATTGATAAAAGAAATGGGTTGAGAGGGACAACTTATCCTTAGAATGTTGGTGATTAACTCAAT TTGGTTGGCATATTAGTCTAAGGAATGAGTGATGACAACATTGTACTTTGCTTTGCTTTATTAAATTTTTGAAATAAATT TTCCCTCCAATATTGACAAAATAAAAAATTAATGAAATAGAAAGTGTGCTTTTGTTAGTGGGACCACCCACCCATTAGGA GGGTTTACAGCAGGAAGAATTTGGGAGGTAACAGAATATTAGAACCTTAGAGAGTTAGTGATAATAATGACTGTCCACTA GACAGATATTAGTAAGTTAATGGAGGGGAGCAGGAATAAATTGGGAGGAAGGACTTTATATTCTATGTTTTTTTCATCTC TATCATCAGTTCTTGTATCTTCCTGGCATTGTTAGCTTCTGAGTCAATTCAGATTCAGTTCTATTAATTTCTTACGCGCC TCTTCGTTTTAGTGACATGAACGTGGCCTTCACTATCTATATAGTTGTTCTTTTGGAACTCTTATTGTCTATTTGTTGGT ACTGTTTTATGTTCTTCTTATATTCAATTAAGAATTAAGTGATGCTAGTGATCTTTAATTATTCAATACTTTTTTTTTTG GGTTGAATTCAGCATACTGTTTTGAGTGAAAATTGGCCAGATGATTGATTTGCTAATGTGTTTTTGCTTTGGTTATTGGG AAGTTGAACAGAAAAATCTCACCTTTCTGGTTCTAAATATCAGGTCAATCCCCAGTTTTATTCATTTAGGTGGATTACTC TCCTCTTAACTCAGGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGTGATCCAGAGGGTCCACAG GTACAGTTTTCTTCATATTTACCTTGAATTATATTGGACTGACTTCCCTTCACCTAAACTCTACCAATTTACTAACTCTG CGTAATCATGTGCAGGAGACACTGCTCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGGTGA TTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGTTAC GTGCACAGTCGGTCTAGTGGTTTTCACCTATGATTTTTTTGTATTTTGTTTTTGTCTCTAACATAGTGTTTCTAAATTTT GTGATTGTCGATTACTCTGTAAATGTTGGTTTAGGGAAAATCTTATATACTCGTATTTTTACTAAATTTGTATTGTAATT CTACATTACTGTGGTCTGGATGAAATTCGCTTGTATACTTAGTTGTTAAGCACCGGTGGTCCTTGTATTCTCCAAAGGAC ATTAGAATAAAACTATTTT
CDS sequence (LotjaGi6g1v0038900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTCTCCGCCGCACCGGACCC GCCGGAACCTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCATTACCACCTCACCTCCCT CTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGTTAGCCGAGTTATCAAGA AAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTGGTTTGCGTTCTACAGTCTG GAAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAGTACAAAC ATTTCAAAGACGACCTTCTCATGAATCCTTCAGAAATCACAAGGAGGATGTGCAGTTCGGCTAATTATGACACCGACGAC TCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCACTCAAGGCGAACACCCTTTGAGTCTTGGCAAGACCAG CATATGGAACCAATTCTTCCAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATAC ACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAA TTATTGAGTGGACTCCGAGATAATTTTTGCCAACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATT GTCTCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAAGTCACGACTAAAGTCAATCCCCAGTTTTATT CATTTAGGTGGATTACTCTCCTCTTAACTCAGGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGT GATCCAGAGGGTCCACAGGAGACACTGCTCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGG TGATTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGT TACGTGCACAGTCGGTCTAG
Protein sequence (LotjaGi6g1v0038900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKRVPDWLNSPLWNSDHHRFSAAPDPPEPPSPPPPVIHDSRTRHNGITTSPPSSSSASSSDDISHSRQGHAQLLAELSR KVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKDDLLMNPSEITRRMCSSANYDTDD SKFGSRGMLSRSQVTQGEHPLSLGKTSIWNQFFQDSDIIEQIDRDVKRTHPDIHFFCGDSQFAKSNQAFAEADTFFCFVE LLSGLRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLS DPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 70 | 70 | - | – | |
PANTHER | 21 | 224 | 204 | 9.6E-137 | – | |
PANTHER | 21 | 224 | 204 | 9.6E-137 | – | |
MobiDBLite | 43 | 68 | 26 | - | – | |
SUPERFAMILY | 77 | 281 | 205 | 1.67E-29 | ||
SMART | 92 | 348 | 257 | 3.6E-22 | ||
ProSiteProfiles | 97 | 322 | 226 | 17.93 | ||
PANTHER | 226 | 375 | 150 | 9.6E-137 | – | |
PANTHER | 226 | 375 | 150 | 9.6E-137 | – | |
Pfam | 231 | 343 | 113 | 4.0E-21 | ||
Gene3D | 258 | 378 | 121 | 1.2E-36 | – | |
SUPERFAMILY | 259 | 376 | 118 | 5.75E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0038900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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