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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0049700 |
| Transcript ID | LotjaGi6g1v0049700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich receptor-like kinase; TAIR: AT5G40380.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 42; Swiss-Prot: sp|Q9FNE1|CRK42_ARATH Cysteine-rich receptor-like protein kinase 42; TrEMBL-Plants: tr|A0A151U9U8|A0A151U9U8_CAJCA Cysteine-rich receptor-like protein kinase 2; Found in the gene: LotjaGi6g1v0049700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8968536..8969304) extracted from Lotus japonicus Gifu genome v1.2.
TGATGAATATTATACACACACAACAATAGACTATTAAAACTAATGTAAGCCGCCAGCAAGAGCAAATAAACTAATGAAGT CCCAATAGTACTAATAGACACACACTTGTGAATTTCTTCATCATATATATTTGAAGTTATCAAGTAATCTGAGACACAGC TAAAGAATAAAGATGCAGATGCTGCAACTCAAGTTCTTACTGGCCATAACCTTGACATTGTGGTGGTGGAGCGACATCAA TCATCACGGTGCAGTCGCGGCGCCGCAGACAAAGTTGCTGAACGCAGGGTGCAGCACGTACAACGCTTCTAACCTGCGCA GTTTCCATGCCAACATCAACGACACGTTTTCGGACCTGCGAGCGGAGATTAGGAACCAGAGCAACAACCACTTCGCGACG TCGCAGAAAGCAAGGGGGGAGGTGATTACCTTTACCATGCTTCAGTGCAGAAACTACCTCTCCAGAAAGGATTGCCTCGC TTGCTTCGACGCTGCTGATAAGAAAATCCGCAACTGCTCCGCCGCCAACGGTGCCAGAGTCATCTACGATGGCTGCTTCC TCAGGTAGGTGTTTTCAGCATGAAATGAGATGAACAACTAATCTTTACCTTAGTTTTTTTTCTTCTACTTCAGCATGAAG TTTAATCATTCATCGCCATCATAGGGCGTTCTAGCGTCCACCACCTATTCGGGTGGTAGTGAATGATTTTTTTTTGAAAG TAAACAATATATATGCATTAATCAAAGAAACGGGTAATAAAGCTATTAC
CDS sequence (LotjaGi6g1v0049700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATGCTGCAACTCAAGTTCTTACTGGCCATAACCTTGACATTGTGGTGGTGGAGCGACATCAATCATCACGGTGC AGTCGCGGCGCCGCAGACAAAGTTGCTGAACGCAGGGTGCAGCACGTACAACGCTTCTAACCTGCGCAGTTTCCATGCCA ACATCAACGACACGTTTTCGGACCTGCGAGCGGAGATTAGGAACCAGAGCAACAACCACTTCGCGACGTCGCAGAAAGCA AGGGGGGAGGTGATTACCTTTACCATGCTTCAGTGCAGAAACTACCTCTCCAGAAAGGATTGCCTCGCTTGCTTCGACGC TGCTGATAAGAAAATCCGCAACTGCTCCGCCGCCAACGGTGCCAGAGTCATCTACGATGGCTGCTTCCTCAGGTAG
Protein sequence (LotjaGi6g1v0049700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQMLQLKFLLAITLTLWWWSDINHHGAVAAPQTKLLNAGCSTYNASNLRSFHANINDTFSDLRAEIRNQSNNHFATSQKA RGEVITFTMLQCRNYLSRKDCLACFDAADKKIRNCSAANGARVIYDGCFLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 8 | 131 | 124 | 7.8E-43 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 8 | 131 | 124 | 7.8E-43 | – | |
| Phobius | 20 | 29 | 10 | - | – | |
| Phobius | 30 | 131 | 102 | - | – | |
| Gene3D | 32 | 131 | 100 | 9.4E-17 | ||
| ProSiteProfiles | 33 | 131 | 99 | 13.855 | ||
| Pfam | 40 | 131 | 92 | 1.5E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0049700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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