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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062800 |
| Transcript ID | LotjaGi6g1v0062800.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase SDIR1; TAIR: AT3G55530.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1; TrEMBL-Plants: tr|C6TGC2|C6TGC2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0062800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11535355..11542034) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGGT ATGTAATTTATGTCTCAGTTATTTGCTTAAACGAAGTAGCATAGCTGAAATACATAATGCTATTTTGTTTCTTTGTTTTC TCATTTCATGAATAAAAGCATTGATTAACTAAAACTTCATACTGATTACAATCTTTTCTTCAGCGTGTTCATGCAGCACG TCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGGTATTCATGCTTTCACATTATGTGCAATCATTTTAAGTGTAG ATTAATTCTTTTTTCTATATCTTCTTCAATGTTCCATTACAACTTACTGCTTATTTGTTTCAGTTCTCCTGTTATTCATG ATACTCAACTCTCATCAGATGTCGCCAAATTTTCTGGTATGGGTCTTCTGTATGTAAACAAGGGATACACGTTTTTTTCA TTTTGTGAAAAGGGCACTTCAAATTGTTTGAGTGGTTTATGACTGATCAGGTCTTCTTTCTGTTTGTAGCTCTGGCTGGT GCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCAACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATG CAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTTGCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGG CGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGACCTAGGTTTTGTAGTTCTTTTTCTCCT GTAGTTAATTTATATGCTCCAGTCTTTTCATGTGTCATAATATATTCATATACTTTATTTTTGAATTTCAGATTATGAAA CTTTAAGAGCTCTGGATTCAGATAATGTTTCTACTGCACCTTCTATGACAGAGGAAGAGATAAATGCTCTTCCTGTTCAC AAATACAAGGTTTCTGGTCCCTCAAGGTAAAGTAATCAGTCAGACCAATTGTTGTAATACAATCTTTAAATGGATTCATT ATTTTAAACCAGGAAATCCTATTCTAATAGTATTCTTCTATGCCCCACCTCCTTAAGAAAAGCCCTCTATCAAGAGTATT TTCTAATGTGAATGTGTACGTTCTGCAAGAATTATAACTCACTATTTACATGTCATAAGTCTAATTGTATAGACACATTT GAGGGTTTAAAAGCATAGATCCTATAAATAAATTATATTATTTTCTATTGTGAATGATGTGTTATTGATGACATGAAAAT GCTGATTTGAACTGCCATGTTACTTGGAAAAGAACTTGGGTACGTTTGTGCACTTCTATTTACTCTATTTTGTGTACCCA TTTAATATGACATTTGAAGAGGTTCTTAAACTATACTTTATATGCAAGTAATTGACATGTTAACATGTATTCCAAAGATA TATGCACACACACACATCACTAGTATTGATGTGGGTATTTACTCCTTGAGTTACAATTTTTTATGGCGTCTACCTATTCT GAAAAAATTATAATACTGTTTCTTTGACAAGAAGCTTCTTTTGCTTACAGCAGTGGTTCCTCATTGCCACAAGCATCACC TTCTACTTCTGCCGAGGTATCATTGTTATTTTCCTCCCATCCATTTGGCCTAAACAAGTGAATAATAACATTGCATTTTA TTATAACTTCACTGCTTCCTTGAGGGTATTTATTGTCTTCTGTATGTTATGCCTGTGATTTTCCTGCCCTATTCCTGGCC GTATTGGGAATTGCTGATACCCCTCCAACTGCATCTTGTGATGACTTTGAAGTGGATTTAATATGGCGCATTAATCTTGA TTGAGGACTTTGAAAATTGTGAAACTCATTGTATTATTTTCTTGAATATCATGTTATCATTTTGATAGAACCCAGAAAAT ATAAATGTATTATTAGTTAGAAACATAGTAGTCAATCCCGGATAGCGGCGCGTAGCGGCCGGCCCCAAAAGGGGGATAGC GTGATAGCGCATAGCGGGATGGCCGCTATTCTGAATTTTTTTATGTAATTTTATATCATTAATAGTTTAATACTATATAC ATATAAATAGCAAACAATGTCAAATATTGCCTAAAATTCATAACATTCATAATAGAAATAAAAATCATAAGTCTTGAACA ATAACACACAACTAATAACTTCTCAAAAGCAAGGTAAAGAAGTCGAATTTGCAAATCTGAATGAAGAATGAAGCTTAATT CTTTCAATTTTGACCTATAATGGCCCTGAGAAGTCCTAACATGCCCATAAAAAGGTTCCCCAACGATTTAAAACGAAGGG GCTTGAGTCATTTTCTCCTTCGTTCATATAGCGCCGCTATTTCCCGCTATTGGCCGCGATCTGCCGCTATTTTGGCCGCT ATTCGCGCCGCTACGACCGCTATTGTGAAGTTGGCCGCTATTTCATCTCAATAGCGGCAGGGAGCCGCTCCGCTCCGCTA CACCGCTATAGCGCCGCTATTTGCCGCTATTGACTACTATGGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGAAGA TACAAGGAAGAGATACCAAACACCCTCCCTAAACCCTAGAGAGACCCAACACTCTCTAAACCTAATTTCCAAAGTCAATA CAAAGATAACCCAATGCTCTCTAGTCACTCTTATTTATAGGCACATGCCTCTTTAACCCAACAACTAACTAATGTCCCCG CTTAACTACTAACTAGCTAACCCGGTGCACCTATCAATACTCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAAGGACT TGGATCCAATTGCTGAATATTCGCAACTCTTCCACCCGGATCCCATTGCTGAAACTGCAAATAGTACACATTGCATTAAG TGTTGAGCCAATTTCCCACATAACTGTGGAAAAATAGTCCTCCTGGATCCCGCACCAGTCTCCTTGGATCCACAAAATCC TTGATAGAATGAGTTTGGCCCAATGAGCCCAAACAGTGATACCCATCTTCAGCTCTCCAATTTTGTTCAACTTTTTCTGC CTTCCAAACCCATTTTAAGATATGGGCTTGACCCACCTTTTCTCTCCCACTAGTATACCCTAACAAAGGTGCCAGGCCTA GGATTATCACTCCAATGTGGCAGCCCAATGCTGCTTGGGTCATGTGTGGCCAGTACCACTTTTTCTTCCTGCCTTGTGTC TACTCTTAGTGGCTCCTGCAGAAGGTTTTTGGCACTTGGAAAGCAAGCCTTTTTTCTGTTTCCTCCATGCGCTGCCAGCA AGCAACTTCGACTTTTGCAACAGGACACCTGGCTCACTGTTCTCTTTATTGAAGATTTTAGCAGTTTACTTCTGCCAAAC CACATTAGTATTGAATGATAGAGAAGTGACATCGAATGTGAACCTGTGTCTCACTCGCAAGTCGAAACCTTTGGCTGTTT GTCTCTCTACGGCCAAAATCGTCTCTGCCACCATGTGCATATAGTTCTCCAGCGACTCCAGCGGTGGTTGCTGGACCGGC ATCAGTGTTATCAAATAGCGGCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCTGCTATTGCCCGCTATAGCGCG CTATTCCCGCTATTCGCCGCCAAGTAGCGGCTGAAATAGCGGATTTTGGGCGCACCGCGATGGTCCCCGATCGCGATTTG ATAACACTGACCGGCATGCCTCGCCTTGCTTGCTATTACTAGGGCAGCTTGGGTCTCCATAGGCATCTCACAATACGGCG GTTCTTGCGGCAGAATTATAGCACCACCTCTGTCACAATGGCCTCGATCACCGGCGAATTGTCGACCACCCTGGTATGAC GGTTTTGACTGCGGTTGTTCTCAGAACCGCTGTTGTTGCGACAGAAACTTCACCAAATCCGCCATCCTCGTCGTCCACCC AGGCCTCATCGTAAGGTGGTTTCGGTGGAGGTCGTATGAGCGCTCCCATATTTCTCTTGCCCAACAACTTCATCTCTGCA CATGCGAAGTGATGTCGCCGGAACTCCGCCACTGACGACACCATGCGAAGTGATGTCGCCGGAGCTCCTTTCGCAACGCC TCCGCTGCTACTCGTTTATCCTCCGCTGCTTCAAGATTGGATTTTCGTGACGCTGCAATCTCTGATGGCCTCTTAAACGC CTTCGCTGCCGCTATCTCTGCCTCCAACGCGACTTCAGAAGTTTACTAAAAAACCGCTGCATCTGGCCTTTCTTTTGCTG CGGTGTCCGATCCCTTCAGCGACGCCACTGCCGTTGTTCGCTCTGCCTCGGTTGCCGCCTCCGATTCTCTCCTTTCTTGT TCCCTCTTCTGTCTCCTCTCACTTTCTTTCTGTAATCTCTCACTTTCCTTTCTCAATTCTGTTATTTCTCTGACAAGTGC ACAAATCTCCTCCTCTTGCGATGACAGAGAAGACGAGAAATCCTCCTTTCTCTTGCCAGCCATCTGCTCCTTATATACTG TTTGCTGTAGGATTATCTTGGTCAGGGCACCTAAATCGGTGCTCTGATACCAATGATAGAACCCAGAAAATATGAATGTA TCATTAGTTAGAAACCCTAAATCCCAAATAAGAACTAGGGGGAAGAATGACGATACAAGGAAGAGATACCAAACACCCTC CCTAAACCCTAGAGAGACCCAACGCTCTCTAAACCTAATTTCCGAAGTCAATACAAAGATAACCTAATGCTCTCTAGTCA CTCTTATTTATTGGCACATGCCTCTTAAACCCAATAGCTAACTAATATCCCCGCTTAACTACTAACTAGCTAACCCTGTG TACCTATCACATTTACATCCGCAGTTGTGCCTATATTTGTTGGAAGTCTCTGGAATTGTCCACCTGATACACTCATGGTG ATGGTAGAGTTAAATAGCAATAGGATCATACAAATATGTGCAGAACTATTCCCACCATCCCCTGGATAAAGTAACCAATC AATTTGTTTTTACATACCCCAAATTTGTTTGCGGTAGAATAAAATTAGGCACCGCAATTTTATCTGCTGTAAGGTTAGGC ACCGCAATTTTATTTGCGTTAACGTGGAAGCCACTGTGTTTCTGGGTTTTTTTTATATATATATTGAAGGCAGGCTTAAT TCTAAAAATTTGAATCATGTAACACAATCTGGAAATTAAGGAAGCAAGTTTTCGAGGGTCTTAATTCTTCTTCTACTTCT GCATTTGATCAATCTGAGAGAGAGAGAGAGAGATTGAAGAAGAGAAGAGAAAGAGAGAGTAGAGAGAAGGACCATGGAGT GCAAAAAAAAGAAACAGTGGCTTTTATTTTGTGTGGAGTGAAGAGAAGGACCATGGAGGTGGCTTTTAGAAAATGGTGAT GTGTTTTATGTAGTGGGAGAAGAGAATGGTTGCTGCAAGAAGAGAAAGAATGGAAGGGACGAAGCAGAGTGAGAACATCA AAAGGAACAAACGCAGATCTCATAAAATAAACCGACCACATTCTAGTTTGTGGAATGTAAATTGGCTACCGCTTTCTAGA ATGCGGGAGCGAGAAGAAAAGGATGGTGAGGGAGATTTAAATCAGGGGTATTTTAGCCTTTTTTTAAAATCGGGGATGGT GTTATAATGTGTGGGGATGGTATTAGTAGTTTTTCCCGACAAATAAACCAACATTGTTAATTTTTCTACTGTCAAATTTT GAACTTTTTATTTTACTAGCTGTTTGTATAATATATTGCTCTTTGTTTGTGGCAGAAAGAGCAGGATAAATCAAATGCAG TTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGTGTATGCTTGGAGCAAGTCAACGTTGGAGACATACTTCGT AGCTTGCCATGCTTGCATCAGGTCTGTTTCATAGTATAACAATCTCTAACCTTTTAACAAAATGTCTGTTTTCTATTTGT TTGATGATATATTGGTTCAGTTCATATCTGCTAATGGTCACTAATATATGTAAGAAGTAAAAAACAATATAAAGTCACTT TCAACTTTATTAGAAATAATAGCAGGCTAGTTTTAATCACCTTTTTTCTGCTACTAAGTACAAGCATGGTTGAAGTCCTC ATATTTCAGCTATAGTTGAAATTGGATTATGTAAATTGTTGCTGGCATTGCTTTTGTTTTTTAAAACTTTCTTTCTCTCT GGATGTTCCACCATGATCTGCGGTACATCGCGTATCCGTAAATTATATTTTATGTAGTTTTTTTTGTGTGTACTAAATTA CTCTCGCAATTTTGACTCGGGTGTGGTACCAATTGTATGTTTCAAGATTGTGTTGTTTCACTTTTGAGTTGTCGTGAGCT AGTTTCACCATATTTTAATTACAGTATATAATTACATGACACCCTAACAAATTTGTCCAATATTAAATCTAAAATCTGTT TATGTTTGAAACATCTTTTTAAAGTTCTTCGAAGTTATGTAGTTATTTTTCAACTTGCAGTCATGGTAAACCAAAATGCT TAGATTAATATTCTCTTCTTATTTATTTACTTATCTTAATGTGATACTGATACCTCTTATGTTTTGTTTCTTTATTAAAG TTTCACGCTAATTGCATCGATCCATGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCAGGAACTGGGTG GAGTGAGAGTGGACATAATGACATCGCAGACATGGTTTAA
CDS sequence (LotjaGi6g1v0062800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGACATAGAAAATGGGTTTCCGGGATTTATACCTGAGAGGCGTGCATTGCG TGTTCATGCAGCACGTCCTAGTAATTCTAATTCACTCACTTTTCTTGTGACAGTTCTCCTGTTATTCATGATACTCAACT CTCATCAGATGTCGCCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCA ACATGTCAACAGCTCCAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCATACAGAAGTGCGGTT GCATATGCCTCCATCGATAGCACTTGCAAGTCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTTCTTGATCGGG AGTTTGATGACCTAGGTTTTGTAGTTCTTTTTCTCCTGTAG
Protein sequence (LotjaGi6g1v0062800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFVFRGTRADIENGFPGFIPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYA TCQQLQAQAQAHAAAASGLLGHTEVRLHMPPSIALASRGRLQGLRLQLALLDREFDDLGFVVLFLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 143 | 143 | 1.1E-77 | – | |
| PANTHER | 1 | 143 | 143 | 1.1E-77 | – | |
| TMHMM | 34 | 51 | 18 | - | – | |
| Phobius | 37 | 55 | 19 | - | – | |
| Phobius | 56 | 60 | 5 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| TMHMM | 61 | 80 | 20 | - | – | |
| Phobius | 81 | 146 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0062800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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