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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0070100 |
| Transcript ID | LotjaGi6g1v0070100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acid phosphatase 1, putative; TAIR: AT2G39920.1 HAD superfamily, subfamily IIIB acid phosphatase; Swiss-Prot: sp|O04195|Y2992_ARATH Uncharacterized protein At2g39920; TrEMBL-Plants: tr|G7JAN9|G7JAN9_MEDTR Acid phosphatase-like protein; Found in the gene: LotjaGi6g1v0070100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13361979..13365381) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGCTTCCTTCTGAGAGTGACTGAAGCCAGTACAACAGACAACGGCAAAATATCTTCCCTCATGCATTCTGTGCTATA CATCAATCATCAATGTCTTTGCTTTGGCATTGAAGTGAAATTTCAGTCCTCGTATTATCTTCAAGATTCTGTTTTGGCGC AGATTAATGTCTTTCTCAGGTGCTTTTTTCACTCACCAAATTCCCTCATAGTCATAGCTGCATGTATCAACAAGATAGTT GTTTTCTCTGTGTTGTGTACTTGTGTATTAAAATTTTCACTGGGGGTATTTTTTTTATCACGTTTCAGGGGGCAACCAAT TTCATTTCATCTTGTTAAAAAAAAATTGAACCAATTTGAGTTCTACTTTTTGGTGATTGCGAACCCATGTGTAGCCCTGC CCCTAGTGTTGATGGTTTTGAAAATCGTGTAGCCCTTCACCGAATGTGTGTTGAATTATAGGTTATGCATTTCACCCCTG GAAGCAAACTGGAGCTGTTACTTGAACTAGATTATTGGTTAGTTTATAGCTTGAAGCCATGTCAGCTTATGCCCATCAAA TGCAGCAGCAGTCCTCTGCAAGTAGTTCCTCAACTGATTCTGGTATGTAAGGCCAAATTTGCCACTCTTTGGCTCTAAGT TAATTTTAAACATTATGATCTATTGTTAGAGCCTTCTCTTAAATAGATTAATATTTTGAGGATATAGATGATTATTACTT ACCTTTATGCTATTTTCATTTTCACCTATGAATTATATTGTAAAAAGTAGTGTCTTGTGAATAAGAACTTCAACCCTACT CCCCCACCCCACCCAAAAATAAAGTAAAATGTACATAAAAAAATTCTAAATCGAGCTCATCAATTGATTTGGTTCATGTT TAATTAGGAATTACTCTATGAGCTTCCATGGTCATCAAGAGTTAGTTAGGATATTAGATTTAAATATTAGTTGATCCATT ATGTTAGTAAGGATTATCTGTTATCCATTATATGTTATAGGGATTATCTATTACTTAGAAGTTAGTTAGGATGAATAAGA TTAAATATTAGTCTGTTTGGTTAGGAAAAGGGCAGTCAGTATTTTTTTGGGATTGATTCTAATAGAGAAAATCCTAAGTT TGTAAAGGGGATTTCTGTTGTGAAGAAGGTCTTTTTTCCTGTTCCCAATAATATTGAAATGCCTTTTCCTATGGTGTGAA CTCGTCTGTTTCTATCTCTGTTTCTGGTTGAGTCATATTGGTCCTTAACAACTAATTTACCATGAAGCATGACTTACAAG AGCTGTACTCATTTGATGCTTGGGCTGGTAGATATTATTAGTGCTTGTTCTCATGTATCTTATATTTTAGCACCTTGGAA TTGTAACATTGTTCTTTGCTGTTCACAGAGACAGGTAGCCATTATGAGCTATTGTCAGGATTCTACATGACATCTTTTAC CGCGACAATCTTTGTTGGTTCACTTGTTTCTCTTGGAGTTTTGTTAATTACTTTGCTGATTTTCATGGTGATTATGCTGC AATCCTGTCAAAGTAAGAGTACCGGAGTTATTGAGCTTCTCAATATGCTTGATTATTACAGTTATTGCAGGGTGCATTCT CTGCATGTTGAGCTCAATAACTTGGAAGGATATGATCTTCCAAACTTCTGCAAAGATCTGGCTATACATTACATCAAAGG AGGTCAATATGCTAGAGACTTGAACTTAACTGTGTCTATGATTGATTATTACTTCAAGAGTGTTAGACCTTCAGATGATG GTTTGGATGTCGTGTTGATGGACATAGATGACATTGTTCCTCAGAATCCTTATTCTTTTAGTTTGTCTCATAGGTAATTC CTTGCAACTAATGCTCCTTGATACAGGATAATGCAAAATATAGAAAAGTTCTCACATAAGAGACAACTGGTATTGAACGT TATACACATTCTATAACTTGCTAACAAACAAACAAACTGCTAAAATAGGATAACCGTAGTTACTAATGCCAACTAACACA CAAATTAACTTTACAGTAGTATCTAACTAAATCAATAGTAAACTAATAAGCTCTATTCGATCCTGATCTTTATTTTTGTA ACTTAGGAAGCAGTTTCTTTTGGCGCAGGTTTCATAATGACAGCATTAGCAACTGTATCAAGGAGGCAAAGAATACAAAT ATCATGCTTGTTTCAAGATTATACTTGAACCTCCAAACTAATGGATGGTCTATAATTTTGCTATCAAGAGAGCCTGGAAT ATACCAAAATGTCACCATTAATCATCTTGTTTCTGTTGGATTTAGAGGTTGGGCTTCCTTGATGATGAGGTATAGTAACT ATGATCCTTTTATCTATCCAAGAAAATGCCAAAGTGCATGTTTGGATGTATGGTAAAAAATCACGGTGAGCAGAAGCCCC TTGTCTTAGTTTTTGTGATTGTCCACATGATTTTGGCCTCACCGTGGCCAAACATGCACTAAGGAAAGATCCTAAGTTAT TGGCCAATTTTTTTTTTAAGATCTAGCCTTCTCTCGAGGTCTCATGGGTTCTCAATTGGTTTCAATGCTTTAAAATTGCT CTTCTTGGATTGATATTTACAAACATATTTAAGAGGTAAACTATCTTAGACATTTTCATATCTAGTTATCTCTTCTCTTA TCTACCACTCACTTGCTTAAGTTAGCTTTAGCTTTTCTGAAAGCATATATATTTAATTTACTAACTTTAGCTTTAGCGAA AGCGTAATAATTTGTATTTTTGCAGAGGAGAAGATTCAGATTCTACCAAAGGGAATGAGTACTTTTCTAGGCAAAGGAAT GTGATACTGAAGAAGGGTTTCCGAATAAGAAGTATCATAAGCAGCCATATGGATGCGTTGATCGCTCCAGGCACAGGAAT TCAAAACTTTTTGCTTCCTGACCTTGTATGTGACAAGTTTATGCATCAGACACAGAGCATAGACACTAAGGCTGAGAAGG GATAAAGCTCCAAAAAAATTCTACTTGTTTAACTCTTACTTCAGCCCTAAATATTTGGAAGATCCTTTATATTACCTTCA TTTTTTTCGGTTTCTTTTCTAACTATCCTTTACTATTGTGCACATTTACCAATATTTATTTATATTTCTATTTATTATTC CATATTAAATTGTGCATAATTGTTTATCATTCCAAATTAAATTGTCTATTCTTCAAAATCTGCTCACAACTGGGCTCTTA GCTCCAAGACGGGTTACACTGCAGATAGGTTTATGCAATCTTGGTGGTGGTGGTGAGTCTTATGCTTCTTGTCTCTATAA GGTTATGGGGGGTTTTATGGGATCTAGAAGAGAAAGGGGTGGCTGAGTGGTGGTGCAAGTGGGTGGGGTGGTCTATGATC TCCAAGGGTCAGAGCCACCGTGAAGCCATCGGTGGTTATATGA
CDS sequence (LotjaGi6g1v0070100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCTTATGCCCATCAAATGCAGCAGCAGTCCTCTGCAAGTAGTTCCTCAACTGATTCTGAGACAGGTAGCCATTA TGAGCTATTGTCAGGATTCTACATGACATCTTTTACCGCGACAATCTTTGTTGGTTCACTTGTTTCTCTTGGAGTTTTGT TAATTACTTTGCTGATTTTCATGGTGATTATGCTGCAATCCTGTCAAAGTAAGAGTACCGGAGTTATTGAGCTTCTCAAT ATGCTTGATTATTACAGTTATTGCAGGGTGCATTCTCTGCATGTTGAGCTCAATAACTTGGAAGGATATGATCTTCCAAA CTTCTGCAAAGATCTGGCTATACATTACATCAAAGGAGGTCAATATGCTAGAGACTTGAACTTAACTGTGTCTATGATTG ATTATTACTTCAAGAGTGTTAGACCTTCAGATGATGGTTTGGATGTCGTGTTGATGGACATAGATGACATTGTTCCTCAG AATCCTTATTCTTTTAGTTTGTCTCATAGGTTTCATAATGACAGCATTAGCAACTGTATCAAGGAGGCAAAGAATACAAA TATCATGCTTGTTTCAAGATTATACTTGAACCTCCAAACTAATGGATGGTCTATAATTTTGCTATCAAGAGAGCCTGGAA TATACCAAAATGTCACCATTAATCATCTTGTTTCTGTTGGATTTAGAGGTTGGGCTTCCTTGATGATGAGAGGAGAAGAT TCAGATTCTACCAAAGGGAATGAGTACTTTTCTAGGCAAAGGAATGTGATACTGAAGAAGGGTTTCCGAATAAGAAGTAT CATAAGCAGCCATATGGATGCGTTGATCGCTCCAGGCACAGGAATTCAAAACTTTTTGCTTCCTGACCTTGTATGTGACA AGTTTATGCATCAGACACAGAGCATAGACACTAAGGCTGAGAAGGGATAA
Protein sequence (LotjaGi6g1v0070100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAYAHQMQQQSSASSSSTDSETGSHYELLSGFYMTSFTATIFVGSLVSLGVLLITLLIFMVIMLQSCQSKSTGVIELLN MLDYYSYCRVHSLHVELNNLEGYDLPNFCKDLAIHYIKGGQYARDLNLTVSMIDYYFKSVRPSDDGLDVVLMDIDDIVPQ NPYSFSLSHRFHNDSISNCIKEAKNTNIMLVSRLYLNLQTNGWSIILLSREPGIYQNVTINHLVSVGFRGWASLMMRGED SDSTKGNEYFSRQRNVILKKGFRIRSIISSHMDALIAPGTGIQNFLLPDLVCDKFMHQTQSIDTKAEKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 37 | 37 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 17 | 297 | 281 | 4.4E-124 | – | |
| PANTHER | 17 | 297 | 281 | 4.4E-124 | – | |
| Phobius | 38 | 63 | 26 | - | – | |
| TMHMM | 42 | 64 | 23 | - | – | |
| Phobius | 64 | 309 | 246 | - | – | |
| Pfam | 79 | 268 | 190 | 4.7E-18 | ||
| Gene3D | 83 | 294 | 212 | 5.1E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0070100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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