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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0101500 |
| Transcript ID | LotjaGi6g1v0101500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y protein; TAIR: AT5G43250.1 nuclear factor Y, subunit C13; Swiss-Prot: sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog; TrEMBL-Plants: tr|G7JC00|G7JC00_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi6g1v0101500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22325463..22327728) extracted from Lotus japonicus Gifu genome v1.2.
GATTGGAAACCTAACCTTAAATGAGAAGAGTGAGAAGAAATGAAGTAAAGAGAAAGAGAAATGGCAATGGATTCAGGCTC AGCGGAGGAAGAGAAGGCACGATCACCCGAATTACCGAGAGTTAGGGTGAAGAAGATAATGACTGTGGACAAAGAGGTAC AGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCCCTCTCCACCCAGCTATTCCTCGAATTTCTTGCTGAAAACTCTGCC AAGATCGCCATCGACAAGAAACGCAAGACGGTCAACCTCGAGCACTTAAGAATCGCTGTTAAGAGGCATCGCCCAACCTC TGATTTTCTTCTTGATTCGCTTCCAATGCCATTGCCTGCTCACAAGCCTGATAAGCCCACTGCGGATAAGCCCGATACGG CCGCGGCAGCCGGTGTTGGTAGTACTCGCCGCATCGATCATTTCTTTCGAAAATCAGATGCTTGAATAAGTGAGCCTTAG GTTAGATTGATTTGTGTTAGTACTTGCAACAATTCTAATTTGTCACTGTAACATGTTTGCTTTATATCACTGCATCAATT TAGTTTTATGCAATTTCTCTTTTTTTCAGTCTAAATCTATGTTATTGATGTAGAAATTTAAGGAGAAAATGGTCCAGAAT GTGTGGATACCATAGAAGATGCCTCTTCTTTTGTATGAGAAGTAAATGCAGGTTCACCTGATTTTATTGATAGTAAACCC TAATTCCCAATTGGGAACTAGGGAGAGATACAATGGAAAGGGATACCGAACTCCCTTCGAAACCTAAGAGAGAATCACTT CTCTCTAACCCAAAACATACCAAAAGATGCTCCCAAATGACTCTAACACTTATTTATACTCACTAACTCCCTCTCTAATA AAGTGTGTTCCTATCATGTCTAATTGTCTACGGCTCGAGCCTGGTTTTATCGTGTAGATATTATCTCTCTGAACAACTCC TTGGTTCTGAATCCTCTTCTTTTCCCATGACTTCATACCAAGATACGAGAATATGGTTATCGTGTAGTATAAAAGATCAT ATTGCAAGAATCTTTTCATGAACAACATAATGTGAGCCAGAAATAAATATTTGCTTTGAAGTAGTGTATGAAGCTACCAT TGTACTGAGAAATACTAACATGCTGCTGCAGTCTTTTCTTATCTTACTCCTTTTCTCGCCTCAGTACATTATATTCTTCC AATATTTCCTTAAGAGGTACCTATGCACATATGATTTTAGCTTTCGCTTATCAATTTAATAAACTATAGTACTGTGCTGT TAAACTATTTGATGTAACATAAAATTGTATAAATATAATATGGTTTGCTTTGTTAAGGTGTTTGCTATCTTCTGAGATTT AGCATGGTGTTTCTATGTTTCACGAAAAATTATGTACATAAGGTTTTGGCATTACTTGATTAACGGATTTTGCATGAAAA GAGCTCCTGAATTTGTATCTGGTTTTTTATGTGCTGTTATGTTCTTACATATGATTAATATGCTAGATATGTAATTTCAA TATTGAATGGGATATGATTACTTTTGGTGAATGTAAGCCATTCAGGGAATGGTGTCTACAAGTTTTCTCTTCTTTCATAT GCGATATCAGTTAATTACCAGTAAGCTTGCTTTGTAAATATATCTTTCTTTGCTTTGAAGACTACAGTGTGTGGAATCAC CAGTATCTGAGACAGTTAACAGGGTGATCTAGGAATTATTACATCAAGAAATATCTTATAGAGGGGGGAATCTTCTCATA ATACTTATTTGGTCATTCTTAATATGCTGGACCTTCTCTGAATTTTTACAATCTTCTAACTTGTACCCTGTTGAGAATAA ATTCAATTCTTACTTATCCACTTTTTAAGTACATGTTGTCTAATATGTGAAGAATATCAAATTCAAAGTGTTGCAGAGTG TAAGATATCTTACCTGATCATAAAAGAAAACCTTATTAATTTCTTCTTCCCAACTGCTAGTCAATTTTATTAGCAAATCT ACCAAAGCTGGAAATAGAAACCATTGTATGTAAGCACATGTGTTTTTGCTGCCAGTTAGTGCGAAGTTCATTGTTTTGAT CTCATTAAATATACCTGGCATTCTGCAGGCCATTGTACGAATCGTTCAGCTCGTCTCAAATTTTTGTGTACTCCTCTAAT GACTGAGTATTGGTTATTATCCTGATAGCATAGCGGATTGTTAAATATATAGCACTGGATACAATCACTCTAACTCTATA ATCTTATTGAAGAAGATTGATTCCGA
CDS sequence (LotjaGi6g1v0101500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGATTCAGGCTCAGCGGAGGAAGAGAAGGCACGATCACCCGAATTACCGAGAGTTAGGGTGAAGAAGATAAT GACTGTGGACAAAGAGGTACAGAGAGTGAGTTCAGAAGCGTTGTTCCTGGTGTCCCTCTCCACCCAGCTATTCCTCGAAT TTCTTGCTGAAAACTCTGCCAAGATCGCCATCGACAAGAAACGCAAGACGGTCAACCTCGAGCACTTAAGAATCGCTGTT AAGAGGCATCGCCCAACCTCTGATTTTCTTCTTGATTCGCTTCCAATGCCATTGCCTGCTCACAAGCCTGATAAGCCCAC TGCGGATAAGCCCGATACGGCCGCGGCAGCCGGTGTTGGTAGTACTCGCCGCATCGATCATTTCTTTCGAAAATCAGATG CTTGA
Protein sequence (LotjaGi6g1v0101500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMDSGSAEEEKARSPELPRVRVKKIMTVDKEVQRVSSEALFLVSLSTQLFLEFLAENSAKIAIDKKRKTVNLEHLRIAV KRHRPTSDFLLDSLPMPLPAHKPDKPTADKPDTAAAAGVGSTRRIDHFFRKSDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 96 | 96 | 6.7E-21 | ||
| PANTHER | 8 | 132 | 125 | 2.1E-51 | – | |
| PANTHER | 8 | 132 | 125 | 2.1E-51 | – | |
| Pfam | 17 | 80 | 64 | 1.8E-16 | ||
| SUPERFAMILY | 18 | 93 | 76 | 1.27E-15 | ||
| MobiDBLite | 95 | 119 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi6g1v0101500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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