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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009072
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 323 results. Now displaying 1 of 7 with 50 rows per page. This search has taken 5.664s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007419.1
n.a. Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| chr0 2890121 2891389 -
3 domain predictions
1 GO term
Lj0g3v0088269.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 36036993 36037599 +
3 domain predictions
1 GO term
Lj0g3v0094589.1
n.a. Hypothetical protein CBG05841 [Caenorhabditis briggsae] gi|268536014|ref|XP_002633142.1| chr0 39771942 39772928 -
3 domain predictions
1 GO term
Lj0g3v0110789.1
n.a. Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| chr0 48081339 48082491 -
3 domain predictions
1 GO term
Lj0g3v0122049.3
n.a. TATA-binding protein-associated phosphoprotein Dr1 protein [Phaseolus vulgaris] gi|413968350|gb|AFW90513.1| chr0 54543113 54545308 -
3 domain predictions
1 GO term
Lj0g3v0127649.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 57561130 57561956 -
3 domain predictions
1 GO term
Lj0g3v0161739.1
n.a. TPA: histone H4.3 [Zea mays] gi|414589551|tpg|DAA40122.1| chr0 76128591 76129258 +
3 domain predictions
1 GO term
Lj0g3v0173119.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Vitis vinifera] gi|225449176|ref|XP_002278716.1| chr0 83210461 83216089 +
3 domain predictions
1 GO term
Lj0g3v0192519.1
n.a. Histone H2A [Aegilops tauschii] gi|475577812|gb|EMT17934.1| chr0 94135533 94136310 -
3 domain predictions
1 GO term
Lj0g3v0200479.1
n.a. histone H2A [Zea mays] gi|195619692|gb|ACG31676.1| chr0 98888972 98889276 -
3 domain predictions
1 GO term
Lj0g3v0209729.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Cicer arietinum] gi|502151779|ref|XP_004508609.1| chr0 105223745 105224394 -
3 domain predictions
1 GO term
Lj0g3v0296239.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 11-like isoform X2 [Cicer arietinum] gi|502174102|ref|XP_004515436.1| chr0 153922563 153925059 -
3 domain predictions
1 GO term
Lj0g3v0301379.1
n.a. Histone H2A protein 9 [Theobroma cacao] gi|508783691|gb|EOY30947.1| chr0 156626283 156626594 -
2 domain predictions
1 GO term
Lj0g3v0313589.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-6-like [Cicer arietinum] gi|502123417|ref|XP_004498102.1| chr0 163733807 163734648 +
3 domain predictions
1 GO term
Lj0g3v0315519.1
n.a. histone H3, expressed [Triticum aestivum] gi|300681467|emb|CBH32561.1| chr0 164706414 164707367 -
3 domain predictions
1 GO term
Lj0g3v0324679.1
n.a. PREDICTED: protein H2A.7-like [Glycine max] gi|356543960|ref|XP_003540426.1| chr0 169718066 169718205 +
3 domain predictions
1 GO term
Lj0g3v0326419.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-4-like [Glycine max] gi|356533573|ref|XP_003535337.1| chr0 170662135 170662988 +
3 domain predictions
1 GO term
Lj0g3v0346529.1
n.a. histone H3 [Zea mays] gi|195611240|gb|ACG27450.1| chr0 181783706 181784418 +
3 domain predictions
1 GO term
Lj0g3v0348809.1
n.a. PREDICTED: histone H3-like centromeric protein HTR12-like [Glycine max] gi|356520296|ref|XP_003528799.1| chr0 183099008 183100456 -
2 domain predictions
1 GO term
Lj0g3v0351779.1
n.a. nuclear transcription factor Y subunit C8 [Medicago truncatula] gi|388523249|gb|AFK49677.1| chr0 184967421 184971084 +
3 domain predictions
1 GO term
Lj0g3v0351779.2
n.a. nuclear transcription factor Y subunit C8 [Medicago truncatula] gi|388523249|gb|AFK49677.1| chr0 184967421 184971084 +
3 domain predictions
1 GO term
Lj0g3v0359319.1
n.a. PREDICTED: histone H3.2-like [Solanum lycopersicum] gi|460414483|ref|XP_004252600.1| chr0 189178245 189178643 +
3 domain predictions
1 GO term
Lj1g3v1441390.1
n.a. Centromere protein S [Medicago truncatula] gi|357464945|ref|XP_003602754.1| chr1 17306707 17312993 -
3 domain predictions
1 GO term
Lj1g3v1441390.2
n.a. Centromere protein S [Medicago truncatula] gi|357464945|ref|XP_003602754.1| chr1 17306707 17312993 -
3 domain predictions
1 GO term
Lj1g3v1502590.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X1 [Cicer arietinum] gi|502133261|ref|XP_004501704.1| chr1 17938281 17938970 +
3 domain predictions
1 GO term
Lj1g3v1720150.1
n.a. PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] gi|502162858|ref|XP_004512638.1| chr1 20241615 20250293 -
2 domain predictions
1 GO term
Lj1g3v1914950.1
n.a. histone 2 [Populus trichocarpa] gi|224143081|ref|XP_002324843.1| chr1 22787705 22788491 +
3 domain predictions
1 GO term
Lj1g3v2391180.1
n.a. Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| chr1 28166973 28167383 +
3 domain predictions
1 GO term
Lj1g3v2534840.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 11-like isoform X2 [Cicer arietinum] gi|502174102|ref|XP_004515436.1| chr1 29066170 29067979 -
3 domain predictions
1 GO term
Lj1g3v3025180.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 3-like isoform X1 [Cicer arietinum] gi|502126856|ref|XP_004499468.1| chr1 34635167 34638251 +
3 domain predictions
1 GO term
Lj1g3v3221280.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 6-like [Glycine max] gi|356499648|ref|XP_003518649.1| chr1 36597032 36605231 +
3 domain predictions
1 GO term
Lj1g3v3221280.2
n.a. PREDICTED: transcription initiation factor TFIID subunit 6-like [Cicer arietinum] gi|502102626|ref|XP_004492136.1| chr1 36597032 36605231 +
3 domain predictions
1 GO term
Lj1g3v4449230.2
n.a. PREDICTED: histone H2A variant 1-like [Fragaria vesca subsp]. vesca] gi|470108692|ref|XP_004290644.1| chr1 52129373 52131259 -
3 domain predictions
1 GO term
Lj1g3v4515900.1
n.a. histone H2A [Naegleria gruberi] gi|290995687|ref|XP_002680414.1| chr1 53136292 53136516 +
3 domain predictions
1 GO term
Lj1g3v4579030.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Glycine max] gi|356572407|ref|XP_003554360.1| chr1 54441537 54444819 +
3 domain predictions
1 GO term
Lj1g3v4921050.1
n.a. Histone H2A [Medicago truncatula] gi|357511939|ref|XP_003626258.1| chr1 59812451 59813410 +
3 domain predictions
1 GO term
Lj1g3v4931770.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-9-like [Cicer arietinum] gi|502113373|ref|XP_004494629.1| chr1 60063143 60066061 -
3 domain predictions
1 GO term
Lj1g3v4955240.1
n.a. PREDICTED: histone H2AX [Vitis vinifera] gi|225451096|ref|XP_002265878.1| chr1 60247514 60248262 +
3 domain predictions
1 GO term
Lj2g3v1706520.1
n.a. Histone H3.3 [Arabidopsis thaliana] gi|15236103|ref|NP_195713.1| chr2 26363783 26365080 +
3 domain predictions
1 GO term
Lj2g3v2087990.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-6 [Glycine max] gi|356576945|ref|XP_003556590.1| chr2 31420077 31420525 +
3 domain predictions
1 GO term
Lj2g3v2574450.1
n.a. histone H3.2 [Arabidopsis lyrata subsp]. lyrata] gi|297808967|ref|XP_002872367.1| chr2 35414201 35414902 -
3 domain predictions
1 GO term
Lj2g3v3291390.1
n.a. Nuclear transcription factor Y subunit B-3 [Medicago truncatula] gi|357495047|ref|XP_003617812.1| chr2 41759798 41761518 +
3 domain predictions
1 GO term
Lj3g3v0201890.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-4-like [Cicer arietinum] gi|502135336|ref|XP_004502298.1| chr3 1286756 1288522 +
3 domain predictions
1 GO term
Lj3g3v0201900.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-4-like [Cicer arietinum] gi|502135336|ref|XP_004502298.1| chr3 1286756 1289681 +
3 domain predictions
1 GO term
Lj3g3v0697060.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max] gi|356546912|ref|XP_003541864.1| chr3 7608413 7609215 -
3 domain predictions
1 GO term
Lj3g3v1113600.1
n.a. Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| chr3 15040779 15041617 +
3 domain predictions
1 GO term
Lj3g3v1113650.1
n.a. histone H2 [Populus trichocarpa] gi|224113151|ref|XP_002316408.1| chr3 15051062 15051446 +
3 domain predictions
1 GO term
Lj3g3v1114700.1
n.a. Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| chr3 15064611 15065313 +
3 domain predictions
1 GO term
Lj3g3v1617180.1
n.a. PREDICTED: probable histone H2A.3 [Vitis vinifera] gi|225469181|ref|XP_002275483.1| chr3 20507905 20508532 +
3 domain predictions
1 GO term
Lj3g3v2613490.1
n.a. Transcription initiation factor TFIID subunit [Medicago truncatula] gi|357513949|ref|XP_003627263.1| chr3 32187267 32197073 -
3 domain predictions
1 GO term