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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003958
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 83 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.862s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0122049.3
n.a. TATA-binding protein-associated phosphoprotein Dr1 protein [Phaseolus vulgaris] gi|413968350|gb|AFW90513.1| chr0 54543113 54545308 -
2 domain predictions
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Lj0g3v0173119.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Vitis vinifera] gi|225449176|ref|XP_002278716.1| chr0 83210461 83216089 +
2 domain predictions
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Lj0g3v0209729.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Cicer arietinum] gi|502151779|ref|XP_004508609.1| chr0 105223745 105224394 -
2 domain predictions
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Lj0g3v0313589.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-6-like [Cicer arietinum] gi|502123417|ref|XP_004498102.1| chr0 163733807 163734648 +
2 domain predictions
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Lj0g3v0326419.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-4-like [Glycine max] gi|356533573|ref|XP_003535337.1| chr0 170662135 170662988 +
2 domain predictions
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Lj0g3v0351779.1
n.a. nuclear transcription factor Y subunit C8 [Medicago truncatula] gi|388523249|gb|AFK49677.1| chr0 184967421 184971084 +
2 domain predictions
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Lj0g3v0351779.2
n.a. nuclear transcription factor Y subunit C8 [Medicago truncatula] gi|388523249|gb|AFK49677.1| chr0 184967421 184971084 +
2 domain predictions
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Lj1g3v1502590.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X1 [Cicer arietinum] gi|502133261|ref|XP_004501704.1| chr1 17938281 17938970 +
2 domain predictions
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Lj1g3v4579030.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Glycine max] gi|356572407|ref|XP_003554360.1| chr1 54441537 54444819 +
2 domain predictions
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Lj1g3v4931770.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-9-like [Cicer arietinum] gi|502113373|ref|XP_004494629.1| chr1 60063143 60066061 -
2 domain predictions
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Lj2g3v2087990.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-6 [Glycine max] gi|356576945|ref|XP_003556590.1| chr2 31420077 31420525 +
2 domain predictions
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Lj2g3v3291390.1
n.a. Nuclear transcription factor Y subunit B-3 [Medicago truncatula] gi|357495047|ref|XP_003617812.1| chr2 41759798 41761518 +
2 domain predictions
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Lj3g3v0201890.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-4-like [Cicer arietinum] gi|502135336|ref|XP_004502298.1| chr3 1286756 1288522 +
2 domain predictions
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Lj3g3v0201900.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-4-like [Cicer arietinum] gi|502135336|ref|XP_004502298.1| chr3 1286756 1289681 +
2 domain predictions
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Lj3g3v0697060.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max] gi|356546912|ref|XP_003541864.1| chr3 7608413 7609215 -
2 domain predictions
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Lj3g3v2994480.1
n.a. PREDICTED: DNA polymerase epsilon subunit 3-like [Cicer arietinum] gi|502145798|ref|XP_004506183.1| chr3 37095866 37097725 -
2 domain predictions
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Lj3g3v3086110.1
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38816529 +
2 domain predictions
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Lj3g3v3086110.2
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38815196 +
2 domain predictions
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Lj3g3v3086110.3
n.a. DNA polymerase epsilon subunit [Medicago truncatula] gi|357472241|ref|XP_003606405.1| chr3 38812716 38816529 +
2 domain predictions
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Lj4g3v0109410.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Cicer arietinum] gi|502079716|ref|XP_004486346.1| chr4 931856 932530 -
2 domain predictions
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Lj4g3v1774670.1
n.a. PREDICTED: protein Dr1 homolog isoform X1 [Cicer arietinum] gi|502151745|ref|XP_004508592.1| chr4 25178224 25182346 +
2 domain predictions
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Lj4g3v1774670.2
n.a. PREDICTED: protein Dr1 homolog isoform 1 [Glycine max] gi|356511589|ref|XP_003524506.1| chr4 25178224 25182346 +
2 domain predictions
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Lj4g3v2365210.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max] gi|356532577|ref|XP_003534848.1| chr4 32510084 32511093 +
2 domain predictions
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Lj4g3v2799410.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511129|ref|XP_003524282.1| chr4 37445225 37446323 -
2 domain predictions
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Lj4g3v2825520.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] gi|356511186|ref|XP_003524310.1| chr4 37802801 37803454 +
2 domain predictions
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Lj5g3v0616270.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like isoform 1 [Glycine max] gi|356572407|ref|XP_003554360.1| chr5 8190063 8194184 +
2 domain predictions
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Lj5g3v1473470.1
n.a. nuclear transcription factor Y subunit C2 [Medicago truncatula] gi|388523237|gb|AFK49671.1| chr5 21594950 21598907 +
2 domain predictions
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Lj5g3v1654150.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-5-like [Glycine max] gi|356500286|ref|XP_003518964.1| chr5 23721428 23723882 -
2 domain predictions
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Lj6g3v1584620.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-8-like [Glycine max] gi|356537473|ref|XP_003537251.1| chr6 17906294 17907275 -
2 domain predictions
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Lj6g3v1720580.1
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
2 domain predictions
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Lj6g3v1720580.2
n.a. PREDICTED: nuclear transcription factor Y subunit B-3-like [Glycine max] gi|356555763|ref|XP_003546199.1| chr6 19473192 19475372 -
2 domain predictions
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Lj6g3v1880140.1
n.a. PREDICTED: nuclear transcription factor Y subunit C-9-like [Glycine max] gi|356528546|ref|XP_003532862.1| chr6 20693694 20695117 -
2 domain predictions
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Lj6g3v1880170.1
n.a. Nuclear transcription factor Y subunit C-9 isoform 1 [Theobroma cacao] gi|508713665|gb|EOY05562.1| chr6 20701813 20702543 -
2 domain predictions
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LotjaGi1g1v0016000.1
n.a. Nuclear transcription factor Y protein; TAIR: AT4G14540.1 nuclear factor Y, subunit B3; Swiss-Prot: sp|Q75IZ7|NFYB8_ORYSJ Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9VBC0|A0A0L9VBC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0016000 LjG1.1_chr1 2046304 2050334 -
2 domain predictions
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LotjaGi1g1v0053200.1
n.a. Nuclear transcription factor Y subunit C5; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|K7KB58|K7KB58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053200 LjG1.1_chr1 7514286 7519248 -
2 domain predictions
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LotjaGi1g1v0053200.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G19490.1 Histone superfamily protein; Swiss-Prot: sp|Q9D6N5|NC2A_MOUSE Dr1-associated corepressor; TrEMBL-Plants: tr|I1JIU1|I1JIU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053200 LjG1.1_chr1 7514447 7517554 -
2 domain predictions
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LotjaGi1g1v0206300.1
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44887445 44893732 -
2 domain predictions
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LotjaGi1g1v0206300.2
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.4 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889343 44893654 -
2 domain predictions
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LotjaGi1g1v0206300.3
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|C6T5K3|C6T5K3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889993 44893366 -
2 domain predictions
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LotjaGi1g1v0206300.4
n.a. Nuclear transcription factor Y protein; TAIR: AT5G23090.1 nuclear factor Y, subunit B13; Swiss-Prot: sp|P49592|NC2B_ARATH Protein Dr1 homolog; TrEMBL-Plants: tr|I3SKR2|I3SKR2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0206300 LjG1.1_chr1 44889993 44893366 -
2 domain predictions
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LotjaGi1g1v0321200.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0321200 LjG1.1_chr1 77165065 77166947 +
2 domain predictions
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LotjaGi1g1v0338400.1
n.a. Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4; TrEMBL-Plants: tr|I3SBJ9|I3SBJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0338400 LjG1.1_chr1 79877608 79882010 +
2 domain predictions
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LotjaGi1g1v0338400.2
n.a. Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|Q9FMV5|NFYC4_ARATH Nuclear transcription factor Y subunit C-4; TrEMBL-Plants: tr|I3SBJ9|I3SBJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0338400 LjG1.1_chr1 79877693 79878460 +
2 domain predictions
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LotjaGi1g1v0694000_LC.1
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0L9U847|A0A0L9U847_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
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LotjaGi1g1v0694000_LC.2
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0B2PJ97|A0A0B2PJ97_GLYSO Nuclear transcription factor Y subunit B-8; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
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LotjaGi1g1v0694000_LC.3
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
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LotjaGi1g1v0694000_LC.4
n.a. Nuclear transcription factor Y subunit B; TAIR: AT2G37060.1 nuclear factor Y, subunit B8; Swiss-Prot: sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8; TrEMBL-Plants: tr|A0A0S3RYL3|A0A0S3RYL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0694000_LC LjG1.1_chr1 126155704 126159736 -
2 domain predictions
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LotjaGi1g1v0774500.1
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134677702 134687442 -
2 domain predictions
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LotjaGi1g1v0774500.2
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134681999 134687442 -
2 domain predictions
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LotjaGi1g1v0774500.3
n.a. Nuclear factor Y subunit C; TAIR: AT1G08970.1 nuclear factor Y, subunit C9; Swiss-Prot: sp|Q8L4B2|NFYC9_ARATH Nuclear transcription factor Y subunit C-9; TrEMBL-Plants: tr|G7KYQ4|G7KYQ4_MEDTR Nuclear transcription factor Y protein; Found in the gene: LotjaGi1g1v0774500 LjG1.1_chr1 134685264 134686105 -
2 domain predictions
 –