Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0107500.2

Overview

Field Value
Gene ID LotjaGi6g1v0107500
Transcript ID LotjaGi6g1v0107500.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Cinnamoyl-CoA reductase-like protein; TAIR: AT5G58490.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1; TrEMBL-Plants: tr|I3SMX7|I3SMX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0107500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:24429175..24433750) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCGAAGGTGGTTTGTGTCACTGGAGCCAGCGGCGCCATCGGATCATGGGTGGTTAAGCTCCTCCTCGACCGTGGCTA CACCGTCCACGCCACCGTCCAAGATCTCAGTAACAATCAAACGCCTTACTTCTTTCTTACATAAACAAGAGAGTTTCATT CACAGCATTTTTCTCACACCCCATTTTCATGCATATGGTATAAAAGGAAGATAATTCTCTTCTTTTTGTCCTAATTACAT GGGATGTAAGTTCTCTGTTCTCACTCCCTTGTAACAACATGCAGTTGAAATTCAAGGGTAGGATAATAATATATAAATTA TAAGGGAAACATTGACTATAACATTAAAAATAACAATAAAAATCAGCATTAGCATAAATTTATCAATTAACTTTGTGGCG ATAATGTTGTGACGTGTTGCGTTGCCCTTTGCAGAGGATGAAAAAGAGACCAAACATCTGGAGGCAATGGAAGGAGCTAA GGGCCGTCTCCGCCTCTTCGAGATGGACCTTCTTGACACCAACTCCATCGCCACCACCGTGAAGGGTTGTAATGGCGTCA TACACCTTGCCTGTCCTAATGTCATTGGCCAAGTCACAGATCCAGAGGTTAAAAAAATTAAATTTTCATCACAAGAAAAA ACTTGAGTGTAGTGGGAAATTGGTCTACGAAAATGTTGGTCATTGCTACGCAGTAATGTAGATAAAGTTAGTTTTCATGA CGACATTCTTATCTTAAAAAAACTAATTTGACCGACATCGTAAACAATTAAAAATGATCAACGGACATGTTTTAAGTTCA AAGACGAGCTTGCTGATGTCAAACACTTATGAGTACCAATTTCATGGTCACTAGAAAAACTAATTGATACGAGAAAAAAT AAAGAAAATAAGAAATTGAGTGTGAAAAAATAAAGTAAAAGGATAGAAATTGAGACATGTGGGTGTGCACGTGCAGAAAC AAATATTGGAACCGGCAATAAAAGGGACAGTAAATGTTCTGAAGGCGGAGAAGGAAGCAGGGGCGGAGCGGGTGGTGGCG ACTTCGTCTATCTCCGCCATCACGCCGAGTCCGAATTGGCCAGCTGATAAGATCAAGGGAGAGGACTGTTGGACGGATCT TGAATACTGCAAGGAAAAGGGGGTGAGTTTTTTTTTCCTTTTCTTTTTTTAATGTGTTTTTAATTAATTGACAATATCCT GCTCCTGAGATATTCTTAGTTCTTACCCCTAGATAGATGAAAATTTATTTCTCTTTTTAACGGTTTTCTTTGTCTTTTTC TCTGTTCTTTTCAGTACATGCATAATTTCACTGTGATATTTCTGAGTCAAATAATTTTTTTCCATCTAAAAGTTAAATTT TATTTGATCCTTTAAAAAAATAGATTAACTTAGTGGTGGCGGTTAGGGTGCAAGTGTATTATAGGTCTTGCACCATATAA GAGCACATTTGGCCTGTTATAATAGGTAAGATTACCTGCTGAGAAAAAAAAAATATAGCATCTAATTACAAAAATACCCT CCTCTAAACTCAGATCTCCTTCCTGTAAGCTATGTAGATTTTCCTCCAATTTTTTTTTTAAATAATCAATCATCACGGAT CGTGGAGTGGAGATAGCTAGATACTCAACCCCCTCACTCCCACTGCCACCACCACACGTAACTTCCACCACTGATGTGAA TCACACACACCATTCACCAAACCAATTTAATAATGTTTGGTCTTAATCTCAAACCAAAATTCTCCACCACCACTGATTCC AATACTGGAATGGGTATACTACTAGTCTTGTTCCCTCAAGACAAATCCACCACCACCAACAAATTGACCTCTCTTTCAGA CTTTCACCATCAAAATCCCCTCCAAAACACAATCCGCCATTTCCATTTGTGTCATCCTCTTCACCACCCTCCTCCTCTTT ACTATCTCCACCATTCCCACCACCACCACCCCACCTTCTTCCTCTTCCACTACACGGCGACGCTACTCTCTTCTCTAGAA ACTCACTTTCGCCCTTCAAAAAATGGGCATTCTGTACAGAAGAGGCACCAGAGCATGTCTGATCTCCTCATCTACCACGT CCCCGATGAAACCCCAATCGAGGATTTCCGCCTCTTCCTCCGCCTCCTCCACCGCTCCTCCCTCACCGCCTCAACCGATG TCATTGGCCTCCGCTGGACCTGGAAAAGAAATCCTCCATGACCCTGGCTGATGGCGAGTGGCGACGAGCTTTCTACGAGC GACACAGCGGTTCGACGGCGGCGACGGCGAGATTGATGGTGGCTTACCTCTGGTGCTCCAACACCTCTCTCTATATCTCT CTCTCTCTCTCGTTCTGTATCTTGATCTTGTTGCTATGCTCGCGGTGGCTGCGAATGGAAATCCCATATCTAAAGTTGCT GAGGGAGGAATGAAGGAAGTTGCAAAGGGCTTTTGTGTCATTAAATTATTAAATTTAAAATATAATCAAAAAATATTTTA CCGGATAATCAAGTTTCCCTTTACCTCAGTGACACGTGTTGTGATGGTATTGGCCCTCAGAGGTATGGCACCGGTGCAAT ACCTAATGAGTATTGCTAGGTATTGCACCTTATCCTCCACCTAATTTATTTCTTAAAAAGTTAAGTGCTTTTTGTAGTAG TTTAAACCGTTATTAATGTATTTTGTGACGGTTAAAATTAGAACTAATACATAAAAACTGTCATAAAATGAACAATAATA ATTTTTTTTGAACGTTAAAATGAACAATAATGATCAATTTCACGTATTTTACTATTGTTGGGACAAAAGCTATAAATATT TTTTAGCGGTTTAAATCAAATTCACCTCTATTTAATAGATTAAAATCATATTTAACCCAATATTTTTTAATTGTCAATTA AAGAAACAATTAATAAAATGAAATAGACTAAAAAAAATTCATAATCAGGTTACATTGTAAACTACTTGCGGCACTTATGT TTGTGACGGTTTAAGACCACCGCAATTTATATTTTATCAATTTTTTCATTTTGTGGCAGTCTAATAAAGTTGCTGCAAAG TAAGTGTCTTGATGTGTTTTATATATTAGTGCTGAAAGGGAAAAAATTTAAAAAACTTCATCAACCATTCATTACCGTGC CTGTCTTATTCAACAACTGAATTATTGTAGTTCCATTTCTTTAAAATAAATGCCTGAATTTCCATTTCTTTGTAACACGT GGAGAAGTTATTAGTCACAGACTGAAATTGAAGTTATCTTTTTTTTTTTTTGGTCAATAAATTGAAGTTATCTAAATTGT CTTTTCTTGGAAGAACATTGTTTTCAACCGTCCAAGCTAATTTAAGTGGGCCATATATATTCTTTTGTTGTTAGTGGTTA TACTTTTTGTTTTGGATAAACATGGTGGGTCTAGTTGATTTGAGCCATTATTATTTTGTTGGGCCAGTTATACTATCCCA TTGCGAAGACACTAGCTGAAAAAGCAGGCTGGGAATTTGCAAAGGAAACAGGCTTCGATGTGGTGATGATAAATCCTGGC ACTGCCTTGGGCTCTCTTATTTCCCCAAGAATCAATTCCAGCATGGTTGTGCTTGCTGGCGTTCTCAAAGGTAAATGGGC TAAATTCATTAGCATCTCTAGCTTGTAGTTTTTTCTTGTTTGTTTTATATTCCCTTTGAAAATAATGACTAATTATCCCA CTATCTGACGTGAGAGTTATGTTGGTGAACAAATTGTAAATACTTTTATAAGCGACCTATGATATCGGAAGCATACTCTA ACCGGTGGTGGTTGCTAGAACCAAACCCACCCAAATTTTGTTGTCATTAATCAAAAAATATCAAATGTTATGCGTAACCT TTAAAAAGGAAAACTTAGCACTACTAAGCTCGTGTTATGTGTGAGTTCCCGGAAGGGGCAGACCCACTTTATGGATATAA TATAAATAATCCCACCTTTTATTTTGCATAAGGCTCGAACCGTTGACCTCAAAATCACATGTGAATAACATTATAGTGAG GGTCACCCTCGAACGTAATTCGAAAACAAATATACTTGTTAACTTTTTCTCAATGTATTTTTTATTCTCTGTCTATGATG CCTTTCTTTACATATTTTCTCATTTTTTGTTGGACATTGTTACAGGTGATAAAGAGACATATGAGGACTTCTTTATGGGA ATGGCTCACTTTAAAGATATTGCCTTGGCCCATATTTTGGCATTTGAGAACAAGAAGGCAGCTGGAAGGCACTTATGTGT GGAAGCTATTCGTCACTATAGTGATTTTGTGGCAATAGTTGCTGACTTATACCCTGAATATAATGTGGTTAGGTGAGTAT TCTACTAAACAATTGTACATAACACTTGAACAACTAGTACATTTTTTGATAATAAAATTAATATGTAATTTGAAATATAT AATAAAAACATATTTATTTTTCTTTTGCTTATAGGGTGACAAAGGATACCCAACCAGAGTTGTTGAGAGCAAATAATGCA TCCAAGAAGCTGATTGATTTAGGTCTAAACTTCACACCTGCTGAACAAATTATCAAGGATGCAGTGGAATGTTTGAAAAG CAAGGGTTATGTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0107500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGAAGGTGGTTTGTGTCACTGGAGCCAGCGGCGCCATCGGATCATGGGTGGTTAAGCTCCTCCTCGACCGTGGCTA CACCGTCCACGCCACCGTCCAAGATCTCAAGGATGAAAAAGAGACCAAACATCTGGAGGCAATGGAAGGAGCTAAGGGCC GTCTCCGCCTCTTCGAGATGGACCTTCTTGACACCAACTCCATCGCCACCACCGTGAAGGGTTGTAATGGCAAACAAATA TTGGAACCGGCAATAAAAGGGACAGTAAATGTTCTGAAGGCGGAGAAGGAAGCAGGGGCGGAGCGGGTGGTGGCGACTTC GTCTATCTCCGCCATCACGCCGAGTCCGAATTGGCCAGCTGATAAGATCAAGGGAGAGGACTGTTGGACGGATCTTGAAT ACTGCAAGGAAAAGGGGTTATACTATCCCATTGCGAAGACACTAGCTGAAAAAGCAGGCTGGGAATTTGCAAAGGAAACA GGCTTCGATGTGGTGATGATAAATCCTGGCACTGCCTTGGGCTCTCTTATTTCCCCAAGAATCAATTCCAGCATGGTTGT GCTTGCTGGCGTTCTCAAAGGTGATAAAGAGACATATGAGGACTTCTTTATGGGAATGGCTCACTTTAAAGATATTGCCT TGGCCCATATTTTGGCATTTGAGAACAAGAAGGCAGCTGGAAGGCACTTATGTGTGGAAGCTATTCGTCACTATAGTGAT TTTGTGGCAATAGTTGCTGACTTATACCCTGAATATAATGTGGGTGACAAAGGATACCCAACCAGAGTTGTTGAGAGCAA ATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0107500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSKVVCVTGASGAIGSWVVKLLLDRGYTVHATVQDLKDEKETKHLEAMEGAKGRLRLFEMDLLDTNSIATTVKGCNGKQI LEPAIKGTVNVLKAEKEAGAERVVATSSISAITPSPNWPADKIKGEDCWTDLEYCKEKGLYYPIAKTLAEKAGWEFAKET GFDVVMINPGTALGSLISPRINSSMVVLAGVLKGDKETYEDFFMGMAHFKDIALAHILAFENKKAAGRHLCVEAIRHYSD FVAIVADLYPEYNVGDKGYPTRVVESK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF51735
1 259 259 1.54E-45
IPR036291
Gene3D
G3DSA:3.40.50.720
2 266 265 2.6E-82 –
PANTHER
PTHR10366:SF627
3 258 256 1.6E-149 –
PANTHER
PTHR10366
3 258 256 1.6E-149 –
CDD
cd08958
5 257 253 1.05339E-124 –
Pfam
PF13460
9 170 162 4.2E-12
IPR016040

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0107500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…