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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0114600 |
| Transcript ID | LotjaGi6g1v0114600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter family protein; TAIR: AT2G29940.1 pleiotropic drug resistance 3; Swiss-Prot: sp|Q8S628|AB51G_ORYSJ ABC transporter G family member 51; TrEMBL-Plants: tr|K7MQ99|K7MQ99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0114600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:27395055..27396914) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGTATTAGTGGAATTTCTCCAATTCCTGTTGGGTACAATCCAGCTACTTGGATGCTTGAGGTTACCACACCTGCTAT TGAAGAGAAAATTGGCAAAGACTTTGCTGATATTTACGAATGTTCTGACCAATTTAGGCAGGTGGAAGCTTCTATTAAAC AATATGAACAACCTCCTGCTGGATCACAACCACTTAAGTTTGACACGTTATATTCCCAAAACACATGGTCGCAATTTCAA AGGTGTTTATGGAAGCAAAATCTTGTGTACTGGAGAAGTCCATCATACAATGTAATGAGGCTATTATTTACCATAATAAG TGCTTTGATATTTGGTTCTGTGTTTTGGGATATGGGTACAAAAAGGTATATATGTTGCATCCTCCTCTATGATCGATCTC ATTTGTCTTTCTATAAAGTATATTGTCAATTAAAACAAAGGTAACCGATCGAATATTCTACAGGGAATCAACCCAACAAG TGTTTGTGATAATGGGTGCACTTTTTTCTTCATGCTTGTTCCTTGGAGTGAATAATGCATCTTCTGTTCAACCTATTGTT TCGGTGGAAAGGACAGTTTTTTATAGAGAGAAAGCAGCTGGAATGTATTCTCCAATTGCATATGCAGCAGCCCAAGTAGG TGTTTTCAATGTATTGGAAACATGGTTTTCAACGTTAAGTGTAGATTACATGTATATCATGATTACTAACTAATCTAATT CACAGGGGCTGGTAGAGATCCCATACATTGCAGTTCAGACAATATTATTTGGTGTAATAACATATTTCATGGTCAATTTT GAAAAAAATATAGGTAAGATCGATCTCAACTTTACATATTACAATTAAAACTGAATGTAATTGTTCCTTCTACATAGCAT AGTATGGGATGTCAGTGTAAAACAATTTTACACTGACGATGCATCACAGTTAAACTCATTACTAATACAATTTCATGTTT TTTTTTCTCTATGCAGGAAAGTTTGTGCTATATCTTTTGTTCATGTTCCTCACATTTACCTACTTCACCTTTTATGGTAT GATGGCTGTCGGTGTCACACCCACCCAACATTTAGCAGCTGTTACTTCTTCTGCATTTTACTCTCTATGGAATCTTGTAT CAGGATTTCTTATTCCAAAATTTGTGAGTGAACATACTATATCTCTATCTATGCACTTAAATGGATTCATATTTTTATTT GTCCCTAACGCGAATGAGCATTGCAATGAATGTTTCAGTATATTCCTTCATGGTGGATTTGGTTCCATTATCTCTGCCCA GTTGCTTGGACACTACGTGGTATTGTAACATCTCAACTTGGTGATGTGCAAGACATAATAGTGGGACCGGGATTTAGGGG CACTGTGCAAGAGTACATATCTGTTACTCTTGGATATGATCCTACAATTAATGGAGTTTCAGCAGTGTTGCTATCAGTAA TTGTGCTTGCCTGCTTCAACATCTTCTTCTTTGGCTCTTTTGCGATATCAGTTCAAGTTTTGAATTTCCAAAGAAGATGA TTGAATGTTTAAATAGTTGAGTTGAAGACTAGATAAGCCATTGCTGATCATCATGATGGTGATAGTATGATACTTGCTTC AGATTAAACAATCTTCACTATCTTCACTGCTGAGTAGTCTTGAACTGAAAATGGACTAAGAAAGCATCACATGGAGTGCA AGTTTGGTGGTCGAAGATATACGTTGACATGGTTCTTTAACTGTGTCACTTGAGGTGAAACTTTGTTGCACTTTGTTTTC ATTTCACATCAATAATTGTAGAGGATCCAACTTATGTAGTCAATTAGGAACAGAGATTAGCAGGGTTACAAGGATATTGA ATATTGTATTTAAAAAAAAT
CDS sequence (LotjaGi6g1v0114600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCACTTTTTTCTTCATGCTTGTTCCTTGGAGTGAATAATGCATCTTCTGTTCAACCTATTGTTTCGGTGGAAAG GACAGTTTTTTATAGAGAGAAAGCAGCTGGAATGTATTCTCCAATTGCATATGCAGCAGCCCAAGTAGGTGTTTTCAATG GGCTGGTAGAGATCCCATACATTGCAGTTCAGACAATATTATTTGGTGTAATAACATATTTCATGGTCAATTTTGAAAAA AATATAGGAAAGTTTGTGCTATATCTTTTGTTCATGTTCCTCACATTTACCTACTTCACCTTTTATGGTATGATGGCTGT CGGTGTCACACCCACCCAACATTTAGCAGCTGTTACTTCTTCTGCATTTTACTCTCTATGGAATCTTGTATCAGGATTTC TTATTCCAAAATTTTATATTCCTTCATGGTGGATTTGGTTCCATTATCTCTGCCCAGTTGCTTGGACACTACGTGGTATT GTAACATCTCAACTTGGTGATGTGCAAGACATAATAGTGGGACCGGGATTTAGGGGCACTGTGCAAGAGTACATATCTGT TACTCTTGGATATGATCCTACAATTAATGGAGTTTCAGCAGTGTTGCTATCAGTAATTGTGCTTGCCTGCTTCAACATCT TCTTCTTTGGCTCTTTTGCGATATCAGTTCAAGTTTTGAATTTCCAAAGAAGATGA
Protein sequence (LotjaGi6g1v0114600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALFSSCLFLGVNNASSVQPIVSVERTVFYREKAAGMYSPIAYAAAQVGVFNGLVEIPYIAVQTILFGVITYFMVNFEK NIGKFVLYLLFMFLTFTYFTFYGMMAVGVTPTQHLAAVTSSAFYSLWNLVSGFLIPKFYIPSWWIWFHYLCPVAWTLRGI VTSQLGDVQDIIVGPGFRGTVQEYISVTLGYDPTINGVSAVLLSVIVLACFNIFFFGSFAISVQVLNFQRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 164 | 164 | 5.1E-37 | ||
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 231 | 231 | 1.7E-96 | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 231 | 231 | 1.7E-96 | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 57 | 39 | - | – | |
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 58 | 78 | 21 | - | – | |
| Phobius | 79 | 84 | 6 | - | – | |
| Phobius | 85 | 109 | 25 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Phobius | 110 | 114 | 5 | - | – | |
| Phobius | 115 | 136 | 22 | - | – | |
| TMHMM | 117 | 136 | 20 | - | – | |
| Phobius | 137 | 142 | 6 | - | – | |
| Phobius | 143 | 161 | 19 | - | – | |
| TMHMM | 143 | 162 | 20 | - | – | |
| Phobius | 162 | 200 | 39 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 201 | 226 | 26 | - | – | |
| Phobius | 227 | 231 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0114600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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