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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0204100 |
Transcript ID | LotjaGi6g1v0204100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fatty-acid desaturase; TAIR: AT4G30950.1 fatty acid desaturase 6; Swiss-Prot: sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic; TrEMBL-Plants: tr|I1JGN9|I1JGN9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0204100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50143576..50144622) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCACTTTCACTGTGGTACATCATACAGCACCACACATACCATTCAAATCCTCTGGTGAGTGGAATGCTGCACAAGC ACAGCTTAATGGGACTATTCATTGTGATTATCCTAAATGGTAATAATTCTTTTTCTTTCCTTCTACTGCAATGTGCATAC TTTATAGTACTATGGTGCCATTTACTCTCACTTTTATTATTCATGTTTGACATATTCTATTATTGTTTGCAATTAGATCT CTACTATCATCCTTGAATATATTAAATTTTATAATAATCACTCATATTGTCCATATGCCATGAATGGCCTATTGGATTTT CTGGCATTAATATGCAGCCATAAACAGGATATTTGTTCTCTTTTTTTTTTTTTGAGGTTGATATTTGTTCTCTATTCTTT CCACTTTTTAATCAAAATGAAGACTTTCAAATTTCAATGAACATGTTTGGAGACGCTGAAAAATAACCATGAAGCCAAAA TTATAGTGGACAGCCACAAAAACTAAAGGAAGTTGCCTCTGTTACCATGATTTTGGTTCACTGTGATTTTCCACCATGTA TCCAAACATGCACGATATTAACTTAATACCTACAGAAATTATCTAACTCCTAATTTTGTTAACAGGGTTGAGATTCTGTG CCACGACATCAATGTCCATATTCCACACCATATATCCCCAAGGATACCATGGTATAACCTACGAGCAGCTCATAAGTCTC TACAAGAAAATTGGGGAAAGGTAATAAGATGAATAAAAGCATGCTTTGTCAATAAAACAAAACATATCATAGGCATAATC CAAATAAAAGATTTGAAGCAAGTTTATTTCAATCCTACTAATTTGGATATTCATTGTTTGATTCTAATTTGTATTGGATG GACAGTATATGAACGAGGCTACTTGGAACTGGAGATTGATGAAGACAATCATGACTGTGTGCCATGTGTACGATAAGGAG AGAAATTATGTTGCTTTTGATGAACTTTACCCTGAAGAATCTCGTCCAGTTACATTGTTGAGGAAAGCCATGCCTGATTA TGCGTGA
CDS sequence (LotjaGi6g1v0204100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACTTTCACTGTGGTACATCATACAGCACCACACATACCATTCAAATCCTCTGGTGAGTGGAATGCTGCACAAGC ACAGCTTAATGGGACTATTCATTGTGATTATCCTAAATGGGTTGAGATTCTGTGCCACGACATCAATGTCCATATTCCAC ACCATATATCCCCAAGGATACCATGGTATAACCTACGAGCAGCTCATAAGTCTCTACAAGAAAATTGGGGAAAGTATATG AACGAGGCTACTTGGAACTGGAGATTGATGAAGACAATCATGACTGTGTGCCATGTGTACGATAAGGAGAGAAATTATGT TGCTTTTGATGAACTTTACCCTGAAGAATCTCGTCCAGTTACATTGTTGAGGAAAGCCATGCCTGATTATGCGTGA
Protein sequence (LotjaGi6g1v0204100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTFTVVHHTAPHIPFKSSGEWNAAQAQLNGTIHCDYPKWVEILCHDINVHIPHHISPRIPWYNLRAAHKSLQENWGKYM NEATWNWRLMKTIMTVCHVYDKERNYVAFDELYPEESRPVTLLRKAMPDYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 129 | 129 | 8.9E-71 | – | |
PANTHER | 1 | 129 | 129 | 8.9E-71 | – | |
Pfam | 4 | 79 | 76 | 6.3E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi6g1v0204100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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