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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0245600 |
| Transcript ID | LotjaGi6g1v0245600.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar-sorting receptor; TAIR: AT1G30900.1 VACUOLAR SORTING RECEPTOR 6; Swiss-Prot: sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6; TrEMBL-Plants: tr|A0A151SZG3|A0A151SZG3_CAJCA Vacuolar-sorting receptor 7; Found in the gene: LotjaGi6g1v0245600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55777905..55782275) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCAT CACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGAT ACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTT CGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGGTATTTCCAATGTCCAATCCTCTTCCTTCTTTTCAACCGT TGACTTTCTTTATTTATCATCTGCTCTAAATTTCATCTACCCCTACCATGCTAATTTAATGTTAGCTTTCTAATTATGCC ACTATGCTGTTTTATTTATTCAATTTACTCTTATATTATAAATATTAACCTCTGCTCTGTTTCCCCCTTTTTATTGCTTT TTGCTGTTTCATAGATCCCCCCGTTTAGATGCAGAAGCTTATTTGACTTTATATTTTAGCATAAGCACTCATGCTGACTT TATATTATAGCATACGCGGTCATGCATGTGTTTCAGAGAGTTTATGTAAATAGTTTATGACATTCTTATAAGTTGTTTTG AGGTTATTTTCGTAAGCTGTTTGGATTAACTTATAAATAAGAGTTTATGCTTACCTATCACATCTTTTCAGCTTATTTCA ATAAACGCTTATTTCCATAAGTACTTAATTAAGTTATTTTCTCAAACGCACCTACAGAACACTTATTGGAGCTTATTATC TACTAGAAAAAAGCACCAAATAAACTCTAATAAGTACTATTTGTTCTGCATCTAAATGGGGTCATGGTCCTGCCATTAGG TAGTTATATTAAGCCTAATAGGGCCTGTTATGAGCGGCTGTAGATATGTTGCTTCAATGATATAATAGGTTCATCCATTG ATAGATTCTTTTCTCATATTACTTTTCTTATTTTTCTTGAATTTCTTTTATTTTTGTTAATGAAAATATAGGCTACTTCA GCAATTCACTGGTAAAGTACTTTTTTTGACCTTTGATCCTCGTTTTCATAAGAATCTCTAATTAATCTCTAAACTACATC ATAATATATTTTTCTTGCTTTTATGATATCCAATCTGTCTCTTGAATGCCAACAACAGAACTAGTCTTAAAGGAAAAAGT TCCTTACATATGATTGATTAAAAAACCAATAATAAAAGCTTCAAGAATGCTTCTGTATTAATTCTTTGAAATCAAGTTTC ATAATGCTTACTGGCAATGGTTATTTGCAATTGTAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGCGGGA GCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATGCTGA CGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTAAACA ACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTTCTGG ACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGAT TCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGCAGTC AGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCAAGGG AAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCTGGTG GGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTCATGG AATCATTAGGTAAATGCCATTTTTTGATATTTTTGTGCATTGGATTCTGTTGTTTTCTCTTATTTTTAAAACGTTTGATC TTAATATTACAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTTA AAGAATGAGCAACAAGTCCAGGTCAAATATTTAATATTTACTGCTATGCCTTTTTAAAATTAATAAAATCTGTAAACTGA CATCAGAAATGAAGCACCAGATCCAGGTGATTAACTGATTTTTGCTTGATTATCAAATATTTCATATTCTGATGTTTCAC TTGTGATATTCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATGTCCAATATA GAGGTTAGTTACTTAGAGTCTGTTTAGATAAGGACCAAAGAGCACTTATTGGAGCTTCTCTACTGGAAAAAATGCACAAG ATAAGCTCCAATAAGTGCTCTTTGGTCCGCAACCAAATGGACGCTTAAATTTCTATTCAATAGATATTCTGTATGAATGC TCGCAAGTGTAAGAAGGAAAATTAGAGAGAATTTCTGTCCTGAAGATTTTGTTTGTTTTGTATGAAGGAAAATTGGAGAG AACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCAGTTTGTTTAAGTGGAGGTAAGTGTG CTTAGTATTTCATTAAATGAACTGCACCGATGATACATTCTTTGAGTACTTAAAATCTTCTCTAAGAGTGGTATTCTGAA CTTTACATACTGGTTTAACAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCT AGCATAAGTGCTTGCAAGGTATAGATAAGAAATTTCTAGCGCCACTTTTTCACCCAATTATAATTTCTATGTGGTTGGCT GCAAGCTAAACCATTATCTTTGCCAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTAT AGAGGTGATGGTTATGCATCATGTGAAGGTATGCCTTTTCATATTTAACAAGTTTCCTCTTCCTTTTACTTTGGAGTATC AGAGTCTTATATACTCTATCTCATAAAACATGATAGCTATGGAATCCTGAGATTAAGATAACATTTATTTTATTATTGGT AATTCACCCTATATGCAACTTTCAGGTCAAAAGTTTAAGAAAATTCATTTCATATTGTAATATCAGTCCAAATAAAGAAG TTCTGATACTTTATTACAATGTGGATGGAGATTTGTTGCTGAGATGCTTACCCTTTTCCTTATTTGACAGCTTTTGGACC TGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTAGCTTTCTCAGCTTGCTCAGTTCAGT ACTACTTATCCAAATCTTCATTTTTTTTTTGGTTGGTAAAGATTTATGGTACCACTTTCCTGAACATGCCTCAAGGCTAA CTGGATTATCTTGATTTCCCTTTTTGTATAAAGGAATCAGTGGTAAATGGCTGTAAGTGTCCAGTTGGGTTTCGCGGAGA CGGTATTAATAAATGTGAAGGTAACATTTGTTTTCACTGTGGCAATTTCAAAATTTATTTCTCTTTTTCTATGATCAATG TTGGAAAAATATAACTCTATTCAAAACCTCTTTTGTTCTGATCCAGATGTTGATGAATGTAAGGAAAAAAGTGCATGTCA GTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCGGTTACGATTGTAAGTGCAAAGGAGATCTTCTATACATAAAGGACC AAGATACTTGTATTGGTAAGATTTTAAGATCAAACTATGAAAGATTCTTGTTAGTGAGAAATAGTAAATAGCATCGCAGA AAATTAAGATCACAGTACATGATTAGAATTTTGCTTTCGATCTCGCAGAAAGAAGTGGATCGAAATCTGGACGGTTTCTT GCCTTTGTGGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAGGCTCAGGGTAAGCCT ATTCATTCTCAACTACAAATTATGAACACACCATTTATGTTAAATTGGTATGTAATTACATTTTTCTTGTTTTTGTAGAC TTACATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAG CTCAGCCTTTACGACAAGGCGAGGTATAAGGTATTCAATTATTCATCTCCTAAACTGCTTCTTTTGAGATTACTTTTCTG GAAAACAATCTTCTTATTTTGCTTCTATCTGCATTCTGCCAACAGAGATAG
CDS sequence (LotjaGi6g1v0245600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCAT CACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGAT ACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTT CGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGC GGGAGCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATG CTGACGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTA AACAACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTT CTGGACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTC AGATTCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGC AGTCAGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCA AGGGAAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCT GGTGGGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTC ATGGAATCATTAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTT AAAGAATGAGCAACAAGTCCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATG TCCAATATAGAGGAAAATTGGAGAGAACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCA GTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCTAGCAT AAGTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTATAGAGGTGATGGTT ATGCATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTA GCTTTCTCAGCTTGCTCAGTTCAGTACTACTTATCCAAGAATCAGTGGTAA
Protein sequence (LotjaGi6g1v0245600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPLFTLLFFLLSSVHGRFVVEKNSITVLSPHKLRAKRDGAIGNFGLPNYGGYIIGSLVYPDKDSHGCHEFEGDKPFKF RSNRPTIVLIDRGECYFALKVWHAQLAGAAAVLVTDSIEESLITMDSPEESLDADGYIEKIVIPSALIEKSFGDALKEAL NNKDEVLLRIDWRESMPHPDDRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPRPFVQS SQCKSQCINNGRYCAPDPEKDFGEGYQGKDVVYENLRQLCVHRVANESSRSWVWWDYVTDFHVRCSMKEKRYSKECAETV MESLDLPIEKIKKCMGDPEADVENEVLKNEQQVQVGRGSRGDVTILPTLVINNVQYRGKLERTSVLKAVCAGFKESTEPP VCLSGDIETNECLERNGGCWQDKNASISACKDTFRGRVCECPVVNGVQYRGDGYASCEAFGPARCSLNHGGCWSETRDKL AFSACSVQYYLSKNQW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Gene3D | 17 | 179 | 163 | 2.9E-47 | – | |
| Phobius | 19 | 496 | 478 | - | – | |
| PANTHER | 23 | 488 | 466 | 4.8E-191 | – | |
| PANTHER | 23 | 488 | 466 | 4.8E-191 | – | |
| Pfam | 57 | 156 | 100 | 1.0E-11 | ||
| SUPERFAMILY | 86 | 166 | 81 | 6.15E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0245600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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