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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003137
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 94 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.583s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072829.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357462409|ref|XP_003601486.1| chr0 27130021 27142128 +
2 domain predictions
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Lj0g3v0097469.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 41211199 41212725 -
2 domain predictions
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Lj0g3v0171769.1
n.a. PREDICTED: vacuolar-sorting receptor 7-like [Glycine max] gi|356532605|ref|XP_003534862.1| chr0 82350752 82356959 -
2 domain predictions
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Lj0g3v0186329.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502152770|ref|XP_004509085.1| chr0 90756310 90759299 +
2 domain predictions
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Lj0g3v0214489.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502176589|ref|XP_004515893.1| chr0 108687212 108691226 +
2 domain predictions
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Lj0g3v0241589.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502099703|ref|XP_004491541.1| chr0 125326389 125327674 -
2 domain predictions
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Lj0g3v0252169.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357477077|ref|XP_003608824.1| chr0 130739846 130742009 -
2 domain predictions
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Lj0g3v0281099.1
n.a. PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] gi|356568398|ref|XP_003552398.1| chr0 145737865 145746808 -
2 domain predictions
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Lj0g3v0323379.1
n.a. PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] gi|356497238|ref|XP_003517469.1| chr0 168871173 168876311 +
2 domain predictions
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Lj0g3v0335989.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357507043|ref|XP_003623810.1| chr0 176023414 176025776 -
2 domain predictions
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Lj0g3v0354669.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357453673|ref|XP_003597117.1| chr0 186828692 186831535 +
2 domain predictions
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Lj1g3v2482520.1
n.a. PREDICTED: vacuolar-sorting receptor 1-like [Cicer arietinum] gi|502104515|ref|XP_004492565.1| chr1 28815848 28821691 -
2 domain predictions
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Lj1g3v3329680.1
n.a. PREDICTED: signal peptide peptidase-like 2B-like [Glycine max] gi|356527443|ref|XP_003532320.1| chr1 37768829 37777482 +
2 domain predictions
 –
Lj1g3v4528380.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357510203|ref|XP_003625390.1| chr1 53301536 53304674 -
2 domain predictions
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Lj1g3v4667840.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356535933|ref|XP_003536496.1| chr1 55305206 55308704 +
2 domain predictions
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Lj1g3v4667850.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356535933|ref|XP_003536496.1| chr1 55305206 55307800 +
2 domain predictions
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Lj1g3v4667860.1
n.a. n.a. chr1 55306973 55308704 -
2 domain predictions
 –
Lj1g3v4763600.1
n.a. AMP1-like carboxypeptidase [Lotus japonicus] gi|429535563|dbj|BAM72481.1| chr1 57126626 57135642 +
2 domain predictions
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Lj1g3v4763600.2
n.a. AMP1-like carboxypeptidase [Lotus japonicus] gi|429535563|dbj|BAM72481.1| chr1 57126626 57132386 +
2 domain predictions
 –
Lj2g3v0836920.2
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356531311|ref|XP_003534221.1| chr2 13026250 13031062 -
2 domain predictions
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Lj2g3v0878930.2
n.a. PREDICTED: probable glutamate carboxypeptidase 2-like [Cicer arietinum] gi|502098190|ref|XP_004491175.1| chr2 13493621 13497974 +
2 domain predictions
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Lj2g3v0889190.2
n.a. PREDICTED: probable glutamate carboxypeptidase 2-like [Cicer arietinum] gi|502098190|ref|XP_004491175.1| chr2 13597450 13600785 +
2 domain predictions
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Lj2g3v1573060.1
n.a. PREDICTED: subtilisin-like protease-like isoform X1 [Cicer arietinum] gi|502161828|ref|XP_004512297.1| chr2 25014942 25035430 -
2 domain predictions
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Lj2g3v2002900.1
n.a. subtilase [Lotus japonicus] gi|163644224|dbj|BAF95755.1| chr2 30541559 30543830 +
2 domain predictions
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Lj2g3v2002910.1
n.a. subtilase [Lotus japonicus] gi|163644224|dbj|BAF95755.1| chr2 30547801 30550053 +
2 domain predictions
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Lj2g3v2002920.1
n.a. subtilase [Lotus japonicus] gi|163644223|dbj|BAF95754.1| chr2 30552812 30556152 +
2 domain predictions
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Lj3g3v0200840.1
n.a. subtilase [Lotus japonicus] gi|163644220|dbj|BAF95753.1| chr3 1256136 1258943 -
2 domain predictions
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Lj3g3v2340910.1
n.a. PREDICTED: signal peptide peptidase-like 4-like isoform X1 [Cicer arietinum] gi|502157171|ref|XP_004510782.1| chr3 29380751 29390251 +
2 domain predictions
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Lj3g3v2575850.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502156610|ref|XP_004510560.1| chr3 31387368 31390196 +
2 domain predictions
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Lj3g3v2576790.1
n.a. PREDICTED: subtilisin-like protease-like isoform X1 [Cicer arietinum] gi|502156502|ref|XP_004510506.1| chr3 31871435 31874347 +
2 domain predictions
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Lj3g3v2576800.1
n.a. n.a. chr3 31871949 31875140 -
2 domain predictions
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Lj3g3v2576800.2
n.a. n.a. chr3 31871949 31875140 -
2 domain predictions
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Lj3g3v2995720.1
n.a. subtilase [Lotus japonicus] gi|163914235|dbj|BAF95887.1| chr3 37208090 37213269 +
2 domain predictions
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Lj3g3v3528590.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356544850|ref|XP_003540860.1| chr3 43170112 43173227 -
2 domain predictions
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Lj4g3v1287360.1
n.a. subtilase [Lotus japonicus] gi|163644224|dbj|BAF95755.1| chr4 18987730 18989982 -
2 domain predictions
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Lj4g3v1327500.1
n.a. subtilase [Lotus japonicus] gi|163644220|dbj|BAF95753.1| chr4 19524119 19525705 +
2 domain predictions
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Lj4g3v1387920.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502176589|ref|XP_004515893.1| chr4 21200985 21203307 -
2 domain predictions
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Lj5g3v0308390.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502125650|ref|XP_004499011.1| chr5 2859229 2863736 -
2 domain predictions
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Lj5g3v0308400.1
n.a. PREDICTED: subtilisin-like protease-like [Cicer arietinum] gi|502125650|ref|XP_004499011.1| chr5 2859229 2864080 -
2 domain predictions
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Lj5g3v1869790.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max] gi|356576139|ref|XP_003556191.1| chr5 26669186 26673277 -
2 domain predictions
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Lj5g3v1869790.2
n.a. PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max] gi|356576139|ref|XP_003556191.1| chr5 26669186 26673277 -
2 domain predictions
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Lj5g3v2099540.1
n.a. PREDICTED: vacuolar-sorting receptor 1-like isoform 1 [Glycine max] gi|356536097|ref|XP_003536576.1| chr5 30042089 30047673 +
2 domain predictions
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Lj5g3v2302910.1
n.a. PREDICTED: signal peptide peptidase-like 5-like isoform X1 [Cicer arietinum] gi|502121709|ref|XP_004497418.1| chr5 34105526 34112112 +
2 domain predictions
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Lj6g3v1177370.1
n.a. Subtilisin-like protease [Medicago truncatula] gi|357450031|ref|XP_003595292.1| chr6 14459080 14461991 -
2 domain predictions
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Lj6g3v1966480.1
n.a. PREDICTED: subtilisin-like protease-like [Glycine max] gi|356546528|ref|XP_003541678.1| chr6 22545940 22551641 -
2 domain predictions
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LotjaGi1g1v0011700.1
n.a. Subtilisin-like protease; TAIR: AT5G59810.1 Subtilase family protein; Swiss-Prot: sp|I1N462|SBT1_SOYBN Subtilisin-like protease Glyma18g48580; TrEMBL-Plants: tr|G7K4U2|G7K4U2_MEDTR Subtilisin-like serine protease; Found in the gene: LotjaGi1g1v0011700 LjG1.1_chr1 1448836 1456730 -
2 domain predictions
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LotjaGi1g1v0457300.1
n.a. Vacuolar sorting receptor; TAIR: AT3G52850.1 vacuolar sorting receptor homolog 1; Swiss-Prot: sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1; TrEMBL-Plants: tr|G7KY61|G7KY61_MEDTR Vacuolar sorting receptor; Found in the gene: LotjaGi1g1v0457300 LjG1.1_chr1 96060339 96067113 -
2 domain predictions
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LotjaGi1g1v0457300.2
n.a. Vacuolar sorting receptor; TAIR: AT3G52850.1 vacuolar sorting receptor homolog 1; Swiss-Prot: sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1; TrEMBL-Plants: tr|G7KY61|G7KY61_MEDTR Vacuolar sorting receptor; Found in the gene: LotjaGi1g1v0457300 LjG1.1_chr1 96061450 96066664 -
2 domain predictions
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LotjaGi1g1v0466800.1
n.a. Subtilisin-like protease; TAIR: AT1G01900.1 subtilase family protein; Swiss-Prot: sp|Q84WS0|SBT11_ARATH Subtilisin-like protease SBT1.1; TrEMBL-Plants: tr|I1JDQ1|I1JDQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0466800 LjG1.1_chr1 97597350 97600864 +
2 domain predictions
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LotjaGi1g1v0466800.2
n.a. Subtilisin-like protease; TAIR: AT1G01900.1 subtilase family protein; Swiss-Prot: sp|Q84WS0|SBT11_ARATH Subtilisin-like protease SBT1.1; TrEMBL-Plants: tr|I1JDQ1|I1JDQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0466800 LjG1.1_chr1 97598265 97600613 +
2 domain predictions
 –