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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0257600 |
| Transcript ID | LotjaGi6g1v0257600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-glucanase; TAIR: AT4G16260.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q03467|E13B_PEA Glucan endo-1,3-beta-glucosidase; TrEMBL-Plants: tr|I3SKZ9|I3SKZ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0257600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57041957..57044321) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAATCATGAATGTCAAAGACCAAGACTTTTTCATGGTGAACCCGAGCCAAAAAAGATAATTAAGCATTGTATATAT ATATATCTATTATGCTGGTGAACTGAAAGATATTTTACTACTTAAATTTGTATTATAATAATTCAAATTGATAGTAAGGT ATGGTCAGCGAGCTGTGTATATAAACATTTGTATGCAAGAGAACAAAACTCGATCAGTGCCCTCCTCAGAGTGCTAATTA ATCATGTCTTCCTTCACTAGAACCCAGTGCTTCTCATTGGCTACCCTCCTCCTTCTATTGACAACAAATCTTCACATTGC AGGTCAGTCTATCTCTCTCTTTTGCGCATGCATGCATTCCATTAGGGGAAATATTTGCTGCTTGATCTAGAATTGTGCCT TTCAATTCACGCTGAACTAAGATACTAAAACTTTGCTATATTTGTTTGAATTTTGGGGTGTGTGATTTCCCTTTTGGGGT TTTAATTTGCCTCACACACCAATGGATCTTGCTTGGTCAACAATCAATTTTCAATGTGATTATTATATTTAAAGAATCTC GATCGATCGCATGATGAAGTTCGGACAATTTCAATTTTAGTGTTATATATGTTGCTAATATTTGAATCATCTCATCTTAT AACTGAAATTTCTTGACTCGAGCGACAAAAAAATTATATATACATATGCCCTTAATTGAAGTATATATGTATCATTTTTA AGTCCAACACTAATTATATATGTCCATTCAATTTTTGTTGTTGGCTAGCAGATGCTCAAATAGGTGTTTGTTATGGCATG ATGGGCAACAACCTCCCATCGGCAAACGAAGTTGTTGCTCTTTACAAATCAAATAACATCCGGAGAATGCGCCTCTATGA TCCAAACCAAGCAGCCCTCCAAGCCCTTCGAGACTCCGGTATCGAGCTCATCCTCGGTGTTCCCAACTCCGACCTCCAAA GCCTCGCCACCAACGCCGACAACGCACGCAACTGGGTGCAGAGAAACGTCCTCAACTTCTGGCCAAGCGTTAGGATCAAG TACATCGCGGTCGGCAATGAAGTGAGCCCTGTCGGAGGCGCCCCAACCCAATGGATGGCACAATATGTTCTCCCTGCCAC CCAAAACATATACCAAGCCATAAGAGCACAGGGTCTCCATGACCAAATCAAGGTCACAACCGCAATTGACACGACCCTCA TTGGAAACTCTTACCCTCCATCACAAGGATCCTTCAGGAGTGATGTGAGGTCCTACCTTGACCCTTTCATAGGCTACTTG GTCTATGCAGGAGCACCTCTACTTGTCAATGTGTACCCTTACTTCAGCCATATTGGTAAGTGGGGCATGTATATATCACA AAGAGTAACATATTTTTCAACTTAAACATCAAGACATTAGGTGTATGAATCTCTTCACCGCCACACTGAACTAGGTTTAA AATGAGAGTATGTATTCACTTTATTTTTCACCATATATTGTTAATTTTATTTTTACTCACACTTGAATTCTCCGCAGGTA ACCCACGTGACGTTTCACTTTCCTACGCGCTCTTCACATCCCCAAACATCGTCGCACAGGATGGCCAATACGGGTACCAG AACCTGTTTGATGCAATGCTTGACGCAGTTCATGCAGCAATTGATAACACCAAGATTGGTTATGTGGAGGTTGTTGTGTC TGAGAGCGGGTGGCCTTCCGATGGAGGCTCCGCCACGTCATATGACAACGCGAGAATCTACCTTGATAATTTGATTCGTC ACGTTGGTAGAGGTACTCCGAGGAGGCCAAACAAGCCTACAGAGACTTACATTTTTGCCATGTTTGATGAGAATCAGAAG AGCCCTGAATATGAGAAGCATTTTGGGTTGTTCTCTGCTAACAAACAAAAGAAGTATCCATTTGGATTTGGTGGAGAAAG GAGATGGGGAGTTTTGGGTGATGAGTTCAATGCAACCTCCACCGTTTCCCTTAAGAGTGACATGTAAGGTTGTCATTATG ATGATGGGATTCAAGTCCTCAAAGTCTTCCTGGTTTTTTCCTTAAAATAAGACACGGTCATGTTTGTTTGGTTTTGTATC CTTAGTTCTCTGGATGAGAATGGTGTTGTAATATATTGCTAAATTCCACTTGAGTGACGTTTGAAAAAATATGTATAATT GTGCATTTTGGAAGTTTTAACATCACCACAATTATTGACGTCAGAATTAACATCACCTTAATTACCTAAGTGCCAAGCAA CGTTGATGAATCTTTTTGGAAAAAAGTTAAGCAACACTTAAAAACTTAATCTCTATTATAATATACCAACCAATTACATC ATATGAGTGACTAAATTTTCTATGACTATCTGAAATTATTCTGAA
CDS sequence (LotjaGi6g1v0257600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCCTTCACTAGAACCCAGTGCTTCTCATTGGCTACCCTCCTCCTTCTATTGACAACAAATCTTCACATTGCAGA TGCTCAAATAGGTGTTTGTTATGGCATGATGGGCAACAACCTCCCATCGGCAAACGAAGTTGTTGCTCTTTACAAATCAA ATAACATCCGGAGAATGCGCCTCTATGATCCAAACCAAGCAGCCCTCCAAGCCCTTCGAGACTCCGGTATCGAGCTCATC CTCGGTGTTCCCAACTCCGACCTCCAAAGCCTCGCCACCAACGCCGACAACGCACGCAACTGGGTGCAGAGAAACGTCCT CAACTTCTGGCCAAGCGTTAGGATCAAGTACATCGCGGTCGGCAATGAAGTGAGCCCTGTCGGAGGCGCCCCAACCCAAT GGATGGCACAATATGTTCTCCCTGCCACCCAAAACATATACCAAGCCATAAGAGCACAGGGTCTCCATGACCAAATCAAG GTCACAACCGCAATTGACACGACCCTCATTGGAAACTCTTACCCTCCATCACAAGGATCCTTCAGGAGTGATGTGAGGTC CTACCTTGACCCTTTCATAGGCTACTTGGTCTATGCAGGAGCACCTCTACTTGTCAATGTGTACCCTTACTTCAGCCATA TTGGTAACCCACGTGACGTTTCACTTTCCTACGCGCTCTTCACATCCCCAAACATCGTCGCACAGGATGGCCAATACGGG TACCAGAACCTGTTTGATGCAATGCTTGACGCAGTTCATGCAGCAATTGATAACACCAAGATTGGTTATGTGGAGGTTGT TGTGTCTGAGAGCGGGTGGCCTTCCGATGGAGGCTCCGCCACGTCATATGACAACGCGAGAATCTACCTTGATAATTTGA TTCGTCACGTTGGTAGAGGTACTCCGAGGAGGCCAAACAAGCCTACAGAGACTTACATTTTTGCCATGTTTGATGAGAAT CAGAAGAGCCCTGAATATGAGAAGCATTTTGGGTTGTTCTCTGCTAACAAACAAAAGAAGTATCCATTTGGATTTGGTGG AGAAAGGAGATGGGGAGTTTTGGGTGATGAGTTCAATGCAACCTCCACCGTTTCCCTTAAGAGTGACATGTAA
Protein sequence (LotjaGi6g1v0257600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSFTRTQCFSLATLLLLLTTNLHIADAQIGVCYGMMGNNLPSANEVVALYKSNNIRRMRLYDPNQAALQALRDSGIELI LGVPNSDLQSLATNADNARNWVQRNVLNFWPSVRIKYIAVGNEVSPVGGAPTQWMAQYVLPATQNIYQAIRAQGLHDQIK VTTAIDTTLIGNSYPPSQGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDVSLSYALFTSPNIVAQDGQYG YQNLFDAMLDAVHAAIDNTKIGYVEVVVSESGWPSDGGSATSYDNARIYLDNLIRHVGRGTPRRPNKPTETYIFAMFDEN QKSPEYEKHFGLFSANKQKKYPFGFGGERRWGVLGDEFNATSTVSLKSDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| PANTHER | 23 | 343 | 321 | 2.4E-142 | – | |
| PANTHER | 23 | 343 | 321 | 2.4E-142 | – | |
| Gene3D | 29 | 346 | 318 | 6.9E-135 | – | |
| Phobius | 29 | 370 | 342 | - | – | |
| Pfam | 30 | 343 | 314 | 1.2E-116 | ||
| SUPERFAMILY | 30 | 343 | 314 | 1.16E-96 | ||
| ProSitePatterns | 264 | 277 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0257600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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