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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0278800 |
Transcript ID | LotjaGi6g1v0278800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A072UK88|A0A072UK88_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi6g1v0278800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59552303..59554164) extracted from Lotus japonicus Gifu genome v1.2.
CATACCAAAAAAAAAAAGGAGACAGCGTGATCTATAAAATCGTGAATCCAAAGGGGAACGTGAATCCAAATTAGGGTTTC TCTAACCATGAAACCTGGTGAGTTTGATCCCATTCTCCCATGGGAAATTCAGGTAGAAATCTTATCATGGCTTCCGGTGA AAACCCTGATGCAATTCAAGTGCGTTTGCAAATCATGGAAATCACTCATCTCTGATGACAAATCGTTCGAAAAATTGCAC CTGCACAGATCGGCCAGAAACAAGCACGTACTCCTCACCCTACGGGACACTAGCGGTCCTCCCGTCCACTATGAGGAAGA ACAGGACCACTGCCACATTCCGTGCCCCTTGCGTCGTTTGGTCGAGGATCCATCGTCCATTATCGACGAAGAAGACGGGT GGTGCAGTTTGAAGGGTAAATACTTCGTAGCTGGCTCATGTAATGGCTTGGTCTGTTTTCACAACATTCCGTGTTATATT GCTTGTCTCAGTGACACGTTCTGGGTCCGGCTTTGGAACCCGGCCACGCACTTGTGGTCCAACAAGTCACCAACCATTAC CATCTACAATTTCAGAACCGTGAGTTTTGGATTTGGCTATGATCATTCACGTGACACTTACAAGGTGAGTTCAAAATTAT TTTATTTTAATCTGTTATATGAAATATTCATTTTAATCCTATAATAACATGATTTTATGATTTTTATCCTTTTGATTAGT TTTATTATTTATTTCCTCTTTGTAAGGTGGTGGGGATTGCAGAGTCTTCCGGAGAGCATCAATGGGGGGAGACAATGGTT TATTGTATGGGTGATAGCGGTTGGAGAACGATATCGAGCAAACCTGGTTTGGAACTTTCGCTAAAGGGAAACTATGGACA GTTTGCGGGTGGCTGTCTTAATTGGTTAGCAGTTGACGAGTTGAATCAGCCTGATCAACACCTTCCGTATATCGAGCGGA TGGCGTTGGTGATTCTTTCATTTGACATGTGTAAAGAGACATATAGAGCATTGTCATTGCCTAAGGATATTAGTGATGTT AACACAAATCTTAGTGTTTTGGGAAATTGTCTGTGCCTTTTTCAAGACCGTAAAGGAACTCATTTTGATGTGTGGCAAAT GAGAGAGTACGGAGTTCGTGAGTCTTGGACTCGAGTAATGAGTGTCAGCTATGAACATCTTCATGCTGATGATATGCTTC ATCACTTGTGGCCGCTGATTTTCCTAGGTGAAGATGGTGACATCCTATTGCTCTTCAGAAAAAAGAATTGGGATGTTACC ATGTATAATCTGAGAGATAATAGTGTGAAATATGTTCAACTTCCAGACAACAAACATTGGTTGTGTGCCCATGGTTATGT ACAAAGTCTAGTTTCGCCTTATTAAGATTAAGGTTGGGTAAACAACAGAAGCAATAGACCGTGGAAACTGATTAACGCCT TAAATCAAATTGACCTATGGTTGGCAGAAGTGAAATGTCTGAAGGTAAATCATATTTATAGGGAAGCAAATTCTGAAGCA GACAGATTGGCCAAAAGGGGAGCTGAATTTACAAGAGACCTTATCTATTTTAGAGAATCCTTATAAGTGTGCTAGAACCC GTATCTCATGTACTATACTTTATCTGTTTTGCTGGTTTTGTCTGTTGGTTTAGGCTCTTGCTGCTGTTAGCTTTTGGTCC AGCACTCTTTTTCCTCTCTTGGGTTTTTTTCCCACTGGGTTTTCCCTTGAGAGGTTTTAATGAGGCTGGCCATGTAGGGT TTTTATTTACATTTGTAAGCCCTTTATTACCTATCTTGCCCACTATGAGAGGGTTGTTCTCATAGATTCTTCTATTAATA ATAGCTATCTTTTGTTCTCAAA
CDS sequence (LotjaGi6g1v0278800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACCTGGTGAGTTTGATCCCATTCTCCCATGGGAAATTCAGGTAGAAATCTTATCATGGCTTCCGGTGAAAACCCT GATGCAATTCAAGTGCGTTTGCAAATCATGGAAATCACTCATCTCTGATGACAAATCGTTCGAAAAATTGCACCTGCACA GATCGGCCAGAAACAAGCACGTACTCCTCACCCTACGGGACACTAGCGGTCCTCCCGTCCACTATGAGGAAGAACAGGAC CACTGCCACATTCCGTGCCCCTTGCGTCGTTTGGTCGAGGATCCATCGTCCATTATCGACGAAGAAGACGGGTGGTGCAG TTTGAAGGGTAAATACTTCGTAGCTGGCTCATGTAATGGCTTGGTCTGTTTTCACAACATTCCGTGTTATATTGCTTGTC TCAGTGACACGTTCTGGGTCCGGCTTTGGAACCCGGCCACGCACTTGTGGTCCAACAAGTCACCAACCATTACCATCTAC AATTTCAGAACCGTGAGTTTTGGATTTGGCTATGATCATTCACGTGACACTTACAAGGTGGTGGGGATTGCAGAGTCTTC CGGAGAGCATCAATGGGGGGAGACAATGGTTTATTGTATGGGTGATAGCGGTTGGAGAACGATATCGAGCAAACCTGGTT TGGAACTTTCGCTAAAGGGAAACTATGGACAGTTTGCGGGTGGCTGTCTTAATTGGTTAGCAGTTGACGAGTTGAATCAG CCTGATCAACACCTTCCGTATATCGAGCGGATGGCGTTGGTGATTCTTTCATTTGACATGTGTAAAGAGACATATAGAGC ATTGTCATTGCCTAAGGATATTAGTGATGTTAACACAAATCTTAGTGTTTTGGGAAATTGTCTGTGCCTTTTTCAAGACC GTAAAGGAACTCATTTTGATGTGTGGCAAATGAGAGAGTACGGAGTTCGTGAGTCTTGGACTCGAGTAATGAGTGTCAGC TATGAACATCTTCATGCTGATGATATGCTTCATCACTTGTGGCCGCTGATTTTCCTAGGTGAAGATGGTGACATCCTATT GCTCTTCAGAAAAAAGAATTGGGATGTTACCATGTATAATCTGAGAGATAATAGTGTGAAATATGTTCAACTTCCAGACA ACAAACATTGGTTGTGTGCCCATGGTTATGTACAAAGTCTAGTTTCGCCTTATTAA
Protein sequence (LotjaGi6g1v0278800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPGEFDPILPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISDDKSFEKLHLHRSARNKHVLLTLRDTSGPPVHYEEEQD HCHIPCPLRRLVEDPSSIIDEEDGWCSLKGKYFVAGSCNGLVCFHNIPCYIACLSDTFWVRLWNPATHLWSNKSPTITIY NFRTVSFGFGYDHSRDTYKVVGIAESSGEHQWGETMVYCMGDSGWRTISSKPGLELSLKGNYGQFAGGCLNWLAVDELNQ PDQHLPYIERMALVILSFDMCKETYRALSLPKDISDVNTNLSVLGNCLCLFQDRKGTHFDVWQMREYGVRESWTRVMSVS YEHLHADDMLHHLWPLIFLGEDGDILLLFRKKNWDVTMYNLRDNSVKYVQLPDNKHWLCAHGYVQSLVSPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 6 | 146 | 141 | 5.36E-14 | ||
Gene3D | 8 | 46 | 39 | 4.4E-10 | – | |
ProSiteProfiles | 10 | 50 | 41 | 11.193 | ||
SMART | 10 | 50 | 41 | 1.0E-9 | ||
Pfam | 10 | 49 | 40 | 3.5E-9 | ||
PANTHER | 16 | 361 | 346 | 1.1E-41 | – | |
PANTHER | 16 | 361 | 346 | 1.1E-41 | – | |
TIGRFAM | 117 | 364 | 248 | 6.4E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0278800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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