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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0297000 |
| Transcript ID | LotjaGi6g1v0297000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-ketodihydrosphingosine reductase; TAIR: AT3G06060.2 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q0WRJ2|TC10A_ARATH 3-dehydrosphinganine reductase TSC10A; TrEMBL-Plants: tr|A0A1J7H225|A0A1J7H225_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0297000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61453137..61455821) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGACGCATTCTTCTCCTTCTTCGTTCTCCTCCCTCTGCTCCTCCTCGCCGTCCTCTACTTCCTGGTACGACCCCG CCCCGTCAAGATCCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGATCGAGCGGCATCGGCCTCGCACTCGCTCACC GCGCTGCCTCCGAGGGCGCGCGCGTCTCGATCCTGGCGCGGTCGCCGGAGAAGCTGGAGGAGGCGAAGAACGCCGTCCGG CTTGCTACAGGGATCGACGTGGCGGTGTTCGCTGCCGATGTCCGCGACTACGAGGCGGTGAAGAAGGCGGTGGAGGAGGC TGGGCCAATCGATGTGCTGATACTCAACCATGGCGTGTTCACTGCGTTGGAGCTGGAGAAGATGGAGCTGAGTGAGGTGA AGTTCACCATTGATGTGAATTTGATGGGGACGTTGAACATGATCAAAGCTGCGTTGCCTGCAATGAAGGCCAGGAAGGAC CCTTTGCCTGCTTCCATTGCTCTCATGTCCTCACAAGCTGGTCAGGTAGGTACCCTTTTGCTCTCTGTTCTCTTTGTTCA TTGTATGGTGCTAGAGCTAGAAGCTTCTGAGAAAGTTGAAAGGTTTTATAGGGGTTCAGGTTTAATTGTATGACACGATT TGTGTTTTGTGGTTCTCCTGCAATGCTCTTAGTAAAGAGAAATTGGATCAATAAGCTGAAAATTGTTGCAGCAAATTTGG TTTCACTAGTAACTAGTTAAAGTGATTAAGTATATTGACTGGTTACCATGTGTAGTTGTAGTTTTTTGTGCAGGCTTTGA TTCTGAAGTGGACCCTTTTAATTATGACATAGTATTTAATGAACTTTAACCCTTACAAGAATAGTAGGTGGTTTCAGAGG TGCAAATTGCTTGTATTAAAGTCACAAACAATTGTAAAAAAATTGCAGCACCAACAGGTGTGGTTACATTTGATTTTGCA GTCTGGTTGCTAACCAAACTGGAATATTGTGGTTACAATTGCAGTTGAGGAAGGCAATTTAATGCCATTTGAAACATCTA CTTCCTTTGGCAAAAAATTTACTTCACATGTTTTACATTAGTGACAGTCAACACCTTTGGTTTCTTACTAGACCCCAACT GGTGTATGAAATTTTCATTTTATGTATATTATTTATGATATGTACTTATTACTGATACTACTGCACTGGTTAACCAATTA TATTCAAAAAACCTTGGGGATGTTTTGGAACCAAAAAGTGTCCTGCTAAGGGTTATGCTTGTATGGAGGAGAAGGGAAAG TTTCAGGCAAACCTTTCATGGAAGAAAATAATTGAGTTTTATATAATCCTATAAAATCCTAATTTAAGGGAATAAGAGTC ATTACTGAACCCATTGTTTTCTTCCTCTTACTTTTGTTTTCTGCCCTATGCTTCCCTTGACTTAAGCAATGTTATCAGAG CAGGCTGCCTTTTATTATACAGCATTTACATAGATATTTGCTTATCAAAAAAAAAAAAAATTACATTGATATTTTTCTTA CTGTGTTTGAGTATCCAGAGAATGACTCTTCAAGGTTTATATCCTGACGTCTGATTCTGAGATGATCTACAATGTGTTTT TCTGTTTTTTAATTGTCGAATTTGTGTTGGTACGTAGGTGGGAATTTATGGTTATGTAGCTTATTCAGCCAGTAAATTTG GTCTCCTTGGTGTAGCACAGTCATTGCAACATGAGGTTATAGCTGATAATATTCATGTCTCTCTCATATTCCCTCCAGAC ACAGATACTCCTGGATTCGTAGAAGGTATTGAATTGGATGTCTGAACTTGTTTCTTTTCATACACGTTACTTCTGATAAT TTATCCAGCGTAATTTTACATTGGAAATGAGGTAAGCCGCCTTTGTGAAACTAGTTGTTGGTTTAGTTCAAGCTCAATAT GGATGTAGAGACTAGGCCTACAAAATGAAGTGCTTGAATACATCCTTTGAAATTATTTAATTCATAACATGGATTTCTGC ATCAACTACCAGCTTATTTTGTTGTGATTCAACATCTGCTGTGCTCCTATTAAGTCCAGGTTCTTGATTATCAGAACGTC TTTTCTATTCAGTGTGTGATCTAGCTCTCTAAGTTTGAGCATATTGTCATGTGACATGCTATTTGATCTATCTCAATTAG AAATGATAGATAATGAATAGTTATAGCTTAACATAGTTTCATTTCATGCCTACAAAATATCCATTTGAATTTATGCTTTC ATAGGTTTATAAAATGAAATTTGTGCTTTTGGCATGTCAACTTTCTGTTTATATTATCTTTTGGGAAATTATATTTTTCC TGTGATCAAAGTGGAAGTACAAACTGAAAGGCTACTTTTGCAGAAAACAAAAGAAAACCAGAGCTTACCAAAATCATTTC AGCCTCTTCTGGTGCTATGAAAGCTGAGGATGTAGCTCAGAAAGCTTTTGATGGCATAAAATGTGGCAGTTTTATCATTT CTTGTAATTTGGAGGGATTTGCGCTATCCCTAGCAACTGCAGGTTTATCACCTCAGAGATCATTCTTAATGGCATTTCTT GAGGTTGTTGCTGCTGGAATAATACGTATAGTGGCCCTATGTTTCCAGTGGAGTTGGTTTGGAAGTATAGAGAAATGGCA CAGTCAAAAGAAGGGTAAGTACTGCACAATATAATTTGTCTATGA
CDS sequence (LotjaGi6g1v0297000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACGCATTCTTCTCCTTCTTCGTTCTCCTCCCTCTGCTCCTCCTCGCCGTCCTCTACTTCCTGGTACGACCCCG CCCCGTCAAGATCCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGATCGAGCGGCATCGGCCTCGCACTCGCTCACC GCGCTGCCTCCGAGGGCGCGCGCGTCTCGATCCTGGCGCGGTCGCCGGAGAAGCTGGAGGAGGCGAAGAACGCCGTCCGG CTTGCTACAGGGATCGACGTGGCGGTGTTCGCTGCCGATGTCCGCGACTACGAGGCGGTGAAGAAGGCGGTGGAGGAGGC TGGGCCAATCGATGTGCTGATACTCAACCATGGCGTGTTCACTGCGTTGGAGCTGGAGAAGATGGAGCTGAGTGAGGTGA AGTTCACCATTGATGTGAATTTGATGGGGACGTTGAACATGATCAAAGCTGCGTTGCCTGCAATGAAGGCCAGGAAGGAC CCTTTGCCTGCTTCCATTGCTCTCATGTCCTCACAAGCTGGTCAGGTGGGAATTTATGGTTATGTAGCTTATTCAGCCAG TAAATTTGGTCTCCTTGGTGTAGCACAGTCATTGCAACATGAGGTTATAGCTGATAATATTCATGTCTCTCTCATATTCC CTCCAGACACAGATACTCCTGGATTCGTAGAAGAAAACAAAAGAAAACCAGAGCTTACCAAAATCATTTCAGCCTCTTCT GGTGCTATGAAAGCTGAGGATGTAGCTCAGAAAGCTTTTGATGGCATAAAATGTGGCAGTTTTATCATTTCTTGTAATTT GGAGGGATTTGCGCTATCCCTAGCAACTGCAGGTTTATCACCTCAGAGATCATTCTTAATGGCATTTCTTGAGGTTGTTG CTGCTGGAATAATACGTATAGTGGCCCTATGTTTCCAGTGGAGTTGGTTTGGAAGTATAGAGAAATGGCACAGTCAAAAG AAGGGTAAGTACTGCACAATATAA
Protein sequence (LotjaGi6g1v0297000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADAFFSFFVLLPLLLLAVLYFLVRPRPVKIPIKNRHVFITGGSSGIGLALAHRAASEGARVSILARSPEKLEEAKNAVR LATGIDVAVFAADVRDYEAVKKAVEEAGPIDVLILNHGVFTALELEKMELSEVKFTIDVNLMGTLNMIKAALPAMKARKD PLPASIALMSSQAGQVGIYGYVAYSASKFGLLGVAQSLQHEVIADNIHVSLIFPPDTDTPGFVEENKRKPELTKIISASS GAMKAEDVAQKAFDGIKCGSFIISCNLEGFALSLATAGLSPQRSFLMAFLEVVAAGIIRIVALCFQWSWFGSIEKWHSQK KGKYCTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 321 | 321 | 8.5E-158 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 321 | 321 | 8.5E-158 | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| Phobius | 25 | 284 | 260 | - | – | |
| Gene3D | 30 | 274 | 245 | 5.1E-58 | – | |
| SUPERFAMILY | 32 | 260 | 229 | 3.47E-57 | ||
| SMART | 36 | 206 | 171 | 0.003 | – | |
| CDD | 36 | 269 | 234 | 3.02045E-89 | – | |
| PRINTS | 37 | 54 | 18 | 4.0E-13 | ||
| Pfam | 37 | 227 | 191 | 8.5E-45 | ||
| PRINTS | 108 | 119 | 12 | 4.0E-13 | ||
| ProSitePatterns | 171 | 199 | 29 | - | ||
| PRINTS | 184 | 203 | 20 | 4.0E-13 | ||
| Phobius | 285 | 309 | 25 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 310 | 327 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi6g1v0297000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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