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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300400 |
| Transcript ID | LotjaGi6g1v0300400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|B3FWT3|HPM8_HYPSB Reducing polyketide synthase hmp8; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61806703..61809310) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAAGCAGAAGGAAGCATTCATCTACAAATTCATGAGCTTCGCAGGTTAAGCGAGACGAGCAAATGCAGCACAATGTT CGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAACAGAAA CAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAACTCTC GGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATCACCAT CATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTCCATCT CAGATGATGGAATCAAAAGTTTCAGGTCCAGTTCAAGCTTTCTCTTGCAAAGACTCAAGAGCCTTTGCAGACCTATTGCA GTGATCAGGAAGAAAAGAAGTGAAACGGCGGAGGGTGGTGTTGTAACCCCGAGGTATAGGGATAATGCCACATGTTCTAG GACACCGACTCGCACTTGGATTAGCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCA GCAAGATTCTCTATTGGCTTCAGCTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAAT TATGGAGAGGTTGCTAAAGGAGACACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGC AGAAGCTCTGTTGTTCTTAACTGAGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACC AAGAGTGTGAGTTAGGGCCTTCAGGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGA AGCATATTTGATGGGTTGAAGATGGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCT CATTGGGGCGAGAATTCTTCGCCAATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCA TATCTGTGGTGGAGAGACTAGTTGAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAG ATTTTGTCAGCATTAGCCGGCAAGAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATC TCTTCTCCAGACTAACAGGAGTTCTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTT ATGGTTTCTGGACATTCAACCACTTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATT GGAAACACAAGAGGCCTGCTCCCAAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTAC TCCAACCCAGATTCTGACACTGAAGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGC AACTTAGGAAAGAGATTTCAGAGATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCC TTGTTGCAGAAACTAAGCATAGAGATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGG TGGAGTGCTTAAAGAATTGTTCAATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTG GCCAGGCCCTAGCAATGTTGGCATTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTG GTATTTGCATTGAAAGTTCCGCTGCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGA TTCAGAATGCTTCAACCAGCTTAAGAGGGTTACAGCTGCAGCACCCACAGTAAGTGTTACTCTAACCATTCTAATTATGA GCTACCAGCATTTGAGATTTTTATTATGTGTCTATTCTATCCAACAAAATCACACATGAAAGAAAGAAAAGTTTGATCAA TCTTAAACCATTTACCATGCAGGTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGACTTG CAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGAACTA GCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGATAGA GCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTGGAGG GTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCTAACC ATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
CDS sequence (LotjaGi6g1v0300400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAAC AGAAACAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAA CTCTCGGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATC ACCATCATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTC CATCTCAGATGATGGAATCAAAAGTTTCAGGTCCAGTTCAAGCTTTCTCTTGTATAGGGATAATGCCACATGTTCTAGGA CACCGACTCGCACTTGGATTAGCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCAGC AAGATTCTCTATTGGCTTCAGCTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAATTA TGGAGAGGTTGCTAAAGGAGACACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGCAG AAGCTCTGTTGTTCTTAACTGAGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACCAA GAGTGTGAGTTAGGGCCTTCAGGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGAAG CATATTTGATGGGTTGAAGATGGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCTCA TTGGGGCGAGAATTCTTCGCCAATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCATA TCTGTGGTGGAGAGACTAGTTGAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAGAT TTTGTCAGCATTAGCCGGCAAGAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATCTC TTCTCCAGACTAACAGGAGTTCTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTTAT GGTTTCTGGACATTCAACCACTTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATTGG AAACACAAGAGGCCTGCTCCCAAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTACTC CAACCCAGATTCTGACACTGAAGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGCAA CTTAGGAAAGAGATTTCAGAGATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCCTT GTTGCAGAAACTAAGCATAGAGATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGGTG GAGTGCTTAAAGAATTGTTCAATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTGGC CAGGCCCTAGCAATGTTGGCATTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTGGT ATTTGCATTGAAAGTTCCGCTGCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGATT CAGAATGCTTCAACCAGCTTAAGAGGGTTACAGCTGCAGCACCCACAGTACTTCAGGCAATCATGTCAGAAGAAAACAAG CTACAAGAAGTGATGGTTGGACTTGCAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGA TTCTGGAATCACTGAGGCTGAACTAGCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCC CAAGGATAAGGAGATTCGTGATAGAGCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGAT CTGGGAATGGAGGAGGTGCTGGAGGGTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGT GGGATTGAACCGGCACAATCTAACCATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
Protein sequence (LotjaGi6g1v0300400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFEPRGVSIIEKRDSGADNNSLDSPTTETAPEKKLTLFALRLAVLEKAATGLGTLGFIWATVVLLGGFAITLDKTDFWFI TIILLIEGARIFSRSHELEWQHQATWSISDDGIKSFRSSSSFLLYRDNATCSRTPTRTWISSDVPLLPYAKWFFLSRNIS KILYWLQLLSATACVVLSSIKLVIHNYGEVAKGDTDKRNRASALNIFYALALAEALLFLTEKAYWEWKISYCELLDEVNQ ECELGPSGMVSIRRFFYDAYSRCVNGSIFDGLKMDMVCFAMDLLASNSPDEQLIGARILRQFAVSERFSDDTLQKIGISI SVVERLVEMLNWDDHKEEEIRLSAAEILSALAGKKQNSLRIAGIPGAMESISSLLQTNRSSIPAADEIGEKKLILDHPSY GFWTFNHLGLLILKKLAHDHDNCWKIGNTRGLLPKIIEFTHAEERLLKNENVTPTQILTLKRSLQLVKMLASTTGANGKQ LRKEISEIVFTISNIRDILRHGEKHPLLQKLSIEILTSLALEDEATERIGGTGGVLKELFNIFFRQSIPESQKDVTAVAG QALAMLALESKSNCHRILKLKVVERLVFALKVPLLRVNAARILRNLCIYSGSDSECFNQLKRVTAAAPTVLQAIMSEENK LQEVMVGLAANVFTFMTSSESRRVFEDSGITEAELANKLVQILKKHKYPPTKVPRIRRFVIELAIWMMKDEAENIQTFTD LGMEEVLEGVLETTSELESFNVFSGTVGLNRHNLTIHSLVETALKLLEDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 13 | 769 | 757 | 0.0 | – | |
| PANTHER | 13 | 769 | 757 | 0.0 | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 48 | 71 | 24 | - | – | |
| Phobius | 72 | 76 | 5 | - | – | |
| Phobius | 77 | 93 | 17 | - | – | |
| Phobius | 94 | 161 | 68 | - | – | |
| Phobius | 162 | 183 | 22 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 184 | 202 | 19 | - | – | |
| TMHMM | 201 | 220 | 20 | - | – | |
| Phobius | 203 | 220 | 18 | - | – | |
| Phobius | 221 | 770 | 550 | - | – | |
| SUPERFAMILY | 281 | 734 | 454 | 1.15E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0300400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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