Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0300400 |
Transcript ID | LotjaGi6g1v0300400.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ARM repeat superfamily protein; TAIR: AT5G18980.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5W041|ARMC3_HUMAN Armadillo repeat-containing protein 3; TrEMBL-Plants: tr|I1M166|I1M166_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61806703..61809310) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAAGCAGAAGGAAGCATTCATCTACAAATTCATGAGCTTCGCAGGTTAAGCGAGACGAGCAAATGCAGCACAATGTT CGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAACAGAAA CAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAACTCTC GGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATCACCAT CATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTCCATCT CAGATGATGGAATCAAAAGTTTCAGGTCCAGTTCAAGCTTTCTCTTGCAAAGACTCAAGAGCCTTTGCAGACCTATTGCA GTGATCAGGAAGAAAAGAAGTGAAACGGCGGAGGGTGGTGTTGTAACCCCGAGGTATAGGGATAATGCCACATGTTCTAG GACACCGACTCGCACTTGGATTAGCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCA GCAAGATTCTCTATTGGCTTCAGCTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAAT TATGGAGAGGTTGCTAAAGGAGACACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGC AGAAGCTCTGTTGTTCTTAACTGAGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACC AAGAGTGTGAGTTAGGGCCTTCAGGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGA AGCATATTTGATGGGTTGAAGATGGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCT CATTGGGGCGAGAATTCTTCGCCAATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCA TATCTGTGGTGGAGAGACTAGTTGAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAG ATTTTGTCAGCATTAGCCGGCAAGAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATC TCTTCTCCAGACTAACAGGAGTTCTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTT ATGGTTTCTGGACATTCAACCACTTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATT GGAAACACAAGAGGCCTGCTCCCAAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTAC TCCAACCCAGATTCTGACACTGAAGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGC AACTTAGGAAAGAGATTTCAGAGATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCC TTGTTGCAGAAACTAAGCATAGAGATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGG TGGAGTGCTTAAAGAATTGTTCAATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTG GCCAGGCCCTAGCAATGTTGGCATTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTG GTATTTGCATTGAAAGTTCCGCTGCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGA TTCAGAATGCTTCAACCAGCTTAAGAGGGTTACAGCTGCAGCACCCACAGTAAGTGTTACTCTAACCATTCTAATTATGA GCTACCAGCATTTGAGATTTTTATTATGTGTCTATTCTATCCAACAAAATCACACATGAAAGAAAGAAAAGTTTGATCAA TCTTAAACCATTTACCATGCAGGTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGACTTG CAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGAACTA GCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGATAGA GCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTGGAGG GTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCTAACC ATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
CDS sequence (LotjaGi6g1v0300400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGAGCCTCGAGGGGTTAGCATCATTGAAAAGAGAGACAGTGGTGCTGATAACAACTCTCTTGATTCACCAACAAC AGAAACAGCACCAGAAAAGAAGCTAACCTTGTTTGCCCTGAGGCTAGCAGTGCTTGAAAAAGCAGCAACAGGGTTAGGAA CTCTCGGTTTCATATGGGCAACCGTTGTCCTTCTTGGCGGCTTTGCCATCACCTTAGACAAAACCGATTTCTGGTTCATC ACCATCATACTCTTGATTGAAGGAGCCAGAATCTTCAGCAGGAGCCATGAACTTGAGTGGCAGCACCAAGCCACATGGTC CATCTCAGATGATGGAATCAAAAGTTTCAGGTATAGGGATAATGCCACATGTTCTAGGACACCGACTCGCACTTGGATTA GCTCAGATGTTCCACTTCTACCTTATGCTAAATGGTTTTTCCTTTCAAGGAATATCAGCAAGATTCTCTATTGGCTTCAG CTTCTTTCTGCAACAGCTTGTGTGGTTCTTTCATCAATTAAGCTTGTGATACACAATTATGGAGAGGTTGCTAAAGGAGA CACTGACAAGAGGAATAGAGCATCTGCTCTGAACATCTTTTATGCTCTGGCACTAGCAGAAGCTCTGTTGTTCTTAACTG AGAAGGCTTACTGGGAGTGGAAAATCAGCTACTGTGAGCTCTTGGATGAGGTTAACCAAGAGTGTGAGTTAGGGCCTTCA GGGATGGTTTCCATCAGAAGATTCTTTTATGATGCTTATTCAAGGTGTGTCAATGGAAGCATATTTGATGGGTTGAAGAT GGACATGGTCTGTTTCGCCATGGATCTCTTGGCTTCAAATTCACCTGATGAACAGCTCATTGGGGCGAGAATTCTTCGCC AATTCGCGGTCAGTGAGCGGTTTTCTGATGACACGCTTCAGAAGATTGGAATTTCCATATCTGTGGTGGAGAGACTAGTT GAGATGTTGAATTGGGATGATCACAAGGAGGAGGAAATTAGGCTATCAGCTGCGGAGATTTTGTCAGCATTAGCCGGCAA GAAGCAGAACTCGCTCCGCATAGCCGGGATACCAGGAGCTATGGAGTCAATTTCATCTCTTCTCCAGACTAACAGGAGTT CTATACCTGCAGCTGATGAAATTGGAGAAAAGAAACTCATTTTAGATCACCCCAGTTATGGTTTCTGGACATTCAACCAC TTGGGACTCCTCATTTTGAAAAAACTTGCACATGATCATGACAACTGTTGGAAGATTGGAAACACAAGAGGCCTGCTCCC AAAGATCATTGAATTCACTCATGCTGAAGAAAGGTTGCTGAAGAATGAAAATGTTACTCCAACCCAGATTCTGACACTGA AGAGATCTCTGCAGCTGGTGAAGATGCTGGCTAGCACAACAGGCGCTAATGGGAAGCAACTTAGGAAAGAGATTTCAGAG ATAGTCTTCACAATCAGCAATATCAGAGACATTTTAAGGCATGGAGAGAAACACCCCTTGTTGCAGAAACTAAGCATAGA GATTTTAACCAGTCTCGCATTGGAAGATGAAGCGACGGAAAGGATTGGAGGTACAGGTGGAGTGCTTAAAGAATTGTTCA ATATATTTTTCAGACAAAGCATACCTGAAAGTCAGAAAGATGTAACAGCTGTTGCTGGCCAGGCCCTAGCAATGTTGGCA TTAGAAAGTAAGAGCAATTGTCATCGGATTCTGAAGTTGAAAGTAGTGGAGAGGCTGGTATTTGCATTGAAAGTTCCGCT GCTTCGCGTCAATGCTGCTAGGATTCTAAGAAACTTGTGCATCTACAGTGGATCAGATTCAGAATGCTTCAACCAGCTTA AGAGGGTTACAGCTGCAGCACCCACAGTACTTCAGGCAATCATGTCAGAAGAAAACAAGCTACAAGAAGTGATGGTTGGA CTTGCAGCAAATGTTTTCACATTCATGACTTCTTCTGAATCAAGGAGAGTGTTTGAAGATTCTGGAATCACTGAGGCTGA ACTAGCAAATAAATTAGTCCAGATTCTGAAGAAACACAAGTATCCACCCACAAAGGTCCCAAGGATAAGGAGATTCGTGA TAGAGCTGGCGATTTGGATGATGAAAGACGAAGCAGAAAATATACAAACTTTCACGGATCTGGGAATGGAGGAGGTGCTG GAGGGTGTCCTAGAGACCACATCAGAGCTTGAAAGCTTTAATGTTTTCTCTGGTACTGTGGGATTGAACCGGCACAATCT AACCATTCACTCACTGGTTGAGACAGCATTGAAGTTGTTGGAAGATTGGTAA
Protein sequence (LotjaGi6g1v0300400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFEPRGVSIIEKRDSGADNNSLDSPTTETAPEKKLTLFALRLAVLEKAATGLGTLGFIWATVVLLGGFAITLDKTDFWFI TIILLIEGARIFSRSHELEWQHQATWSISDDGIKSFRYRDNATCSRTPTRTWISSDVPLLPYAKWFFLSRNISKILYWLQ LLSATACVVLSSIKLVIHNYGEVAKGDTDKRNRASALNIFYALALAEALLFLTEKAYWEWKISYCELLDEVNQECELGPS GMVSIRRFFYDAYSRCVNGSIFDGLKMDMVCFAMDLLASNSPDEQLIGARILRQFAVSERFSDDTLQKIGISISVVERLV EMLNWDDHKEEEIRLSAAEILSALAGKKQNSLRIAGIPGAMESISSLLQTNRSSIPAADEIGEKKLILDHPSYGFWTFNH LGLLILKKLAHDHDNCWKIGNTRGLLPKIIEFTHAEERLLKNENVTPTQILTLKRSLQLVKMLASTTGANGKQLRKEISE IVFTISNIRDILRHGEKHPLLQKLSIEILTSLALEDEATERIGGTGGVLKELFNIFFRQSIPESQKDVTAVAGQALAMLA LESKSNCHRILKLKVVERLVFALKVPLLRVNAARILRNLCIYSGSDSECFNQLKRVTAAAPTVLQAIMSEENKLQEVMVG LAANVFTFMTSSESRRVFEDSGITEAELANKLVQILKKHKYPPTKVPRIRRFVIELAIWMMKDEAENIQTFTDLGMEEVL EGVLETTSELESFNVFSGTVGLNRHNLTIHSLVETALKLLEDW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 47 | 47 | - | – | |
PANTHER | 13 | 762 | 750 | 0.0 | – | |
PANTHER | 13 | 762 | 750 | 0.0 | – | |
TMHMM | 48 | 70 | 23 | - | – | |
Phobius | 48 | 71 | 24 | - | – | |
Phobius | 72 | 76 | 5 | - | – | |
Phobius | 77 | 93 | 17 | - | – | |
Phobius | 94 | 154 | 61 | - | – | |
Phobius | 155 | 176 | 22 | - | – | |
TMHMM | 155 | 177 | 23 | - | – | |
Phobius | 177 | 195 | 19 | - | – | |
TMHMM | 194 | 213 | 20 | - | – | |
Phobius | 196 | 213 | 18 | - | – | |
Phobius | 214 | 763 | 550 | - | – | |
Gene3D | 266 | 531 | 266 | 3.3E-11 | ||
SUPERFAMILY | 274 | 727 | 454 | 1.05E-29 | ||
Gene3D | 532 | 732 | 201 | 3.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0300400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…