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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0300800 |
| Transcript ID | LotjaGi6g1v0300800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Energy-coupling factor transporter transmembrane protein EcfT; TAIR: AT3G21580.1 cobalt ion transmembrane transporter; Swiss-Prot: sp|Q944H2|AB12I_ARATH Protein ABCI12, chloroplastic; TrEMBL-Plants: tr|A0A0L9VEL7|A0A0L9VEL7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0300800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:61833136..61837767) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTGTAACCCTGCCACCTTCCTTCTGGTCTCTTTACCACCACCCAGCTGTGTGCTTTTCCCAAAACCCCCTTCTGC ATTCCCTGGGTTAAGGAAACCCCTTTTGGCCGCAAACGTGAGGAGAAAACGGTGTTTTACAATCAGAGCTTCAAAGGGTC AATCGGTGGATTGGTCCCAGTGGCTCCCCACCGGCTCTTTTGCTGCTGACAAAGTTTTCAGATTGATAGCCGGTGCCACC GCTAGCCCCATTGGCCAGTTTGTATCTTCCCCCACCACGTTTCTTCACTCTATCGACCCTCGAGTCAAATTGGTAAGCAA AATCATTTCATGGGTATTTTGTTTTCTGTTAGTTTCTGCTCAAATTGATCTGAAAGTGTGTGCTTTTGGCCCCGTTTAGG AAAACAGCTTAATTAAGCGCTTATGATCGCCATAAGCGCTTATTCATAAACTATTTTTATAAATTTATTGAAATACATTG AAAATAAGCTATATATAAGCATAAGCTCTTTTTCATAAGCTATAGCTTATGAAAATAAGCTAAAAACAGCTTATGGTAGG CCATAAGTTGTTTGCATAACCTCTCCCAAACACTTACCCAAGCGCTTATGCTATCCGATAAGCTCAAATAAGCTCTTTCA AACGGGTATCTATGCTCTGCTCGAAGTTTTGGCTATTAGAAAGGATTGTGTAGGAGTAGGACTGTAGTGTTTGAGTTTTG GGTTTGTAATATTTTTGTATGATTACAAGAAACTGAAAAATAATGACTTTATGTTCTGATATGTGATATTCACTATTATG CTATGTTTGGATACCTGTTGGCACCGGTGCGTAATCGTTAGCACCTACTTCGAGACAACAAGTGAACGAAACTTTTCTTA TAGATTGAGATATAGTACTCTCGTTGCATTCAACTGATATTCAAACATTAATACTAAGCAATCACAAATGAAAAACTAAT GATTTTGTGATGACTATCATATCTTCTGGATTGAACAAGGCGCGGGGGGGGGGGGGGGATTTAACTGATATCCAAACATT AGTACTAAGCAATCCCAAATTAAAAACTTATGATCTTGTGATGACTGCCATATCTTCTGGATTGAACAAGGTTGTGGGAG GGGGGGAGCAGAGCAGAAAGTGTTATTTTCACATGTTATAAATGTTACATCTGTTCAGGAACCTAATGCTCTGGTAGGCT ACTGCTGATTGCCTCTTTGATGTCTTTCCTATTTTTAAGAGTCATTGATAAAGGGTGATGCAACAACTAAACTGTAATTG AAACATGAATGGAATTCTCAGGCGAGTCAATTTCTATAATCATCTAATGGATTGGAAAAAGCGTCGTTACCATTTGACTG ATAGTGAAGTGGTCATTTATTATTGTTACGTTGTCAATTACTTTGGGTTAGGGGCTCAAGGCTATTAGTGTTGGAGTTCT TCTTATCATGAAACATGATGGAAATCTCAGCAACTATTAGCAGATTCGTATAGCTGGTAGATTAAATTATTTGTTTTGGT TGCTTGGTTTATGTGTGTTTGTGATTTTTGGTGTCTGATTTTACAGGTATGGCTTTTAGTTCTGGTTGTTCTACCGTCAA GGTCACATATAATTATGCGATTTGGATTAGTTATATACTTGACTTTGCTTTCAATTTGGGTTCTACCAAGAAGTACTTGG ACGGTAAGTAATTGTTAACTTGACTTATCTAGTTTGGGGGTAGAGTATCTTCATATATAGATTGATATTGTTCACTTTGC TTAATTATATTTGGTAAGTTGATAACCAATTTAAGGGGTTGATTGTGATTTACATTTACTAGTCCTAGACTATTAGGGTG TTGTCAGATGTATACTTTAAGGTTACATTGTGTTTCATCTGACGTTCACTATTTTTTAATCATGTTTTGAATTATTTTTT TCTTTTCATATCCTTAATTTTCATAGTCCAGCACATGGTATTTCTCATTGTTAATGCTTATTTATGATTTGAGCTAGCTT GTAACTTCTCATAAATAATTTGGATTTTCCTTTATATCAAGTCCAATGACAGTTGGCTATTTATTTACGGTTTCTTTAGC CTTGAAGTTTTGTGTTAATGTGGGAATTTTTTGTCTAACTTCTTTTGTAGGATCAACTAGGACGAGTTTATTTGCTATCA GGATTGCTATTCATAACCTCAGGGCTAGGTGCAGATGGTGCACCTGCACTTGTTCAGTTGAGAACTCCACCACCTGCAGT GACGGGGCTTCCTAATCTTCCTGTATCATTAACAGGTTATTCATATTTAATCTCGAAGTTAGGTCCATTAACCTTTACAA GGAAAGGTTTATCTGTAGCAAGTACTGTTGCATGTTTGACTTTTACAGTAAGTTGCTTTTTTGCCTTTCTGTTTTTTCTT TTCATCTATAAGTTGATTTTGGACATTTGGCAAAAACTATGCCTTGAAAGCTTTCTGAAACAGCAAAAATAATTTATGAT TCCGTCTTCTGAGAATTTGATCTGCATTTCTTTACAAGGTATTTCAAAGTGCTAGTCTCTGCCTTACAACTACTACCCCT GAACAACTAGCCTTTGCATTACGATGGTTTATGCTCCCTCTGAGATATCTGGGTGTCTCTGTGTCAGAAATTGTGCTTTC CCTTTTACTTTCGTTGAGGTTCATCAGTCTAGTTTTTGACGAGGTAAGAGGTAGGGTAGGGGTTTAACATGCCTACAAAT ATGTGAATTTCATAAACATAGTTTTGATCTCTGTTTGTTCTATTTTGTTCATGTGTTTCCTTCCAGTAAAACTATCACAC ATAAAATGTGAAATTAAGAATTGGTGTACACTTTTTTTTGTGGGGGGGGGGGGGGGGGGTGGGATCTTGAAAACAAGCTG AATCACTGTGTTTTTTTTTTCTTTCGTTTTTTGTTTGGGGAGGAGGAGGGGGATGCTTATGATTCCAACTCGAAACACAA GCGTTACTAGGTTTATTTGTTAATAGGACGGTGGTGTTCATTTAAGAACTTAAGGATATAAGATGGCTGTAAGCAGTTCT GTAGATGATCTTACCGGTTTTAATATTTTGAGGTACACTAAAACCAGGATATGATAATATTTTGATTAATAGAATTTTCA TTTGTTATGGATGATAGGATTAGATTTAGCACAGGAAATAATTGAAGTAAGATTTCTGAAAACACAGATGAGCAGGTTAG CCTAGGTACTACTTGAAATGGAATGCATAATTAGATGATAATAGTAAATATCACAGTCGCTAAAATTTATTAGTAGTGTA TACAGAAAAATTGGAAATCCCTGGAGCAACTTCAAGCAATAGTTAAAACACTGTTTTTACGTTGAGTATTAAACTGGAGT TTTTCTTGTTCCTTGCTATGCTCATTAAATATCCATTTTGTGTTAGTGCAGGTGCGTAACCTTGCTATGGGAATCGTATC TCGCAGGGTAAATTGGAAACAATTGACTGTTATGGAGACAATTGATAGTAAGTAAATTTTTGCTAGCTGTTCCTCATGGT TCCAGGCCTTGAAAAAAATTATTTTTGTGTTTTCTAATTACTAACTAGTGTCCCAACTAGTTAATGGGTATCATCTGGAT AATGATTTTACTTTAACCTCATTTAGATCTCTAGGCTTCATATTTGTGCCATCCATAAGAAATTGACACTAGGAAGTAGG AAGTGCTTATCCTAACATGTTTGTTTTGTGTATTTCCATGCTAAGGTCAATGAAATAGGTAATAAATACCATACGACATG CCTATTGATGATGCAGCATTTACTTCTATTCCAATAGCACTTACACATGATTTTGTATAAATATATTTTTGTTGCATAAC CTTATACTTATTTAGTTTTATATTACATTTGTCCCATTATTTTGTTATATTAATATGATCATCATTGCACTGAAACTGAA TTTCTGGACTGGTGCACAACTTGCTATTTTACCTTATATGACATGTCAGTATTATAATCAAGGCCAGCCCGGATCCTGAA CAAAATAACTGAGGGTGCAAGTTTATCTGTTTCTTTTGGATGGTGGTAATTGCTGTCGAAGCTATTTTTTGAAATTTAGT GCTGTTTGCTGCTATCCAGCTGAACTTTCTATCCGTCACCTATATCTACTAGTACTACTAACAGATACATGTACCTCTGT CTAAATAACCTTGTTCTAGCATACGGTTTCAACTGAATGTTACATGGCAGGTAGTTTGTACTTTGTATAGGAAACTTAGT TCTGGAACCGAAAAACTTAATCCGGTTAAAGAAGTTTGATAGACTAAAAGCTTTTACGTAACTATATTTCTCTTTTATCA CGATTTATATATCCGTATATAACTTTGCAGTTTTCTTCAACTACTTTCGGCGCATCTTCAAAAATATTTTCAGCCATGCA GAGCAAATTTCTCAGGTTTGTCTTAGATGTCTAATATATTTTTCCCCTATTGTGTATTACTTTTGTTTGGCTTTTCATAT TTGTTCATTGTTGAACTGTTGATCAACTGGAAAATTTTGTCAACAATTAAGAAGGTTTTTCAGATAGCTTTAGACAAAAT GCTGCTTTCAGTTTTGGCATATGAAAAGTAATACGAAACAGTTACAATTTTGTCCATGTGTTAATTGTATAG
CDS sequence (LotjaGi6g1v0300800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTGTAACCCTGCCACCTTCCTTCTGGTCTCTTTACCACCACCCAGCTGTGTGCTTTTCCCAAAACCCCCTTCTGC ATTCCCTGGGTTAAGGAAACCCCTTTTGGCCGCAAACGTGAGGAGAAAACGGTGTTTTACAATCAGAGCTTCAAAGGGTC AATCGGTGGATTGGTCCCAGTGGCTCCCCACCGGCTCTTTTGCTGCTGACAAAGTTTTCAGATTGATAGCCGGTGCCACC GCTAGCCCCATTGGCCAGTTTGTATCTTCCCCCACCACGTTTCTTCACTCTATCGACCCTCGAGTCAAATTGGTATGGCT TTTAGTTCTGGTTGTTCTACCGTCAAGGTCACATATAATTATGCGATTTGGATTAGTTATATACTTGACTTTGCTTTCAA TTTGGGTTCTACCAAGAAGTACTTGGACGGATCAACTAGGACGAGTTTATTTGCTATCAGGATTGCTATTCATAACCTCA GGGCTAGGTGCAGATGGTGCACCTGCACTTGTTCAGTTGAGAACTCCACCACCTGCAGTGACGGGGCTTCCTAATCTTCC TGTATCATTAACAGGTTATTCATATTTAATCTCGAAGTTAGGTCCATTAACCTTTACAAGGAAAGGTTTATCTGTAGCAA GTACTGTTGCATGTTTGACTTTTACAGTATTTCAAAGTGCTAGTCTCTGCCTTACAACTACTACCCCTGAACAACTAGCC TTTGCATTACGATGGTTTATGCTCCCTCTGAGATATCTGGGTGTCTCTGTGTCAGAAATTGTGCTTTCCCTTTTACTTTC GTTGAGGTTCATCAGTCTAGTTTTTGACGAGGTGCGTAACCTTGCTATGGGAATCGTATCTCGCAGGGTAAATTGGAAAC AATTGACTGTTATGGAGACAATTGATATTTTCTTCAACTACTTTCGGCGCATCTTCAAAAATATTTTCAGCCATGCAGAG CAAATTTCTCAGGGTTTTTCAGATAGCTTTAGACAAAATGCTGCTTTCAGTTTTGGCATATGA
Protein sequence (LotjaGi6g1v0300800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCNPATFLLVSLPPPSCVLFPKPPSAFPGLRKPLLAANVRRKRCFTIRASKGQSVDWSQWLPTGSFAADKVFRLIAGAT ASPIGQFVSSPTTFLHSIDPRVKLVWLLVLVVLPSRSHIIMRFGLVIYLTLLSIWVLPRSTWTDQLGRVYLLSGLLFITS GLGADGAPALVQLRTPPPAVTGLPNLPVSLTGYSYLISKLGPLTFTRKGLSVASTVACLTFTVFQSASLCLTTTTPEQLA FALRWFMLPLRYLGVSVSEIVLSLLLSLRFISLVFDEVRNLAMGIVSRRVNWKQLTVMETIDIFFNYFRRIFKNIFSHAE QISQGFSDSFRQNAAFSFGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| Phobius | 14 | 20 | 7 | - | – | |
| Phobius | 21 | 118 | 98 | - | – | |
| PANTHER | 38 | 325 | 288 | 1.1E-160 | – | |
| PANTHER | 38 | 325 | 288 | 1.1E-160 | – | |
| Pfam | 92 | 322 | 231 | 5.9E-17 | ||
| TMHMM | 118 | 137 | 20 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| Phobius | 138 | 148 | 11 | - | – | |
| Phobius | 149 | 171 | 23 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 172 | 176 | 5 | - | – | |
| Phobius | 177 | 197 | 21 | - | – | |
| Phobius | 198 | 208 | 11 | - | – | |
| Phobius | 209 | 229 | 21 | - | – | |
| TMHMM | 209 | 231 | 23 | - | – | |
| Phobius | 230 | 248 | 19 | - | – | |
| Phobius | 249 | 271 | 23 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 272 | 340 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0300800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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