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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0303200 |
| Transcript ID | LotjaGi6g1v0303200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G68170.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4HVM3|WTR10_ARATH WAT1-related protein At1g68170; TrEMBL-Plants: tr|G7IL80|G7IL80_MEDTR WAT1-related protein; Found in the gene: LotjaGi6g1v0303200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62071012..62073722) extracted from Lotus japonicus Gifu genome v1.2.
GACTTATTATATTTCAGTTTCTCTATCTCTCATTCACTATCAGCTTATCACACACACTTGTCTTCTTCAGTGAAATTTAA GCCCGTATTCAGAGTGCACTGACTAAAGATGAAAGACAATATTGGCAATGTGGTGCAGGGGTTGAAACCAACGTTGCTAA TGGTGGCTGTGCAGATAGCATTTGCAGGGGTGAATGTGCTCTACAAGCTCGCCTTAAACGATGGCATGAACTTGAGGGTG GTTAGTGCCTACCGCTTTGTATTCGCCACTGCTTTCATGGCTCCACTTGCTCTTATCCTTGAAAGGTTAGTTCCTTCTTC AATTTATAAAAAAATTATTGATCCAACTGATCCATATATATGCTTTTATTTTGTCCATGGATGTTTGTAGAAAGAACAGG ACAAAGATGACTTGGATGGTGCTGTTTCAGTCTTTTCTGTGCGGTGTATTTGGGTAGGTATGTAGTGTCATACTCCCTCC GTTCCTAAATATAAGACCTAATACAAAAAATTGCGCTTATTAAGAAAACATTAAATGTGTTCAATTAGTGTATTGGTTTT TTAAAAATGCATACATTCCTCCATATTTACCCTTTGTCATTTTCTCTCACTAATTAATGATAAGTGGTAATCAAAACTTG GGAATTGAAAACATATAATTAATGTGGAGGGTAAAAATGGAAGAGTACAAAACCTTTTGTTAGATTATTGTAACTAGGTC TTATATTTAGGAACTTCAAAATTTTGAAACTAGGTCTTATATTTAGGAACGGAGGGAGTAATGTTTATTGATATGTTCCT TTATTATATACCACTTAATTGATACTCCTTTCAATTTATTATGGACTAATTTATTAGCACAAGTTGGTACTTGCATGAAT TTCTTTCACGTATCCTGATATTCATTTCATTGATTTGATTATGCAGAGGAGCATTGTCTCAAATTTTGTACTTAGAGTCC CTGGCTTTAACTTCAGTGACATTTGCATCTGCCATGTCCAACCTTACACCAGCCATAACCTTTATCATTGCCGCTTCCTT CGGGTAATTAATTAAAGTAATTAACCATTGATTTTACTTCATTCATATTAAAGAATCGAATTTAATTTCCTTATTCAACA GATTGGAAAAAATAAATTTGAAAACAGTAGCAGGGAAGGCTAAGATAGTAGGTACAATAACTGGAATTGGTGGAGCAATG GTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTTGGTCCTTCCATCACATACACCTTTTGCATCACCAAAATGGTGC TCACCAACACGCTACAAGCACTGGTAAGAACCTTTTGGGTGCTCTCTGTGCACTAGCCAGCAGCATCTCTTACGCATTGT GGCTTACTATTCAGGTCAGTTCAGTTTGCAGGTTCAGCAACTAATTAATCTTTTGTTTAGTGTTAACTGTTAATCCTTTT ATGTTCTGCAATGTTTGGTTTTAAATTAATCTTGAACTGTTGTGTCTCAGAAAAAAATGACTGAAAGTTACCAGAGTTAT TACACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTGCATTGAGAGGGATTTGAG TCAGTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGTATGTTATTTGATCGCTTAATAATTATTTT AAGATAATGCTAACTTTAAGCTATCATCAATAATTATATATGAATTGACTGGCATAGGGTACAGTGGTTTCTGGACTGGT GGTGGTTGTAATTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGCCTCTGGTTCTTGTGATTT TGGCCTTTCTTTGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGGTACGTATCTCAGGCTTTACTTGTCATTCTC AAAACACACATCTCAACACATTAACTAAGAAATAAGATTTTGTCACATTCTTTTCAAAAACGATTTGTCACATTGACAGA GAGTTAATTCAACAGAAATCCTCATGTATCATGTTTTGTGCTGTTTTATAGCTTATAAATTGTTCACCTATAGTGTGATT TTTAGCCATATATGTTAAAAATGGTTAGCTAATTAAACTATAATTGATTGGTTTTGCTAATTTCAGCATCATTGGAGCAG TGTTGATTGTATGTGGCTTATATGCTGTTATATGGGGTAAAAGCAAAGAGATGAAGATGAGTCCTTTGGTGTCTTCAAAT GAATCCGATACAGTCGAAATAGTCTCGAAATCTACAGTATCAGAATCAGAAGAGAAAAGCAACAAAAATGGCATCAAATG ATTAGGCAATGAATATACCAAAGGCTGATTGAGCAAGAGTTAAAGCACATAATATTGGAAGTGGCAAAGTGAGTGGGAGT TGATATTATATGCCCCATAATACATTTCTTAGTTTTTAATTTCACTTTTTCTAGAAGTTGCTTGCTGTGGTGCCTCCTCC CAAATGTAGATATGGTGCCGCCGCTTAGTTGGACCAGTAGAAAAGTACTATGTTTTATATGAGTCAGCAAGTATATTTTT CCTATGATTTTTTTTTATAATATTATTTTTGAAAATATAGTTATTATTTTTTGCTAATTGGTCCCTTCACCTAAATATAA GAGTTTAACCTTGGTAACTGTTAAAGTTAGTGTCCATCAACGTCAAAAAAAAAGTTTTCCATCCATCTTCT
CDS sequence (LotjaGi6g1v0303200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTTGTAGAAAGAACAGGACAAAGATGACTTGGATGGTGCTGTTTCAGTCTTTTCTGTGCGGTGTATTTGGAGG AGCATTGTCTCAAATTTTGTACTTAGAGTCCCTGGCTTTAACTTCAGTGACATTTGCATCTGCCATGTCCAACCTTACAC CAGCCATAACCTTTATCATTGCCGCTTCCTTCGGATTGGAAAAAATAAATTTGAAAACAGTAGCAGGGAAGGCTAAGATA GTAGGTACAATAACTGGAATTGGTGGAGCAATGGTACTGACTCTGGTTAAAGGCATGGAAATTAAAATTTGGTCCTTCCA TCACATACACCTTTTGCATCACCAAAATGGTGCTCACCAACACGCTACAAGCACTGGTAAGAACCTTTTGGGTGCTCTCT GTGCACTAGCCAGCAGCATCTCTTACGCATTGTGGCTTACTATTCAGAAAAAAATGACTGAAAGTTACCAGAGTTATTAC ACAAGCACCGCATTGTTGTCATTTTGGGCATCAGTACTATCCGTCCTGTTTGCTCTTTGCATTGAGAGGGATTTGAGTCA GTGGAGGCTGGGTTGGAATGTTAGATTACTAACTGTTGCTTATGCGGGTACAGTGGTTTCTGGACTGGTGGTGGTTGTAA TTTCATGGTGTATCCAAATGAGAGGTCCTTTGTTTGCCTCTGTTTTCATGCCTCTGGTTCTTGTGATTTTGGCCTTTCTT TGTTCTCCGCTATTGAACGAAACCCTATACCTTGGAAGCATCATTGGAGCAGTGTTGATTGTATGTGGCTTATATGCTGT TATATGGGGTAAAAGCAAAGAGATGAAGATGAGTCCTTTGGTGTCTTCAAATGAATCCGATACAGTCGAAATAGTCTCGA AATCTACAGTATCAGAATCAGAAGAGAAAAGCAACAAAAATGGCATCAAATGA
Protein sequence (LotjaGi6g1v0303200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVCRKNRTKMTWMVLFQSFLCGVFGGALSQILYLESLALTSVTFASAMSNLTPAITFIIAASFGLEKINLKTVAGKAKI VGTITGIGGAMVLTLVKGMEIKIWSFHHIHLLHHQNGAHQHATSTGKNLLGALCALASSISYALWLTIQKKMTESYQSYY TSTALLSFWASVLSVLFALCIERDLSQWRLGWNVRLLTVAYAGTVVSGLVVVVISWCIQMRGPLFASVFMPLVLVILAFL CSPLLNETLYLGSIIGAVLIVCGLYAVIWGKSKEMKMSPLVSSNESDTVEIVSKSTVSESEEKSNKNGIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 4 | 300 | 297 | 1.4E-145 | – | |
| PANTHER | 4 | 300 | 297 | 1.4E-145 | ||
| Pfam | 11 | 82 | 72 | 6.7E-9 | ||
| SUPERFAMILY | 12 | 84 | 73 | 4.45E-8 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 15 | 25 | 11 | - | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Phobius | 31 | 45 | 15 | - | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Phobius | 46 | 66 | 21 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| Phobius | 97 | 128 | 32 | - | – | |
| TMHMM | 129 | 146 | 18 | - | – | |
| Phobius | 129 | 147 | 19 | - | – | |
| Pfam | 130 | 268 | 139 | 3.9E-11 | ||
| Phobius | 148 | 158 | 11 | - | – | |
| Phobius | 159 | 179 | 21 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| SUPERFAMILY | 172 | 273 | 102 | 1.7E-7 | – | |
| Phobius | 180 | 198 | 19 | - | – | |
| TMHMM | 196 | 218 | 23 | - | – | |
| Phobius | 199 | 218 | 20 | - | – | |
| Phobius | 219 | 224 | 6 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 225 | 245 | 21 | - | – | |
| Phobius | 246 | 250 | 5 | - | – | |
| TMHMM | 249 | 268 | 20 | - | – | |
| Phobius | 251 | 270 | 20 | - | – | |
| Phobius | 271 | 310 | 40 | - | – | |
| MobiDBLite | 283 | 310 | 28 | - | – | |
| MobiDBLite | 296 | 310 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0303200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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