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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0304000 |
| Transcript ID | LotjaGi6g1v0304000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT4G03020.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|O24467|LE14B_PRUAR LEC14B homolog; TrEMBL-Plants: tr|A0A0L9VEN6|A0A0L9VEN6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0304000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62148305..62155008) extracted from Lotus japonicus Gifu genome v1.2.
GACCAAACTTATTTTATACCAAAAGAAATGCTATTATTTTTGGTTTGTCTTTAATTAAAAATAAAATCTACGTGCCTCTA TTTGCTCCACGTACACTTTGCAAATTGAGAAGAATCCAAGCAAAGGCCAAAGGGCTTTGACAAAACTTCAATCCATACTT CACTCATCAATTTCCTCACACAACAGACAACACAGACACACACATTCGCTGACTATAAACATACATGCATACATACATAG TTGTGGTCGAAAATCCCAACCTGGTCTCTGTTCCTTGATCCCCCACAGCTTCATTCTCCAATCAGAGGTAACCAAACATC AATCTTCATTCCTCAATCATCATCTATACCCGTTTATTCATTTGATTTTGTTCTAATTTTCACCGTCAACTGTTTGCTAA GTCTCAGTGATTGGGAATTCAGTTTCATTTCATACCCAGATGTTCATTTTTCTTGTAATTCTTAGAATTGGACTAAAGTT TCTTTCTTTTTGTTGAATTAGTTCGTTTCCCTCATTTTCTTATTAAAAAGGGCTGAACTTGAAAAAGGGTTTTGGTTCTG ACTTCTGAAACTGAAATGGGTTCTCTGTTGGCACTGAATGCACTGTATTAGTAGTATAGATGATAATTTTTAGGTTTGGA ACAGTTTAATTTGTCAATATTTCTGCATATTCTTGTGTGTTTGTGATTGAAAATTCCAAAGGTTCAGAGTTTCTTAGAGT TGATGCTGTTTGTAGGATATAGAGAAAGTAAGAAGCTAAGAATAGATTATGAGTCGGTCGCGCAAAGATACGAGTAACTG TGGGGATGGTAGTAGCAGCAATGAATCTCGTGAAGCTGGAGAAGGGACAAGTGATCTTGATCATGAAATTGCACAGCTCA CAAAACTTGGGTCAAGTCCCCATGAGCATTTGGGTCGTGTTGGTCCCGGTAGGATGAAGCTACCTGCATCAACTGTGAGA ATGTTAGCGGGTAGAGAAGGTAATTATTCTGGACGGGGGAGGTTTTCAGCAGCAGATGGATGCCATGTGTTAAGCCGCTA TTTGCCGACGAAAGGTCCTTGGATTGTGGATCGGATGAAAAGCCGTGCCTATATTTCGCAATTTTCAGATGATGGTTCTC TTTTTATTGCTGGATTCCAGGTTATTTCTGTTATTGTTATTATTATCATTGTAGTTACTGTTATATATAAATAATGTATG AAGCTGAAGATGATTATGTTTAGTTGAAGAGTCTTGTAGTTGTGAAACTATAGTTATGGGACAAAAGGGCCTTTAAATCA CTGTTAGTTATTCCTTCCTTGTTATGAAACAGGGAAGCCACATCAGGATATATGATGTTGACAAGGGGTGGAAAGTTAAG AAGGAGATCTCCGCTAGAAACTTACGGTGGACAATTACTGATACTTCTCTCTCACCAGATCGACAATATCTTGTAAGTTT GGGTTGCGTTCCTTATGGGGTAGCATTCGTGGACTCTATTAGGATGAAAAATTTCCTCTTACAATCAATTCTGACCTTGG CTTGTGAATCTTTTACAAGTTTGAGCACCCTATACCACTTTTCTTCTTCTTCTAACTTCTCTCATTTGGCAAATTGTTAA TTAATAATGGCAGGTTTATGCTAGTATGTCACCAATTATCAATATTGTCAATGTGGAATCTGCCACAACAGAGTCAGTAG CAAATGTTACAGTACGTGCTGAAAATCTCTCACCTTTAATCATAGCAGATGTTACAATTACAGTTTTTTCCCTACTTGTG TGCTACTTATATTCTTTGCTATTACTGTACTTTCATTTTTTTTTTCCTTATGAGATAATACATTAGTTGGCTCATTGTTA TGAGCAATGTGAATCTGTAAACTAATGAAATACATCACAGTTGAGGTTTGTCTAACAACATATGTGGAATGGGTAAATCT GTAATGTCCTTTGCCAAAGATACAGCCGACCTCTTTATTTGCTGCTGTGATTAAGTAGCTATATAAACTAGGGCTGAGCA AGATTATCCAGCCCGACCCAAACCCGAAAAAACCGACAAAAAAAGAAACAATGGGTCGAGTCGGGTCGGGTAGACAGTTA AGGCGAAAGGGGAAGATAGTTTCAGACGGGTAATAATGGTCGGGTACGGGTTGGAAATTTAAAATCCAATTTTACCCGAA CCCGACCGTAATAAATGAATATAAATATTTTTATAGGTACCTGTTCGTATCTGAGACTACTTCTGTGCACTACTACTGAC TTGACTGACCCTACTAGTAGAACAACATAGCTTGTCTTTTGCGTACTAATCAATGACTGTCATAATGTCATTGTCTACTT TATCAATAATCAGATTAGTTTGCATTTTTTTTACATGGGAAAAGTAAAAAAGTAAATTAAACAATTGTGTAGTGCTCTAC AACTTTACCATTCATAATTCATTACACTGCCCAATGCCCCTTTATTCAAAATTTTATCTCAACCTTATCCTTCAATCTTC TTTCTTCTCAACCGTTCACACACTCCCACCACCGTCATCGGCCATTCTTCTCCCTTCTTCCTTGTTCCTCTCCACCTCCG CGACCACATCTACTCTTCTCTCTAACGGATCTTCATTGCCTCGTCCAACACCCCATGGTTGTGTGCGGCCATCAAACCTC GACAGACCCCCTTCTTCCCTTTTCCTCCATGCATGGCTCAAGGACCCCAAACCCACTCTCCAACTCATGGATTCTCTCTG TTCTGGCCCCCCTAGTCTGAGTTCTCACTCAAAAACTGTTTATTTAGAGACTCGCAGTGTTGTCTAAGCATTTGAAGATG TCAACGAAAGTGAATCAGGAAAGTGAATCTAGGAAAGTGACCAAAGGAAAGGCTGGAAATATGAATATTTTGTTGTATTT TTTCCATGCTTCAGTGATTAGAGTAACTGGATCTTTCTCTGTAAATTTTATTCTTCTTAATCTCTCTGTTTTTAGGATAT TTTTTCTTTGATCTTCCCATCTTCTATATTGGGTTTCCTTCTTAATTTTTTTTTTCCTGGGTTCAAACCGCCCCAACCCA CCGAAGCTACCCGCCACCCGGTTCAACCCAAACCGACACACCCGTAATCATACCATGGGCGGAATCGGTGGTGAATATGC TTGATTGAAGCCCGTTCAAACCCGGTATGTTTCACCCGAACCCGACCCATGCTCAGCCCTAATATAAACTTCTTGTGCTT TAAACGTTAAACCTAAAATATTTTATGATATAATATATTCATGTACGTCACACACATTGAATTATTTTTTAATTTACATT CAGAAATCCTTATTTGATTGCAGGAAATTCATCATGGATTAAATTTCTCTTCTGATGAGGATGGGGATGAATTTGGGATT TTCTGTATCAAATTTTCAACAGATGGGCGGGAGCTTTTGGCTGGAACTAGTGATAGCTCGATATATGTATATGATCTCGG AGCAGATAAGCTTAGCCTTAGAATTCCTGCTCACCTGGTAATATATATTATTTTCCCATCATTAGTTGCTAATTTTGAAT TATTTAAAAAAATATATCAAATGTATAGGATACTAATTGAAAGTTGGCTGACTGCTTAGAGTCAGAGTAGTAAGTCAAAC TCAATGTCTGCTCAAATTTTTTAGTCTTTTGGTTCATTTTGGGAATAGTTTAGGGCTTCGGGGGAAGCGATGGAAGAGTG GACACTTCAAAAATAGTTGTACCCTTTTGGACATGTATCTGTCAGATGTTTCAGATACTCCCAATTGCATTTTATTTTAT TTTCTTTCTTTATTTTTAGGTTTTATAACATTGCAGATGCTAATCCACCTCAATATTTAGAATTTTAGATTAATTATAAT AATTTTATTGTGTTTACAAATTACAATGACTCACGCTCTTCTTTAACACACTGGTTCTTTCTTTTGATTTATGTTTTATT CCTACCCTGTAATGATTTTATACATTCTATTATAGCCATGTCATCCTATAATTTGTTTCCAAGTTTACTTGTCTTATGTC GTATCCGTGCTTTCTAGGTAAGCATAGGTATTAAGGTAGCGAAATTTTTAGCCTGAAAATCTTTTCTGTCAGTTCTTCCG TACTTGCAGAATAAATTATTAATAATTTTTTTCATCGCTTTGAAGTTCAATATGATGACTTAGATGGAGTTTCTTTTGCC AGTATGAAGGGCAGACCATATCTGATGTTCTTTTTTTGTGTTGCAGTCTGATGTTAACACTGTCTGCTTTGCTGATGAAT CTGGACATATCTTATATTCTGGAAGTGATGATAGTTTCTGCAAGGTAGACTTCGTATTTTCTTTATAGAAATTTGTTAAT GTCCACAGATCTTTGTGTTGGATTTGATATTTTCCTTTTATGCATGTCTACTAGTGCTTCTACATGTCTCTCGACGCATA CCCAAATCACCTAAGTCTAGACTCTATCATCTTTTCTACAATTGAAGCTAGCCCAACTTTCTATCTAATGATTGTATTCC TAGTCCTATCTTTTGTTCTTAAAGATCGGAGAAGTAGCTATCAGCATATTTATTACTAGTCCAGTTATCTACCTTATTGG CAAAATATGATCAGTTTCTGAATTTTAGTATGGTAAGTGATAGGAGAAAGTTTGACAATAAAATGAGCCCAACAGTTGGA CAATGCAAGTGTTAACTCAAGTTATCAGGTTTTTCAGACTTGCAATGTTGGTATTATGCTGTCAGTTTGTCTAGACTTGC TTGCTTTTATGCTGTTGGTTGCACTAATAAAAGTATTGCGTAAATGTTGTAACTCTATGAACCAAGCTTCAGAAGGCTTG GATATGTTTTGCTTATGCTGAAATCTTCGCAGCAAGTTCTCTATAAAACACTCAGCATTTTGGTAAATATGACAATAATA TAATTTATGAATGCAGTTGCAGAATGCTCACAAGGTGCAAGCCGAAGGACCATGTTCTTTTAAGTTTGGACATGCTTCTA ACTAAATGAGCTTGAAATTTAAATTAGCTCCTCAATTAGCTGTTCATGGACACCTTTAATAATTTTCAAACCATTTATTT CCATTTCATTGCTTTGGTTTTTGTGCTTGGATTACTCAGTGAAGGAATTCTTGGTTGTTATGACTTCACACAGGTGTGGG ATAGGCGTTGCTTTGTCTCAAAAGGACAACCAGCTGGTATCTTAATGGGACATTTAGAAGGCATTACATTCATTAATAGT CGTGGGGATGGCCGCTACTTAATATCTAATGGAAAGGATCAAACAACCAAATTATGGGACATAAGGAAGATGACTTCGTC TTCTAATGCCGTAAAGTAATAAAACTACTTTGTTCCTCATTTTGTTACGTGGATACATAGTTATGCTATTTCATTTTTTA CTTTCCCTCTTTATGGAAGAATAGAATTTCAGAGTGATAACTCAGTTACAAATTACAATAAGGCCTTTAGTTGGCAAATT TGTAGTAGCTCTGAGTCTGAAAAATCAAAGAACTCCATTTTTATTTTTCCCTTCATAGTATAATGTATATTTAATGATGA TGCTTATCACTTAAACCAGCAGTATGGGCCTTGGAGATGACGAGTGGGACTACCGGTGGATGGACTACCCTGAATATGCA AGAAAAAGAAAGCATCCTCATGACCAGTCATTGTCAACATACAAAGGCCACTCAGTGTTGCGCACTCTAGTTCGCTGTTA TTTCTCACCATCATATAGGTAACTGTATTTTCCACACCTTCTCAACTGGGTCTATCTGTTCTTTTACATGATGAGAGTTT CTAATTTATCCAAAATATTTAGTTTTTGAATCACACATTATATTTTGTAATTCTTATGAAATCATCAAATCAAAATAACT ATATTTTACTTGAATTAATTTTAGTTTTGAGTTCTAGAGTTGATTGAACTAGATGAGTGACATCTGTTTGTTAACCTGAG TATTGCTTTTGTTGTGATGATGTTCCTTGTTCTCTTTACAATTTACATATGATGTTTCTAAGAATGTGAGATGTGAGTGA TATCTCGTGTATTTGTTGTTGCAGCACTGGTCAAAAATACATTTACACCGGGTCCAGTGATTCTTCTGTCTTCATATATG ACCTGGTAAAAAAATTGCTTCCATATTGTATTAAGTATTAACACTTTCTATATTTGCATGATGTCTAACCCTTTTCCTTT TGGTTCTTATCACATAACATGGATGTCTAAAAATGGTAGTTCACATTCTTTGTAGGTGACTGGAGCTCAAGTTGCAAAAC TTGATCATCATGAGGCACCTGTTCGAGATTGTAGCTGGCATCCTTACTATCCAATGATGATCTCTTCAGCCTGGGACGGT GACATAGTTAGGTGGGAATTTCCTGGAAGTGATGAAGCCCCTGCTCCTCGAAACAGAAGAGCCGGTCGAAATCGCATAAT TAGAGGTTTGTTTTATATGTAGCTCATGTTCTTTGTACATAATGTGTGTTTGGGTCCATATATTTTGGTAGCTATACCGA ATTTATGTGTCTTTCTCTTTACTTTTCTATCTCCCCAAGCTGTAGAAAGGGTCCCAAAAATTTGTTAAATTTATCTGGTT TCTGTAAGATTTGTAAGCCTATCATGGATGAACATAAAGCCGTAGATAAAGTTCTTAAATCAAATAATGATATGTGAATA TTTGTTTATTACATTAAATGGCTTGTTAGAAAAGTGGACTTGTACGTAATGAAGAACATTTAAA
CDS sequence (LotjaGi6g1v0304000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCGGTCGCGCAAAGATACGAGTAACTGTGGGGATGGTAGTAGCAGCAATGAATCTCGTGAAGCTGGAGAAGGGAC AAGTGATCTTGATCATGAAATTGCACAGCTCACAAAACTTGGGTCAAGTCCCCATGAGCATTTGGGTCGTGTTGGTCCCG GTAGGATGAAGCTACCTGCATCAACTGTGAGAATGTTAGCGGGTAGAGAAGGTAATTATTCTGGACGGGGGAGGTTTTCA GCAGCAGATGGATGCCATGTGTTAAGCCGCTATTTGCCGACGAAAGGTCCTTGGATTGTGGATCGGATGAAAAGCCGTGC CTATATTTCGCAATTTTCAGATGATGGTTCTCTTTTTATTGCTGGATTCCAGGGAAGCCACATCAGGATATATGATGTTG ACAAGGGGTGGAAAGTTAAGAAGGAGATCTCCGCTAGAAACTTACGGTGGACAATTACTGATACTTCTCTCTCACCAGAT CGACAATATCTTGTTTATGCTAGTATGTCACCAATTATCAATATTGTCAATGTGGAATCTGCCACAACAGAGTCAGTAGC AAATGTTACAGAAATTCATCATGGATTAAATTTCTCTTCTGATGAGGATGGGGATGAATTTGGGATTTTCTGTATCAAAT TTTCAACAGATGGGCGGGAGCTTTTGGCTGGAACTAGTGATAGCTCGATATATGTATATGATCTCGGAGCAGATAAGCTT AGCCTTAGAATTCCTGCTCACCTGTCTGATGTTAACACTGTCTGCTTTGCTGATGAATCTGGACATATCTTATATTCTGG AAGTGATGATAGTTTCTGCAAGGTGTGGGATAGGCGTTGCTTTGTCTCAAAAGGACAACCAGCTGGTATCTTAATGGGAC ATTTAGAAGGCATTACATTCATTAATAGTCGTGGGGATGGCCGCTACTTAATATCTAATGGAAAGGATCAAACAACCAAA TTATGGGACATAAGGAAGATGACTTCGTCTTCTAATGCCGTAAACAGTATGGGCCTTGGAGATGACGAGTGGGACTACCG GTGGATGGACTACCCTGAATATGCAAGAAAAAGAAAGCATCCTCATGACCAGTCATTGTCAACATACAAAGGCCACTCAG TGTTGCGCACTCTAGTTCGCTGTTATTTCTCACCATCATATAGCACTGGTCAAAAATACATTTACACCGGGTCCAGTGAT TCTTCTGTCTTCATATATGACCTGGTGACTGGAGCTCAAGTTGCAAAACTTGATCATCATGAGGCACCTGTTCGAGATTG TAGCTGGCATCCTTACTATCCAATGATGATCTCTTCAGCCTGGGACGGTGACATAGTTAGGTGGGAATTTCCTGGAAGTG ATGAAGCCCCTGCTCCTCGAAACAGAAGAGCCGGTCGAAATCGCATAATTAGAGGTTTGTTTTATATGTAG
Protein sequence (LotjaGi6g1v0304000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRSRKDTSNCGDGSSSNESREAGEGTSDLDHEIAQLTKLGSSPHEHLGRVGPGRMKLPASTVRMLAGREGNYSGRGRFS AADGCHVLSRYLPTKGPWIVDRMKSRAYISQFSDDGSLFIAGFQGSHIRIYDVDKGWKVKKEISARNLRWTITDTSLSPD RQYLVYASMSPIINIVNVESATTESVANVTEIHHGLNFSSDEDGDEFGIFCIKFSTDGRELLAGTSDSSIYVYDLGADKL SLRIPAHLSDVNTVCFADESGHILYSGSDDSFCKVWDRRCFVSKGQPAGILMGHLEGITFINSRGDGRYLISNGKDQTTK LWDIRKMTSSSNAVNSMGLGDDEWDYRWMDYPEYARKRKHPHDQSLSTYKGHSVLRTLVRCYFSPSYSTGQKYIYTGSSD SSVFIYDLVTGAQVAKLDHHEAPVRDCSWHPYYPMMISSAWDGDIVRWEFPGSDEAPAPRNRRAGRNRIIRGLFYM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PIRSF | 1 | 472 | 472 | 4.0E-204 | ||
| PANTHER | 5 | 468 | 464 | 3.3E-253 | – | |
| PANTHER | 5 | 468 | 464 | 3.3E-253 | – | |
| MobiDBLite | 7 | 23 | 17 | - | – | |
| SMART | 93 | 132 | 40 | 69.0 | ||
| Gene3D | 94 | 345 | 252 | 3.3E-37 | ||
| SUPERFAMILY | 102 | 449 | 348 | 6.72E-53 | ||
| SMART | 136 | 177 | 42 | 270.0 | ||
| SMART | 195 | 234 | 40 | 0.19 | ||
| ProSiteProfiles | 202 | 458 | 257 | 23.361 | ||
| ProSiteProfiles | 202 | 243 | 42 | 9.239 | ||
| Pfam | 207 | 234 | 28 | 0.045 | ||
| SMART | 237 | 277 | 41 | 2.5E-5 | ||
| ProSiteProfiles | 244 | 277 | 34 | 10.508 | ||
| Pfam | 245 | 277 | 33 | 0.0016 | ||
| SMART | 284 | 323 | 40 | 0.0046 | ||
| Pfam | 286 | 323 | 38 | 0.041 | ||
| ProSiteProfiles | 291 | 332 | 42 | 12.213 | ||
| Gene3D | 355 | 461 | 107 | 2.2E-14 | ||
| SMART | 362 | 407 | 46 | 0.35 | ||
| Pfam | 364 | 407 | 44 | 0.055 | ||
| SMART | 410 | 449 | 40 | 1.5E-4 | ||
| Pfam | 414 | 448 | 35 | 0.017 | ||
| ProSiteProfiles | 417 | 458 | 42 | 9.172 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0304000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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