Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0312500 |
Transcript ID | LotjaGi6g1v0312500.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transporter; TAIR: AT2G43330.1 inositol transporter 1; Swiss-Prot: sp|Q8VZR6|INT1_ARATH Inositol transporter 1; TrEMBL-Plants: tr|G7JAP8|G7JAP8_MEDTR Sugar porter (SP) family MFS transporter; Found in the gene: LotjaGi6g1v0312500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63073995..63078678) extracted from Lotus japonicus Gifu genome v1.2.
CGAACACTGAACTGAATATATACTATGATTGTAAATCTGATGACATTACTTGATGGCGAACACGTCGTCATTAACTTAAT TTAGACAAAAGTGTCCCCTAATTATAATTTATTTTTGCATTTTGATCTGAAACAAAACGTTGAAATAGTGTCTCCGTCAT CTCTCTTCTCTTTCTGCAACCAACTCCCACGAGACGGTCTTGGTCTTCGAAGATGGTGCATACAAACACGATGACGACGC CTGGGAGCTCCGATTACTTGGAATTGTATCCGGAGAGGAAAATGTCCTACTTCAAGAATCCCTACATTCTCGGAGTCACT GCAGCTGCTGGCATAGGTGGACTCCTCTTCGGCTACGATACAGGTAACACTAACACCACCTCTTTCAATCTCAATCTTCG GCATAGGTGGATTGGATTTTTATTAGTTTAAGTTCATGAACTAATTTGATTATCAATTTGAGATTCTCAGCTTTTAATTG TTGTATCACTTTTCTTGTATGTGTAATGTTTACATTTTATCTTAATCCATTTATTAAATATGTGCTTTTTAACTGTTTGT GTATGTCTACATGATGATGATCCCTGTATATTGTTCAAAGTTGTCAATTGTTGATGGAAATAGGTGGGGATGAAGTGAAA TAAGAATAGGATTCATGTTTTGAATTGTAATGAAACAAGATGGAATGGACTGCGTAATGCATTTAATTTAATTTCATTCA AAACTTTTTTTTTCTTTCTAATTTGGAGAATTTCATGGATAAGATTTTTCTTTTCAATTAATGGATTGGTAATTGATTTC ATTTTGTTCATTTCACTCTATTCTGACTTAACTTGGAACTCTGTTATTTGCTGCAGGTGTTATATCAGGGGCCCTTCTCT ATATTAAAGATGATTTTGAGGAAGTCCGCAGAAGTAGCTTACTTCAGGTACAAGCTTTTCTGCTCAGATGAATGTTACAT TCATTTTTTTGATTGCCTGTTTCATAAGTGGTTAGTTTGGTCTCAGATCTATAAACACGGTAGGTTTAATTTCAAATGTA CACGATTTTGGCAGTTCGGAAGAGAAAGAAGATATGGATATGATAATGTATTGTTTTATGGCTTTACTGCTGCAATTGCA GAATTTATGGTTCCAGTGCCAAAAATAGAGACAACTTCTCGCTAGTTACTGCACTCCGGAGTTTTCATGGTGTGCTACTG TGCATTATTTATAATTTGTACGTTTATTGCTTATTCCTTTTTCCTGTTTCTTTTATCCTTTTATTTTTCTGTATGCCTGT GGCTCTGTAGAGGGTGGATTGTTGGAGTTGTACTTTATTTCCACTAAAAGCCAGAAACATTACTATCTATTTAGATAAAC TAAACTTGCTGCTTGTTAGTATCCTTTAGCATACATGTCCATATTGCCTTCTCTGCAATCTAAATCATTTTTTACTTTAA CTTGCCAGGAAACAATTGTAAGCATGGCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCG TTTGGACGTAAGAAGGCCACCCTCAGTGCTGATGTTGTCTTCACTCTTGGATCACTTGTTATGGCTGCTGCACCAGATGC ATATTTTGTCATATTTGGCCGTCTTCTTGTTGGCCTTGGGATTGGTGTAGCTTCTGTCACTGCTCCTGTATATATTGCAG AATCCTCACCATCAGAAATAAGGGGTTCATTAGTGAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTAC CTCATAAATCTTGCCTTTACCGAGGTAGGCCGCCTATCGCTCTTTTTTCTTTAAACTTCCTATTTCTAGTCATGCTGACA CTGCTTGGCTGCTTTGGCATTCAAGTAAATGCTCTGTGGAAGAAAACTGTTAATAGTTTATATTTATGTGAATGAGCTAT TGTGCGGGTTTGGCTTCTACATAAATTGTCCAAACGTGTTTGCCTAACTTGTTGGGAGTTTTGATTTGTCAGGGGCTGTA AGTCAGAGGTTGTCACTATTTTTGGATGGTTTAATAGCCTTTGGTATTGGGTGTTTGGCTTTGGGATAGAAAGCATTGTA TTTTTAGCTTCTGTCTTTCATTTGTACTGAGGGTTGATGTCTTTCTCATCCTTTAGCATTTCATGGGGTGTTTTTGTTTA ATATTCTTGGGGTGTATTTTAGAATTTTCTGGTTTTATCCATTGAGAAGGATTGTTCCTCAAGTTCTATATTATTATTGA ATGAATTCTTTTTCTTTCGAAAAAAAAAGCTTAATTTTGTACTATTCGTGTAAATCTGTATACTGTTTTTTTAATGATGT GTTGCAGCGTAGTTCATTAAAGGGCATCATGACATTATCATTGGATAATAGTGAAAAGCTTTATCACACTCACCATCTAT TTAAAATGAATTCAATTTTATATTTCTAAAAACTTGCAAGGGCATGTTGTTCAAGCAACAGTTGATGCAATGAAAGTCTG AATAATTTGATATTTTCTTTGGCTCAATGGCATTGTTATTGCCTATTAAGGGATTTTGTAATGCTTTAGAAATCACCTAA TGAAATCTTAATGGGGCAGGTTCCAGGGACTTGGCGATGGATGCTAGGAGTTGCTGGTTTGCCAGCTGTTATTCAGTTTT GTGTTATGCTTTTCCTGCCTGAGTCTCCAAGGTGGCTTTTCCTAAAGGTGAAAAGCTTCTATTTCATTTGATGAATTATA TTTGAGAATTGTTAACTTAAATGCTTTCCCAGTGCTGAAAGTTATATTACCCTGGTATCTTATATACAGAATAGGAAAGA GGAAGCTATTTCTGTACTTCGTAATATCTATGATTACGAGCGCCTGGAAGATGAAGTCAATTACTTCGACTCTGTTTCTC AGCAAGAACTTCAGAAACGGATGGGCATTAAATCCATGGATGTTTTCAGATCAAAGGAAATCAGACATGCATTTTTTGTT GGGGCTGGACTTCAGGTCATTGACACAAGCCTAACTTTTCTGTTTCTAAACTACACTTCCTTGTGTTTTTTTTTTATAGA ACCAAGTTACAGTAAGCTTCTATAACGTTTTACAGTCTCAACACTCAACAGTATTGAATGCATCATGCATACTTTTGAAA TTGCTTGCATCTTAAGCTGTTTAACTTCTTTCACTTGTTCATTATGCTGCAGGCTTTTCAGCAGTTCACAGGCATCAGCA TAGTCATGTACTACAGCCCCACAATCATTCAAATGGCTGGGTTTAATTCCAACCAGTTAGCTCTTCTCTTATCCCTCATT GTTGCTGGCATGAATGTTGCTGGAACAATTCTTGGCATTTATGTAATTGACCGTGCAGGGCGAAGAAAATTGGCTCTCTC AAGCATGTCAGGTGTAATTGTAGCTCTGGCAATCCTTTCTGCAGGATCATACCTTGAAGCATCTGACTCCACAAATAGAA CCTACGGGTGGATTGCAGTCATTGGTTTAGCTATGTACCTTCTTTTTTTCGCTCCAGGAATGGGACCAGTGCCATGGACT GTGAACTCAGAAATCTATCCAGAAGAATTCCGAGGTGTATGTGGGGGCATGTCAGCCACTGTAAACTGGGTTTGCAGTGT GATAATGTCACAGAGTTTTCTTTCAATTTCTGATGCTGTTGGCCTTGGTGGGAGTTTTGCGATTCTTGGTGTTATAGCCG TGGTTGCATTCTTATTTGTGCTCTTGTTTGTGCCAGAGACAAAAGGATTGACATTTGAAGAAATGACACTCATATGGAAG AGGAGAGCCAGGGGTAAAGATTATGACACACAAAGCCTTCTTGAGGGAAACCAGTCCTAATCCTAAGGTGTCTCGGTTTG TGAGCAGCAGCATTATTTGACTGGAGCTAGGAAACCAGTCATAGGCGTTTGATATATATGGCTTTGTGTGCAGCAGAATT TTAAAGATACATATATTTCTGAAATAGATTTTTATAAAACATACATTTATATTCATTTCTTTAATAATATAATTTATATT GATTTAATACTTAAGCAAATCACGGTTTACACAACTAGTTTTACTTTAATTTTGGTAAATTTGTTTCACAAGTGAAACAA TAATACAATTGAAAGTAAACTAAAGGAGAGCCATTTGCTTGATATTAATTGGATAAGAATCATCGGGCGGGCCATTAACA GCTCTCCATGCATATATGTATATTACAGGTTGTGTTGGGTGGAATGCATCCCAAAAGACATATCGGCTTCTGAATGCACA TGGCAGTTGATTAGGGAGACATGATATTTGGCCGCGATACATTCCAATTCCACAACAGGCTCTATCAACAACATTAAGCG CTGCAAAAGATAATCATTACCATTTGGTTAAATTCATCATCTTCATTTTTATTCATTGTGTAAATTGATTGAGAAGAGAT TATTATATCTTACAGTAGGCAGAAGGGTTGTTTAGAATATCTCCAATGATACGATAAGTGTTACCATATGTAAATATGGC ATCAGGGTGATTTTTGTTCAATTGTTCCACCGTTGATCTAAGCCCCTCATTGAAGGGTCCAACCATTTGATTTACCAAGT CCACACACCTTCCTGGTGGGGACAATCCTCTGGCTCTTTGATGAGGGGTGCAACCGAGTGGTCCAATTCCTGCTAGGAAG AACTTCCTGAGACCCAAGTTATATAGTGCCTGCAATAAAGCATG
CDS sequence (LotjaGi6g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCATACAAACACGATGACGACGCCTGGGAGCTCCGATTACTTGGAATTGTATCCGGAGAGGAAAATGTCCTACTT CAAGAATCCCTACATTCTCGGAGTCACTGCAGCTGCTGGCATAGGTGGACTCCTCTTCGGCTACGATACAGGTGTTATAT CAGGGGCCCTTCTCTATATTAAAGATGATTTTGAGGAAGTCCGCAGAAGTAGCTTACTTCAGGAAACAATTGTAAGCATG GCATTGGTTGGTGCAATTATTGGAGCAGCAACAGGTGGCTGGATTAATGATGCGTTTGGACGTAAGAAGGCCACCCTCAG TGCTGATGTTGTCTTCACTCTTGGATCACTTGTTATGGCTGCTGCACCAGATGCATATTTTGTCATATTTGGCCGTCTTC TTGTTGGCCTTGGGATTGGTGTAGCTTCTGTCACTGCTCCTGTATATATTGCAGAATCCTCACCATCAGAAATAAGGGGT TCATTAGTGAGCACAAATGTGCTTATGATAACTGGTGGACAGTTTCTTTCTTACCTCATAAATCTTGCCTTTACCGAGGT TCCAGGGACTTGGCGATGGATGCTAGGAGTTGCTGGTTTGCCAGCTGTTATTCAGTTTTGTGTTATGCTTTTCCTGCCTG AGTCTCCAAGGTGGCTTTTCCTAAAGAATAGGAAAGAGGAAGCTATTTCTGTACTTCGTAATATCTATGATTACGAGCGC CTGGAAGATGAAGTCAATTACTTCGACTCTGTTTCTCAGCAAGAACTTCAGAAACGGATGGGCATTAAATCCATGGATGT TTTCAGATCAAAGGAAATCAGACATGCATTTTTTGTTGGGGCTGGACTTCAGGCTTTTCAGCAGTTCACAGGCATCAGCA TAGTCATGTACTACAGCCCCACAATCATTCAAATGGCTGGGTTTAATTCCAACCAGTTAGCTCTTCTCTTATCCCTCATT GTTGCTGGCATGAATGTTGCTGGAACAATTCTTGGCATTTATGTAATTGACCGTGCAGGGCGAAGAAAATTGGCTCTCTC AAGCATGTCAGGTGTAATTGTAGCTCTGGCAATCCTTTCTGCAGGATCATACCTTGAAGCATCTGACTCCACAAATAGAA CCTACGGGTGGATTGCAGTCATTGGTTTAGCTATGTACCTTCTTTTTTTCGCTCCAGGAATGGGACCAGTGCCATGGACT GTGAACTCAGAAATCTATCCAGAAGAATTCCGAGGTGTATGTGGGGGCATGTCAGCCACTGTAAACTGGGTTTGCAGTGT GATAATGTCACAGAGTTTTCTTTCAATTTCTGATGCTGTTGGCCTTGGTGGGAGTTTTGCGATTCTTGGTGTTATAGCCG TGGTTGCATTCTTATTTGTGCTCTTGTTTGTGCCAGAGACAAAAGGATTGACATTTGAAGAAATGACACTCATATGGAAG AGGAGAGCCAGGGGTAAAGATTATGACACACAAAGCCTTCTTGAGGGAAACCAGTCCTAA
Protein sequence (LotjaGi6g1v0312500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHTNTMTTPGSSDYLELYPERKMSYFKNPYILGVTAAAGIGGLLFGYDTGVISGALLYIKDDFEEVRRSSLLQETIVSM ALVGAIIGAATGGWINDAFGRKKATLSADVVFTLGSLVMAAAPDAYFVIFGRLLVGLGIGVASVTAPVYIAESSPSEIRG SLVSTNVLMITGGQFLSYLINLAFTEVPGTWRWMLGVAGLPAVIQFCVMLFLPESPRWLFLKNRKEEAISVLRNIYDYER LEDEVNYFDSVSQQELQKRMGIKSMDVFRSKEIRHAFFVGAGLQAFQQFTGISIVMYYSPTIIQMAGFNSNQLALLLSLI VAGMNVAGTILGIYVIDRAGRRKLALSSMSGVIVALAILSAGSYLEASDSTNRTYGWIAVIGLAMYLLFFAPGMGPVPWT VNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVVAFLFVLLFVPETKGLTFEEMTLIWK RRARGKDYDTQSLLEGNQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 30 | 30 | - | – | |
PANTHER | 6 | 497 | 492 | 1.1E-248 | – | |
PANTHER | 6 | 497 | 492 | 1.1E-248 | – | |
SUPERFAMILY | 26 | 475 | 450 | 1.96E-73 | ||
TIGRFAM | 27 | 475 | 449 | 2.5E-120 | ||
Gene3D | 28 | 484 | 457 | 4.0E-130 | – | |
Phobius | 31 | 60 | 30 | - | – | |
TMHMM | 31 | 53 | 23 | - | – | |
ProSiteProfiles | 35 | 468 | 434 | 55.488 | ||
Pfam | 36 | 479 | 444 | 4.3E-117 | ||
CDD | 38 | 466 | 429 | 1.89481E-179 | – | |
PRINTS | 43 | 53 | 11 | 1.1E-26 | ||
Phobius | 61 | 71 | 11 | - | – | |
Phobius | 72 | 94 | 23 | - | – | |
TMHMM | 73 | 95 | 23 | - | – | |
Phobius | 95 | 105 | 11 | - | – | |
TMHMM | 104 | 123 | 20 | - | – | |
Phobius | 106 | 123 | 18 | - | – | |
Phobius | 124 | 128 | 5 | - | – | |
TMHMM | 128 | 150 | 23 | - | – | |
Phobius | 129 | 150 | 22 | - | – | |
PRINTS | 129 | 148 | 20 | 1.1E-26 | ||
ProSitePatterns | 134 | 159 | 26 | - | ||
Phobius | 151 | 161 | 11 | - | – | |
Phobius | 162 | 184 | 23 | - | – | |
TMHMM | 163 | 185 | 23 | - | – | |
Phobius | 185 | 189 | 5 | - | – | |
Phobius | 190 | 212 | 23 | - | – | |
TMHMM | 190 | 212 | 23 | - | – | |
Phobius | 213 | 275 | 63 | - | – | |
Phobius | 276 | 298 | 23 | - | – | |
TMHMM | 277 | 299 | 23 | - | – | |
PRINTS | 287 | 297 | 11 | 1.1E-26 | ||
Phobius | 299 | 312 | 14 | - | – | |
Phobius | 313 | 337 | 25 | - | – | |
TMHMM | 314 | 336 | 23 | - | – | |
ProSitePatterns | 332 | 348 | 17 | - | ||
Phobius | 338 | 343 | 6 | - | – | |
TMHMM | 343 | 365 | 23 | - | – | |
Phobius | 344 | 365 | 22 | - | – | |
Phobius | 366 | 376 | 11 | - | – | |
TMHMM | 375 | 397 | 23 | - | – | |
Phobius | 377 | 401 | 25 | - | – | |
PRINTS | 380 | 401 | 22 | 1.1E-26 | ||
Phobius | 402 | 412 | 11 | - | – | |
PRINTS | 403 | 415 | 13 | 1.1E-26 | ||
TMHMM | 410 | 432 | 23 | - | – | |
Phobius | 413 | 434 | 22 | - | – | |
Phobius | 435 | 439 | 5 | - | – | |
Phobius | 440 | 464 | 25 | - | – | |
TMHMM | 442 | 464 | 23 | - | – | |
Phobius | 465 | 499 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0312500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…