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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0327200 |
| Transcript ID | LotjaGi6g1v0327200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Optic atrophy 3 protein (OPA3); TAIR: AT1G28510.1 Optic atrophy 3 protein (OPA3); Swiss-Prot: sp|Q9P7W0|OPA3_SCHPO OPA3-like protein; TrEMBL-Plants: tr|V7BQ30|V7BQ30_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0327200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:64219851..64224490) extracted from Lotus japonicus Gifu genome v1.2.
TAGCATAAACTACTCCACCTTTAGTAAGCAACCAAACAGCGGCTAATAGGTCCAACCAGCGAACCTTTTCGTTCTTCTTC TTCTTCTTCTTCCTCTTTGTATTCAACTTGTTCTTCTCTCTTCCCAACAAACCACACTCAAAACTCGTCCCTCTTATTTA TCATCGTATCCATTTGGTGTTAACTGTAGTTAAGGTACCACACATTCAAATACACAACACACGACACACATAAGCATTGT TAATAACATAACAGCGAGCAATGGTTCTGCCACTTTTGAAACTTGGAACGTTGTTAGTCAAAACCCTCAGCAAACCAGTT GCTAGTAGGCTCAAGCAGCAAGCTGCACTTCACCCTAGGTTCCGACAACTCATCATTAACATGGCCCAGGTTCGTTCCCT TTCTTATTCTCATTTTTCCATTCCGTACACGCATTGGATTTTTGTTTTAATTTGGTTTCAATGATGGGCTTTTGTTTTGA TCACACCCAAAATTGAATGATGGGGTTTCATTTTTATTTACAAATGGATTTGTTATTGCATTTACAAATGATTTTCATTT CAAATGAATGATACCACATTCTTTGTTTTTTCCAATTCCATTGAATTCCTGAAAAGAAAAGGTTTGTCTTTTGTTGCCCC CTGTATTTGTAGCTGAGTAGTGAAAGGTGTGGTTTAGGCATTGTGAGGCAAGGCCAAAGAAGCTGTTAAGAACTCGTTCT GGTTAAAAGGGTTTAGATAGATTTTGATTGATGTTACATGGATAAGTGTACTGTTAGATTTTAAGGAATAAAACTGTTGA TTATATTATGAATAAATGCACCTTCAAAAGGGGAAGGAAAACAAGAAGCGAAGAATTATTCAATAGATGCAAATTATGGT GATGAGGTCAAATCTGTCTGATATATTCATTGGTTTGTATAGTCAGTATGTAGTAAATACTTTGCCTTACCATATTCAGT GCTGAAACGAGTTCCTTGTCCTGTGATAACAATTTAACAAAATGATGCCAGTATGACATTGGTTCTTCAACTGTGTTAGT GATTCATGGGACCAAGAATAAAAGAATGAAAAGAAAACATGGATTGGATACACTCAGCAGAATAACGTAAAATATAAAGA AATGAGGCAAAGCAATTAGAATAGTTACATAATTGGTTAGGTAGTTAAATTTGTTAAAAGCAAGGGCTTAGCTTAAATTG TAAGAGGATTAGAAGAGGCAGGGATTCAAATTTGTTTCTCTCTGCATGAGCAATCTAACCAATTTGATCGTTCTTGCCAA GCTTTGGATTCATTGATATTGAAGAAGGATTCAGAGTCTCCGTCCTATTGTGTCCTAGCTTTCAACTTATTTGGCCTTAA ATTTGCTGTCTTCTTCCGCCTCAAGGCTAATATGTTTGTTTTCTTCATCCACTTATCCTACAATTGCCGAATTCCTCCTA TGCAATCCACATTCTTCCAAACCTCTACCATGTTACAAACTACTGCGCCACATTATCGCAAACTGTCTTCCTCAAAAACT TACCAACTTCCCCGAAGCTTCTGTCCCCAGTTCCATATTGTCCCTAATAAGAGTTCTGACAAGTTGAACCAAACTTCATT GCATTTGATTGTTATTAAAACATGGACCATAATAGAACAATCAAATTATTCTTAAACACTGCATCTCAGGCATTTTTTTG CCTATCAGAACTTTAATGATGCTTTATGGCCTGTTTTAAGCATTGATTTCTGCTCCTCTTGGAGGACAAAAGAACTCCAC ATTGACTAGAGATATGGCCAAAGAAGTATTTGTACTAGGGTTGGGCAATCCCCCACTCATGAGCTAGCTTTTGGGTTAGA GTTAGACTTAGTCCAAATTTGAAGATGGTGTTAGAGTCTGTCCAGGGATGACAAAAAAAAGAGGATTAGACTTGCAGCCT TTGAGACCCAAGACACAGCCTAGGCAAATGAAAAAATGAATACAGTCCTATGGCTTCTGTGGCAACTTGACGTATTGACC CAGGTTGGAGATTGGAGACAAGTTACAGCATGCCCCAAAGAAAAGCTAGCCCAGTTGACTTGAGGGGGAGTGTTGGAGGA CAAAAGATGCCCCACATTAACTAGCGATATGACTAAAGAAATCCACATAAAAGAGGTTCGGATAATCATAACCCCGGAGC TAACTTTAGGGGTAGGGTTAAGCCTAACCTGAATTTAAAGAAATTCACTGTGGCAAATCCTATTTGAGTTTGGTATAACT AAGTTTTAGAGATAGGTCATTTTCAGGATTAGTTATATGCCGTTTGTACATTGACTTTTGGATGTATATGAGAAATTTTA ACATTTTTATTTTTGAAACAGGCTAATCATCAAGTCTCAACAAAAATGCAAAGGCGCATCTATGGTCATGCAACAGATGT TGAGATTCGCCCTTTGAATGAGGAGAAAGCTGTTCAAGCTGCTGTAGACCTTATTGGAGAACTCTTTGTCTTCTCGGTAA TATGGATTTAAATGTGGAATTGGCTAAAGATATATAGAAATGGGAAATTGATAGCTTCATCAATTACTTTTTTATAGTAA ACTTAGTTTATACTTTCTCTTGAAAAACAAAATGCTTATGAAAGTATTTGCGTATGAGTTTTTGTCTTTGAAGTTAAGGA TCTCCATGGTATCTTAAATAATGGTTCTGGAGAATTTACCTTTTTGAGAATATAACATAAGTTTTTAAGGATATAAAATC CTTGATAAGCGAGAACCCCCTCGGCCCCCCTGAATAAAAAAAAAGAGAGACCCCTGATGGGAACTTTCTAACCCTAAGAC ACTAGACATGAGAATCAATATAATTTTTATATCTTTGTATCCTTAAAACTTGTGTGCATTTCACATGCCTTGTCCTAATT GTTTGTTTCTGTGTAAATGTGCTATATTCATAGGTTGCAGGAGTTCTTGTGGTCTTTGAGGTACAAAGAAGTGCTAGATC TGAAGCACGAAAGGAGGAGATACGAAAGCAAGAGCTAGGGGTAATTTCAAAATCATCATCTAGTACAAATTACACATTCA TCTGACATAATGTGTTAGTTTCAGAGTTTTCAAGTTTTCTTTCTCTTTCTTTAGTTGTTTATCTCTTCCAGTCCTCGTTT TCAAAATTGCTCTATCCTTTATTTATATATTATTTCCTCTCAAATTAAATTATCTTATCATGCTTCCTAAGTTCCTATAC TAAACATTTTCTGATACATAATATGTTTTACCAATGTCATATATGTTGTAGTTCTTTGCTTAATCAACGTCCTCAATATG TACATATTATTTTTTTTACTGGAAATCCTGACCAAATTGAATAGATGAAGAATTTATAGCAAATTAGCAATATTGTTATT GCTGTGAAAACATCACCACTTTATGATGAAGATAAAAAGCATCCGGTGGCTCATGTAGTCCCAATATTTGGTTTTAAGTA CCCTTAACAATTTAGATGAGCACATAACAATGCGGTGCAAGTTCTAACCTAGATATTTGTAGTTTTACTTGTATGGCATA GGTCGAAGCAGTAGAACAGTTTGCCTAGGATGACTTATGAATCAAAAGTTAATTTGTAGAGAAGTTGAACAGAGGTTATG ATGCATATGGTTTCATATTTGAAGATAGCAGGATACTTGGTTACCATTTTTTCAGCTTTTGATTAGTTCAATACTCCAAT CACTATATTTCCTATTTGCTGCCATCAATTCCTATCTATGTTATTGTTGCCCAAAGGTTCCATAATGCTTGGTGGTGTAT TTTATATTCTTAATTTAAAAACTCTATTTGAGATGGTTAAATTGACAATCATGCTGAATCTGGGAATTGAAACTTCTATC TATAAGTAAGCCAGTCCCTCTACCTCTTCCACATGCTGGTATGCCTTGCTTGTGCTAGACCATTTGTAAAAAGCTACTCA GGGCTGTAACAAGGTTGTTGTCTATGGGTTGTGTGTTAGAATGGATACCGTTACTGCAGTTCTATAGAGTAAAGAAAAAG TGGTTTATGCTTATCATCCATGACATTGACCTCGTTCTAGCATTTAAAATCATTGTAAACAACTTTGTAAATTCATTGTT ATTGGTTCCAATTTCAGGCTGAGAAAAGTTTATTGGTCTTAGTTTCATACTTAAGTCATCATTGTTCATTCTTCTTTAGG CTATGAAGCAAAAGAGTGAGGACTTGGCACAAGAGGTAGAACTTCTTAAGCATAGACTTCAAGAAATTGAACAGATGGCC AGGGGACGAGGACTTGCTGGTGTTCTAAATTTCAGACAGGGTAATACAGAAAATGCAAAGACAGAGAAACCTGCTTGATC TAATGAAGACGATATATTTTTCACATTTTTTCATTTATCCTTGGGATAAATGCACAATTTCTGATTCATTTGAGGGTCTC TTCAGCAAGAGCAAATTATTTTTTTCACTACATTAATCGGCTTTTAGTTTCAAATTTGAAATCCTCTATTTGTATTGAGG ATATATCGCTGATTGAAATTCTTGTTGTATTAGCCAAAATAAGCTGCAAGAGACTAATTTATGGTGACAAAGATGTAACG CATTAGATGAGCGGAAAATGCATCAGGTCAAAATTTACCATTTTCCTTATGTACATTTTTATTCCTTTGGAAAACACAAT
CDS sequence (LotjaGi6g1v0327200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGCCACTTTTGAAACTTGGAACGTTGTTAGTCAAAACCCTCAGCAAACCAGTTGCTAGTAGGCTCAAGCAGCA AGCTGCACTTCACCCTAGGTTCCGACAACTCATCATTAACATGGCCCAGGCTAATCATCAAGTCTCAACAAAAATGCAAA GGCGCATCTATGGTCATGCAACAGATGTTGAGATTCGCCCTTTGAATGAGGAGAAAGCTGTTCAAGCTGCTGTAGACCTT ATTGGAGAACTCTTTGTCTTCTCGGTTGCAGGAGTTCTTGTGGTCTTTGAGGTACAAAGAAGTGCTAGATCTGAAGCACG AAAGGAGGAGATACGAAAGCAAGAGCTAGGGGCTGAGAAAAGTTTATTGGTCTTAGTTTCATACTTAAGTCATCATTGTT CATTCTTCTTTAGGCTATGA
Protein sequence (LotjaGi6g1v0327200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLPLLKLGTLLVKTLSKPVASRLKQQAALHPRFRQLIINMAQANHQVSTKMQRRIYGHATDVEIRPLNEEKAVQAAVDL IGELFVFSVAGVLVVFEVQRSARSEARKEEIRKQELGAEKSLLVLVSYLSHHCSFFFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 118 | 118 | 2.4E-71 | ||
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 1 | 118 | 118 | 2.4E-71 | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Pfam | 3 | 117 | 115 | 6.6E-43 | ||
| Phobius | 14 | 17 | 4 | - | – | |
| Phobius | 18 | 75 | 58 | - | – | |
| Phobius | 76 | 96 | 21 | - | – | |
| Phobius | 97 | 116 | 20 | - | – | |
| Phobius | 117 | 137 | 21 | - | – | |
| Phobius | 138 | 139 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0327200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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