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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0341200 |
| Transcript ID | LotjaGi6g1v0341200.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Equilibrative nucleoside transporter family protein; TAIR: AT4G05120.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3; TrEMBL-Plants: tr|A0A072V578|A0A072V578_MEDTR Equilibrative nucleoside transporter 6; Found in the gene: LotjaGi6g1v0341200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65497562..65500198) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTTTTGTGAGTGAGAATGAGATGGTCATGTTTACTACAAATGGCAGTGGAGCAACAAGAAAGCCTGAGGTAAGTGT CCTGTTTTATATTCCTTGGAGAATAGGTTACTAGGATTTCTCAGGAACAAAGTTTGTTAACTTGCCTGTGTGTTTTCAAT AGGGAAAGTACAAAGCAATGGTAGTTTGTTTCATTCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATA GCAGATTACTATTACAAATTGTTCCCCGTAAGTAAGTCACGGTGCTTTTAGTTTCTTTTATAAGACTTGACATCATCCTA CAAAGATTGATTCTTAGGAATAAGTGCAATTCAGTAACTGATTAGAAGCTTTCTTTTCATTTGAAGAAATATCATCCTTC AAGGGTACTAACCCTGGTTTATCAACCATTTGCACTTGTAACAATGTTAATACTGGCATATTATGAGTCAAGGATCAATA CTAGAATGCGGAATTTGGCTGGATTCACACTTTTCTTTGCTAGCACTTTCTTGGTTCTTGTTGTAAGTACACCATTTCAA ATTCCATAATTTGCATTATCTGATTTTCTTAAATTCATGTATGACCTATTTTCTTTGGCTTATATGGAGCTTGAACAATC TGTCGTGACAGTTGGACCTAGCAACATCAGGGAAAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTGCTTGT TTTGGAATAGCAGATGCTCATGTGGAAGGTGGCATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAGGTTGG TCTTTCATTTAATTTATTCAATATTTTAACATTACCCTTGTCAGTTATAATTCCTTCAAAAAATATATATATTTGGAGAA GGGGTTGCACTTGCTGCTATTTTTTTTGCCTAAATTGTTAAGTGTATGCAGTCCTACCTTGCTGGTTTGGCAGCATCAGG GGCTCTAACTTCTCTTCTGAGAATTCTGACCAAGTTAGCTTTTGAGAAATCTCATAATGGACTTCGCAAGGGAGCTAGTA TGTTATTCTTCTTTTACAATGCTCATATATATTGGTTTCTTATATTTGTCTTCTCTTGATGAATTGATTTTGTTTGAGAT AGTGTATGTTTGGGAATGAGTCTGGTCACCACGTTTTCTATCCAGATCCACGTCTAGCGGAAGCAAATAATATGTACAGT TTGCCCCAACGTGCATTGGATGATTGGAGTGTGTGCATGACTCATTTCCAAACATAGTTGTTTTCTAGTTAAAACTTTTG TAGGATGTATAATGATTATGACATTCTATCTTCTCAAATCAGTATAATGGTCCCTAACTCCATATTGCTCTAGAATTTTA TTGATTGCTTTTGTTATTTTTGCAGTACTATTCTTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATGC AATATACTTCACCAAATTGCCTATAGTGAAATATTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCTG ACCTAGCTGCTGCTGGCATTCAAACACAGACTAATGAAGTAACATAAATATGCAAGAACATAAATACATTACTCCTACAT GTAATATCTTTATTATGTTCTAAAAAATTGGAATTTTTGTAGGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAA CAAACAGTTGTTTCTTGAGAACCTTGATTATGCAGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTG GGTTCTTGTATGAAAACACTGGGTCACATCAGCTAGGCACATGGTAAGTGCTTATTTATGCTTTGTCTTCTCAATTCAAC TGTCTTGTGACATTACATGATATACATCATTTTAATTTGTTTTGTTAACGTAATTTAATTATAATGTTTACATGATATAC CTGACCATGGCCTTCAGAAAAAAATTTACTAGGTCCTTTGATATGTGTTTTCTGTTATGTTCCTTTGATGACTGATGAAA TTGATTGGGAAACATAAGTTTATATGTTGTTACTATTTATCTTTTTAGGTACCCAATTGTTTTGATTGCTATGTATAATG TTGTGGATTTCATAGCAAGATACATTCCCCTTGTGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTAATAGCAATC CTGTCTCGATTCTTGCTGATTCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTCCTCACCTC CTTCTTGGGACTTACCAATGGCTATCTAACTGTATGTGTTCTTACCGTGGCACCAAGAGGTTACAAGGCAAGTGTACACA ACCCACAATTCATAAGTACATGGATCTTAAACTAATGGGTTTTGTCCACTTACATTAGTTATTTACTTAATGGTGAAACT AGGACTGAAAAGATATTAATGATCATTTTTTCTCATTTTCATCATTAAAATAGTTTGTTCAATTGATTTACATGTCATGA GTTAACTCTAAATTATGAACTAATTTTATATTTTGTGTTGTTGCAGTCTCCTGAGCAGAATGCTTTGGGCAATTTGCTTG TGGCGTGTCTTTTAAGTGGCATATTTGTTGGGGTTTGTCTTGACTGGTTATGGCTCATAGGTAAAGGATCATTCTAA
CDS sequence (LotjaGi6g1v0341200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCATGTTTACTACAAATGGCAGTGGAGCAACAAGAAAGCCTGAGGGAAAGTACAAAGCAATGGTAGTTTGTTTCAT TCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATAGCAGATTACTATTACAAATTGTTCCCCAAATATC ATCCTTCAAGGGTACTAACCCTGGTTTATCAACCATTTGCACTTGTAACAATGTTAATACTGGCATATTATGAGTCAAGG ATCAATACTAGAATGCGGAATTTGGCTGGATTCACACTTTTCTTTGCTAGCACTTTCTTGGTTCTTGTTTTGGACCTAGC AACATCAGGGAAAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTGCTTGTTTTGGAATAGCAGATGCTCATG TGGAAGGTGGCATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAGTCCTACCTTGCTGGTTTGGCAGCATCA GGGGCTCTAACTTCTCTTCTGAGAATTCTGACCAAGTTAGCTTTTGAGAAATCTCATAATGGACTTCGCAAGGGAGCTAT ACTATTCTTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATGCAATATACTTCACCAAATTGCCTATAG TGAAATATTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCTGACCTAGCTGCTGCTGGCATTCAAACA CAGACTAATGAAGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAACAAACAGTTGTTTCTTGAGAACCTTGATTA TGCAGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTGGGTTCTTGTACCCAATTGTTTTGATTGCTA TGTATAATGTTGTGGATTTCATAGCAAGATACATTCCCCTTGTGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTA ATAGCAATCCTGTCTCGATTCTTGCTGATTCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCT CCTCACCTCCTTCTTGGGACTTACCAATGGCTATCTAACTTCTCCTGAGCAGAATGCTTTGGGCAATTTGCTTGTGGCGT GTCTTTTAAGTGGCATATTTGTTGGGGTTTGTCTTGACTGGTTATGGCTCATAGGTAAAGGATCATTCTAA
Protein sequence (LotjaGi6g1v0341200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMFTTNGSGATRKPEGKYKAMVVCFILGLGSLVSWNSMLTIADYYYKLFPKYHPSRVLTLVYQPFALVTMLILAYYESR INTRMRNLAGFTLFFASTFLVLVLDLATSGKGGIEPYIGICVLAACFGIADAHVEGGMIGDLYFMCPEFIQSYLAGLAAS GALTSLLRILTKLAFEKSHNGLRKGAILFFAISTLIEFLCIILYAIYFTKLPIVKYYRSKAASEGSKTVSADLAAAGIQT QTNEGGYDNKQEERLSNKQLFLENLDYAAGIFLIYVATLSIFPGFLYPIVLIAMYNVVDFIARYIPLVQSLKLESRKGLL IAILSRFLLIPAFYFTAKYGDQGWMILLTSFLGLTNGYLTSPEQNALGNLLVACLLSGIFVGVCLDWLWLIGKGSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 7 | 393 | 387 | 1.6E-198 | ||
| PANTHER | 7 | 393 | 387 | 1.6E-198 | – | |
| PIRSF | 9 | 393 | 385 | 3.4E-62 | ||
| Phobius | 21 | 46 | 26 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 47 | 57 | 11 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| TMHMM | 58 | 77 | 20 | - | – | |
| Phobius | 77 | 87 | 11 | - | – | |
| Phobius | 88 | 108 | 21 | - | – | |
| TMHMM | 90 | 109 | 20 | - | – | |
| Phobius | 109 | 113 | 5 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 114 | 132 | 19 | - | – | |
| Pfam | 127 | 361 | 235 | 8.1E-22 | ||
| Phobius | 133 | 152 | 20 | - | – | |
| TMHMM | 149 | 171 | 23 | - | – | |
| Phobius | 153 | 175 | 23 | - | – | |
| Phobius | 176 | 186 | 11 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 187 | 208 | 22 | - | – | |
| Phobius | 209 | 259 | 51 | - | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 260 | 279 | 20 | - | – | |
| Phobius | 280 | 284 | 5 | - | – | |
| Phobius | 285 | 306 | 22 | - | – | |
| TMHMM | 286 | 305 | 20 | - | – | |
| Phobius | 307 | 317 | 11 | - | – | |
| TMHMM | 318 | 337 | 20 | - | – | |
| Phobius | 318 | 337 | 20 | - | – | |
| Phobius | 338 | 342 | 5 | - | – | |
| TMHMM | 342 | 360 | 19 | - | – | |
| Phobius | 343 | 359 | 17 | - | – | |
| Phobius | 360 | 365 | 6 | - | – | |
| Phobius | 366 | 390 | 25 | - | – | |
| TMHMM | 367 | 389 | 23 | - | – | |
| Phobius | 391 | 396 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi6g1v0341200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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