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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0341200 |
| Transcript ID | LotjaGi6g1v0341200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Equilibrative nucleoside transporter family protein; TAIR: AT4G05120.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3; TrEMBL-Plants: tr|A0A072V578|A0A072V578_MEDTR Equilibrative nucleoside transporter 6; Found in the gene: LotjaGi6g1v0341200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:65497562..65500021) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAGTTTGTTTCATTCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATAGCAGATTACTATTACAA ATTGTTCCCCGTAAGTAAGTCACGGTGCTTTTAGTTTCTTTTATAAGACTTGACATCATCCTACAAAGATTGATTCTTAG GAATAAGTGCAATTCAGTAACTGATTAGAAGCTTTCTTTTCATTTGAAGAAATATCATCCTTCAAGGGTACTAACCCTGG TTTATCAACCATTTGCACTTGTAACAATGTTAATACTGGCATATTATGAGTCAAGGATCAATACTAGAATGCGGAATTTG GCTGGATTCACACTTTTCTTTGCTAGCACTTTCTTGGTTCTTGTTGTAAGTACACCATTTCAAATTCCATAATTTGCATT ATCTGATTTTCTTAAATTCATGTATGACCTATTTTCTTTGGCTTATATGGAGCTTGAACAATCTGTCGTGACAGTTGGAC CTAGCAACATCAGGGAAAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTGCTTGTTTTGGAATAGCAGATGC TCATGTGGAAGGTGGCATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAGGTTGGTCTTTCATTTAATTTAT TCAATATTTTAACATTACCCTTGTCAGTTATAATTCCTTCAAAAAATATATATATTTGGAGAAGGGGTTGCACTTGCTGC TATTTTTTTTGCCTAAATTGTTAAGTGTATGCAGTCCTACCTTGCTGGTTTGGCAGCATCAGGGGCTCTAACTTCTCTTC TGAGAATTCTGACCAAGTTAGCTTTTGAGAAATCTCATAATGGACTTCGCAAGGGAGCTAGTATGTTATTCTTCTTTTAC AATGCTCATATATATTGGTTTCTTATATTTGTCTTCTCTTGATGAATTGATTTTGTTTGAGATAGTGTATGTTTGGGAAT GAGTCTGGTCACCACGTTTTCTATCCAGATCCACGTCTAGCGGAAGCAAATAATATGTACAGTTTGCCCCAACGTGCATT GGATGATTGGAGTGTGTGCATGACTCATTTCCAAACATAGTTGTTTTCTAGTTAAAACTTTTGTAGGATGTATAATGATT ATGACATTCTATCTTCTCAAATCAGTATAATGGTCCCTAACTCCATATTGCTCTAGAATTTTATTGATTGCTTTTGTTAT TTTTGCAGTACTATTCTTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATGCAATATACTTCACCAAAT TGCCTATAGTGAAATATTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCTGACCTAGCTGCTGCTGGC ATTCAAACACAGACTAATGAAGTAACATAAATATGCAAGAACATAAATACATTACTCCTACATGTAATATCTTTATTATG TTCTAAAAAATTGGAATTTTTGTAGGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAACAAACAGTTGTTTCTTG AGAACCTTGATTATGCAGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTGGGTTCTTGTATGAAAAC ACTGGGTCACATCAGCTAGGCACATGGTAAGTGCTTATTTATGCTTTGTCTTCTCAATTCAACTGTCTTGTGACATTACA TGATATACATCATTTTAATTTGTTTTGTTAACGTAATTTAATTATAATGTTTACATGATATACCTGACCATGGCCTTCAG AAAAAAATTTACTAGGTCCTTTGATATGTGTTTTCTGTTATGTTCCTTTGATGACTGATGAAATTGATTGGGAAACATAA GTTTATATGTTGTTACTATTTATCTTTTTAGGTACCCAATTGTTTTGATTGCTATGTATAATGTTGTGGATTTCATAGCA AGATACATTCCCCTTGTGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTAATAGCAATCCTGTCTCGATTCTTGCT GATTCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTCCTCACCTCCTTCTTGGGACTTACCA ATGGCTATCTAACTGTATGTGTTCTTACCGTGGCACCAAGAGGTTACAAGGCAAGTGTACACAACCCACAATTCATAAGT ACATGGATCTTAAACTAATGGGTTTTGTCCACTTACATTAGTTATTTACTTAATGGTGAAACTAGGACTGAAAAGATATT AATGATCATTTTTTCTCATTTTCATCATTAAAATAGTTTGTTCAATTGATTTACATGTCATGAGTTAACTCTAAATTATG AACTAATTTTATATTTTGTGTTGTTGCAGTCTCCTGAGCAGAATGCTTTGGGCAATTTGCTTGTGGCGTGTCTTTTAAGT GGCATATTTGTTGGGGTTTGTCTTGACTGGTTATGGCTCATAGGTAAAGGATCATTCTAA
CDS sequence (LotjaGi6g1v0341200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGTTTGTTTCATTCTTGGACTAGGATCCCTTGTTTCATGGAACAGCATGCTGACTATAGCAGATTACTATTACAA ATTGTTCCCCAAATATCATCCTTCAAGGGTACTAACCCTGGTTTATCAACCATTTGCACTTGTAACAATGTTAATACTGG CATATTATGAGTCAAGGATCAATACTAGAATGCGGAATTTGGCTGGATTCACACTTTTCTTTGCTAGCACTTTCTTGGTT CTTGTTTTGGACCTAGCAACATCAGGGAAAGGTGGAATTGAACCTTATATTGGTATATGTGTGCTAGCTGCTTGTTTTGG AATAGCAGATGCTCATGTGGAAGGTGGCATGATAGGAGACCTGTATTTTATGTGCCCTGAGTTTATCCAGTCCTACCTTG CTGGTTTGGCAGCATCAGGGGCTCTAACTTCTCTTCTGAGAATTCTGACCAAGTTAGCTTTTGAGAAATCTCATAATGGA CTTCGCAAGGGAGCTATACTATTCTTTGCAATCTCCACACTCATCGAGTTTCTTTGTATAATCCTATATGCAATATACTT CACCAAATTGCCTATAGTGAAATATTACCGTTCAAAAGCAGCCTCAGAGGGATCAAAAACAGTTTCAGCTGACCTAGCTG CTGCTGGCATTCAAACACAGACTAATGAAGGTGGATATGATAACAAACAAGAAGAACGGTTGAGCAACAAACAGTTGTTT CTTGAGAACCTTGATTATGCAGCTGGAATATTTCTTATATATGTAGCAACTCTGTCAATCTTCCCTGGGTTCTTGTATGA AAACACTGGGTCACATCAGCTAGGCACATGGTACCCAATTGTTTTGATTGCTATGTATAATGTTGTGGATTTCATAGCAA GATACATTCCCCTTGTGCAAAGTCTGAAGTTGGAATCCAGAAAGGGTCTACTAATAGCAATCCTGTCTCGATTCTTGCTG ATTCCAGCATTCTACTTTACAGCAAAATATGGTGACCAAGGATGGATGATCCTCCTCACCTCCTTCTTGGGACTTACCAA TGGCTATCTAACTGTATGTGTTCTTACCGTGGCACCAAGAGGTTACAAGTCTCCTGAGCAGAATGCTTTGGGCAATTTGC TTGTGGCGTGTCTTTTAAGTGGCATATTTGTTGGGGTTTGTCTTGACTGGTTATGGCTCATAGGTAAAGGATCATTCTAA
Protein sequence (LotjaGi6g1v0341200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVCFILGLGSLVSWNSMLTIADYYYKLFPKYHPSRVLTLVYQPFALVTMLILAYYESRINTRMRNLAGFTLFFASTFLV LVLDLATSGKGGIEPYIGICVLAACFGIADAHVEGGMIGDLYFMCPEFIQSYLAGLAASGALTSLLRILTKLAFEKSHNG LRKGAILFFAISTLIEFLCIILYAIYFTKLPIVKYYRSKAASEGSKTVSADLAAAGIQTQTNEGGYDNKQEERLSNKQLF LENLDYAAGIFLIYVATLSIFPGFLYENTGSHQLGTWYPIVLIAMYNVVDFIARYIPLVQSLKLESRKGLLIAILSRFLL IPAFYFTAKYGDQGWMILLTSFLGLTNGYLTVCVLTVAPRGYKSPEQNALGNLLVACLLSGIFVGVCLDWLWLIGKGSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 396 | 396 | 2.1E-80 | ||
| PANTHER | 1 | 396 | 396 | 2.5E-222 | ||
| PANTHER | 1 | 396 | 396 | 2.5E-222 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| TMHMM | 2 | 21 | 20 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Phobius | 23 | 37 | 15 | - | – | |
| TMHMM | 36 | 55 | 20 | - | – | |
| Phobius | 38 | 56 | 19 | - | – | |
| Phobius | 57 | 67 | 11 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 68 | 87 | 20 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| Pfam | 106 | 392 | 287 | 5.0E-33 | ||
| Phobius | 112 | 131 | 20 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 132 | 154 | 23 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 166 | 187 | 22 | - | – | |
| Phobius | 188 | 245 | 58 | - | – | |
| TMHMM | 239 | 261 | 23 | - | – | |
| Phobius | 246 | 265 | 20 | - | – | |
| Phobius | 266 | 276 | 11 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| Phobius | 277 | 297 | 21 | - | – | |
| Phobius | 298 | 308 | 11 | - | – | |
| Phobius | 309 | 328 | 20 | - | – | |
| TMHMM | 310 | 327 | 18 | - | – | |
| Phobius | 329 | 333 | 5 | - | – | |
| Phobius | 334 | 358 | 25 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 359 | 369 | 11 | - | – | |
| Phobius | 370 | 393 | 24 | - | – | |
| TMHMM | 372 | 394 | 23 | - | – | |
| Phobius | 394 | 399 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi6g1v0341200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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