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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0364900 |
| Transcript ID | LotjaGi6g1v0364900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT1G09660.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660/At1g09670; TrEMBL-Plants: tr|V7BU65|V7BU65_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0364900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67695410..67701398) extracted from Lotus japonicus Gifu genome v1.2.
GGTTAAAAAAACAGCATGTACTATATAGTATACACACGTGACGCATGTTACTATTGCTTCTGTGGTGTGGTGGGGAAAAA ACCAGCAACACACAACGTAAAGCCGTAAAGGAAAGGAAATAGTAACGCGGTGAAAGTAGATTTTGGTGTGCGAGTGAGAG TGAATATAAAGACTGAGGCGCACACACATTAACCTTCTCTCTTTCTCGAAATCCTTCTCTTCTCTTCTTCTGTGGTAGAG GAACCAGAAGGGCTTTGCGTTGTGCCTCCCTCACCCTCACAACTGTAAGTCTTCTCCTTCCCCTCTTCTCTCATGTTTTC CGCAATGCGCCACTCACTCACTCACATAGTCTCCGTTTTTATTGACTTAATTCTCTTCTCTCTAACATTAACATATTACA TATGCTTTGCTTTGCTTTCTTCGTTCGTTCATGCATCTGGCTACAATAAATACCTACAATACAACCTGAATACTGTTTAG GTCTACTACTGGCTGCATTTCTATTCTATACATCTGGATTCTAACTAGGTTTTATTTTCTTTACAAATTGGCGGGCGGCA CAACAGAGCAGAGTAGATAGAGCAGATGGGAGAGAGGATCCCATCTGGGACTTATTTCCAGTTCCCTCCTCCCGGACCCG GACTTCCTCCATCGCCTATTAGGTCCTCCTCTATTCCTTCAGATCGCGAAAGGTCCTCCCTCACTCACTCACTCACCTTT TTAATCATTTATTTTTAATTTTCTGCCTTCAATTAATCACTCCCCTTGTTGCTAGTTGACAAAAATAAAGCGGGTTTTTC TTGTATACCTCCTGTGTGCATCTTTGTTTCGCATTTGGCATCGACCAATGCTATTTTATTTGTCACTTTTTATAAAGAGG TGGCTGGTACACTTGTTTTGATTCATGTCATCTCCAGGTTTGTGCCTTGCTACATCTGTTACTTATATGTTAATGTCTAG GTGATGTTACTGTTGAAAATAATTTGCAGATATTTGGCTGAATTATTGGCAGAGAGGCAAAAGTTGGGACCATTTGTGCA AGTTCTTCCACAATGTACCAGGCTCATAACTCAAGGTTTGTAAACCATCATCTATCTGTGCTTTTAACAATAGTTTCTTT GATTTCTGATCTTCGTAATTTGATGTTGTAGTGAACTTTATATATATATATATATATATAACAAAAAAAACCTTTTACTT TTTGAATTTTAGTTTGTATCAATTCTTTGCTACCAATCAGTGCTGGCAACTTGGGGAACAACTGTTCAAGGTTGTTGTTC AATCATCAATGTGGGGGACTCACTAGTCACAACTAGTTCCACATAATATTAATAATTATCAGACAATATCGATGTCATTT TAAGAACAATAAGAACATATACGTAAGAAAATATGAATGATTAGAATAATTTAGATTAGATGCCTGTTTGCTAGACTTGT TAATCCTGATTTTTCATGTCCTCTTGGTGCTCGAGATCATGTAACGGTTTTTCTGTAGTGCCATTTTTTGTCATACCTTC ACTATGTAGATTTGGTGGCTTTCTTTAGAGAGACCTACCCACACCACTTCCACTCTTGTATTCTTTAAAGATTTTGTAGT TTTTCTCAATTTCAACTGTGGCTTTGCAGAAATCAGACGGATAACGGGCTTTAACCAAGGTTTCATTGAACATGATAGAC CTGAGTCAGACAGTCCGTTTAGGTCCTTAAGTCAACATCCAAATAGTAGGCCAATGGATTTGGAGGGATGGCCTGCTGTA CCAATTGAGGTAATGCTACTTCATACCTATCTCTAGGACCTGTACAATAGTTCTTGAATTTTAAAATCATTTCATATTTA TTGATCATCACGTGCATCTACTTTGGTGTCTATTGTCCTTTCTAAACAAAAATTTATTGGAAAAATAGACATGTGGCAAT TTCAGCTGTGATGTGTGCATGATGAACTTTAAAAAATTTATCCAACATATCATATTCCAGTTGGGGAAGTTTCTGTTTGT TTGAGCTATTGGCTTAATGATTTCATAATTGCATAAACATGTATATATCTGCAGTTGTCTCTCTCTCTCTGTCACCACCT TGCATGATTTGTGCATTTTGTTTTCCATTTCTCGTGTAGAGAAATATGCAAGCATAAAATTAGCATTTTTATCAGTTTCA ACTTTAACTAGAGAGTCCTATAATTTAAAAAAGATATCTAGTGAGAAACAGCTATCAGATGAAGTTGTTTATTGGCATGG CTAATTCATTTCTGAAATTTTGCAAACTGGAAGTAAGACACATACCTGTGCAATAATTCTTCTTGCCTGGTGCTAACATG ATGCCATTATTGGGGAAAGAAGATAAAATCAGCATTTTGTGAGCTCTCTCATCCGCCTTCCTCTCCCGGGAAGTCCTGTG GTATTTTCCACTCAGAAGGGATATTCCTTCTTTGCCAATCAGATATTGGCTCACAGAATTCGGCAAAAGATTATATCCAC CTGCACATTTTAAATGATACTTTGCTACATAGTGACATAGTGTTGCAGGTCTTCAAAGGGTTTGTATGAGAAACATTCAT TTATTGGAATGCAGAGTGTAAGTTCTTTTTGAGAATATTTCATCACTGAAAATATCCAGGTTAAATGGCAGTTTGGTGCA TTACACATAGAAGAATTAGGAATTTAGCACTTTGATTGACATTTTTAAAATGTTGATTTTAGTTTTTAGCTTTTAAAAAT GCTTTTATATACCCCCTTAATCTTCCTTGGACCAGTCTGTGTACGTCATATATCTTAATCTTCCTTGGACCAGTCTATGT GCTTGCCAACCAGCTCCTTAACTTTATTAGGGAAAATTCACTGTACCTGTTTGTTGCTAGCTTTTGGTTCTCTGGAGTGT TAAAATCATAGAGGCCTTAGAATACACATCAAATGAATAAGTGCTCATAAATGGTCACTATACAAATTTTAACAATTCTT TTTTACAAAACTGTGAGAAAACTTGGGGGCAAGTGAGTTTTGCTTGCTATCACAACTTGTGTTTGTAAAGGGGGAGTTCT AAACAATACCAAATTTCTTCATGCAGGACAATGGAAATCTGCAAAGAATAGCATCATTTCAAGCACCGCCTATGGGTTGG CCTGGGACACAAGGAGTTCCGACGACACCTGTAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTAGAGAAATATCCAAA TGTAAGTAAAATAACATGTTATTTAACTACAGTTTATATCCTTTTTTTTCCTTTCAATGTATTTGACTTCAACCTCAGCA GTATAATTTTGTTGGCCGAATTTTGGGACCTCGCGGGAACTCATTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTT ATATCAGAGGCTGTGGCTCTGTGAAGGATTCTATTAAGGTAAGTTGGTTTGTAAGTATGCGCTATGAAGAATTATGTAGA GCTAATATGACTTCTTTTTTTAAATCATAGTTATTAGTAACTTTACTATAGATGTAGGAAAAGCTTTTCCATAATTATTA GTAATTTCATCCCAGAACACACTACTCATTATCCCACTACACTTAAGCTCAAGGCAGTTGTTGTCCAACTCGAGTGGTTG CTTCCTTCACCTTTTTGTCTTACCCCCTCCCTCATTTTTATGCAATTACTAAGAATATCTGTTTGGAGTTCTCATACAAG TAAGACCCCCACACCACATGTCATTTTTCATGTTGTGTTTCAACTTCCCTTTTTTAAATGTAGGAAGAGAAGCTTAAAGA TAAACCTGGATATGAGCACCTTAATGAACCATTGCATGTGTTGGTGGAGGCAGAATTTCCAGAGGATATAATCAATTCTC GCTTGGATCATGCGGTGGCGATACTAGAAAATCTTTTGAAGCCTGTGGTATGGATATATTGTTATAGTGAATTGCGTAAC TGTGTGCCTCTCTCTATCTCTCTCTCTCTTTCTTAATCTTTGTTAATTTGGCTGCAGGATGAATCACTTGACCATTATAA GAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGAGGAAAGTCCAAGCATGAGCCCGAGTATGAGTC CAAGCTTGTCACCATTTAACAGTACTGGAATGAAACGAGCCAAGACAGGAAGATGACCCTAATATGCTTGTTTACAATTG GACCATACATTTTTTTCAAGCTCTTAGAATTTGGAGGTGGCCTTTTCACTCCATAAACTCTGTCGGGCTTGAATCTCCTT GAGCACCTTGCAAGGATGACTGATGGTTCTCTGACGGCTATTCTTTGGTGTATTAACCGCCACAACATTGACAGTCATTT TGTTGAAGTTATAGTATTAACTAATTTGCAGGTGCTACTTAGTAGCATACTCCTAGTTTGATTATTTTTTTCATTTGATT TTGCATTTGTCTAATTAAGTTACATGCGTATGTCATATATGCATGGTATTGGATTTTAAGCTAAATAAAACATGTGGAGT GGCTTTGATTATTATATTGTGACCTGAATATTTTTGGCATCATTATTCAATAATTGTCAATTCGTATTTTGAGCTTGCAA GTGATTTTGATTAGATTTATGCAGTGATATTTGAACTTGAACAAGTGCTTTCTTTATGATAAACAGCCATAACGGCAACG TATGGTATGGCTCCTGATTTTATCTTTCATTATTTGGGCAATGCAGTGGGAATGAAGGATATGGAGGCCTTGTCCTGCCT CTAATATCCTAAAGACTGGCTAATATAGCTTTTTGTTCATGCGTCACACGAGTGATTTTATCCAAAAAGGTTCAAGACAA TAAACATGTATAATTACTATGAAATATTCCATTGCTTGACTTGAAATTGAGATGGACTTATGATGCTGTTTTGACAATAG ATTATGAATGCAAACCCGAAAACAAACATAGAGATGGTGTTCATGTCATGTTATTTTAGAAAGCAAATGCCCTCAAAATA GAACAGAGATCACTCATCCATGGATGTCAAGTCTCAGAGATAGATAGATTTGTGAGAAAGAAAACATGTTTAATATTGTA GGATTTGATTACAAACAATGAATTGAGGTTGTAGTCTGTCCCTATCCTAATGGAGTGAGTTAGTCCCTTAGGCCGAGCTC AAGCTCCAAGTCATCATCCTCTTCAAACAACTTCAAAAGACGAGCATATTGCTCTTCCCTTCTCTTCTTCCGCCACCACT TAAAAAGCATAAAAGACAAGACACAGAGCAGCACCGCCACAATTAAGATAATCAAAATAATCATAGAAGAAGAAGAAGAA CCAGTATGAGTAGTGCTGTTGCTGGCAATGGCATCATCAAGTTTAGAGTCATCAGAAAAACCTGAAGAAAAAATAAAGAT ATTAGCCAGATCGCTAGCGAGGGACGGAGGAAGATGAAGATGAAATAGGCATAGATTGGATTTGTAATAAGACAAGAGAC AGAATTAAGTTGATAATTTTTAAGCAAGAGAAACAGGAATGAATACGCATCGCATGAAATCGAAATCGAAATCAAAATCA AAATAAAATGAAGAAAAGCATTAAACATTGGAGATACGAACCGAGAATGAAATGCAAAGACAAGAAGACGAAACTCAGTG ATCTGCTTTGCCCTTTTCCACTCCTCATCTCCGATCGCATCGAATTCAAATCTGTGCGTGCGTGCGTGCGTCTTTTCCTC TGCATTTGGCTTCGGACCCCCTTTGCTTTACCTCCTCCGCCCAATATCATATAACTAAGTTATTACTCCCTCCGTTCCTG ATCTTTTGTTGTTTAAGGTTCTGCACATTGTTTAAGAGTGCAATCATTGATATATTTGTTGACATAAACATCCCTATTTA ATGTAGAGTTAAAGTGAAGAAAGAGAATTATAGTTATTGGTTTAGAAACTTGTTATGATTTTGATTGGTGAAAATAAGAG GTGGTAGGTGAGAGATATAGTATTAAATGAGGGTATATATGGAATAAATTGAGAAAAAATGCATTGGGT
CDS sequence (LotjaGi6g1v0364900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGAGGATCCCATCTGGGACTTATTTCCAGTTCCCTCCTCCCGGACCCGGACTTCCTCCATCGCCTATTAGGTC CTCCTCTATTCCTTCAGATCGCGAAAGATATTTGGCTGAATTATTGGCAGAGAGGCAAAAGTTGGGACCATTTGTGCAAG TTCTTCCACAATGTACCAGGCTCATAACTCAAGAAATCAGACGGATAACGGGCTTTAACCAAGGTTTCATTGAACATGAT AGACCTGAGTCAGACAGTCCGTTTAGGTCCTTAAGTCAACATCCAAATAGTAGGCCAATGGATTTGGAGGGATGGCCTGC TGTACCAATTGAGGACAATGGAAATCTGCAAAGAATAGCATCATTTCAAGCACCGCCTATGGGTTGGCCTGGGACACAAG GAGTTCCGACGACACCTGTAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTAGAGAAATATCCAAATTATAATTTTGTT GGCCGAATTTTGGGACCTCGCGGGAACTCATTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTATATCAGAGGCTG TGGCTCTGTGAAGGATTCTATTAAGGAAGAGAAGCTTAAAGATAAACCTGGATATGAGCACCTTAATGAACCATTGCATG TGTTGGTGGAGGCAGAATTTCCAGAGGATATAATCAATTCTCGCTTGGATCATGCGGTGGCGATACTAGAAAATCTTTTG AAGCCTGTGGATGAATCACTTGACCATTATAAGAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGA GGAAAGTCCAAGCATGAGCCCGAGTATGAGTCCAAGCTTGTCACCATTTAACAGTACTGGAATGAAACGAGCCAAGACAG GAAGATGA
Protein sequence (LotjaGi6g1v0364900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGERIPSGTYFQFPPPGPGLPPSPIRSSSIPSDRERYLAELLAERQKLGPFVQVLPQCTRLITQEIRRITGFNQGFIEHD RPESDSPFRSLSQHPNSRPMDLEGWPAVPIEDNGNLQRIASFQAPPMGWPGTQGVPTTPVVKRVIRLDVPVEKYPNYNFV GRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLL KPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSLSPFNSTGMKRAKTGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 11 | 25 | 15 | - | – | |
| PANTHER | 24 | 295 | 272 | 4.5E-124 | – | |
| PANTHER | 24 | 295 | 272 | 4.5E-124 | – | |
| Pfam | 34 | 69 | 36 | 6.0E-7 | ||
| MobiDBLite | 77 | 98 | 22 | - | – | |
| SMART | 141 | 237 | 97 | 8.7E-5 | ||
| CDD | 146 | 266 | 121 | 2.44959E-51 | – | |
| SUPERFAMILY | 147 | 266 | 120 | 4.14E-30 | ||
| MobiDBLite | 267 | 295 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0364900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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