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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0366300 |
| Transcript ID | LotjaGi6g1v0366300.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Found in the gene: LotjaGi6g1v0366300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67897839..67905076) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCAGGGATTAGAGCATCAAATGCCTTCCTTTAATCTGCCTTGTAAAATATTATGTAAAGTGGTCAATATTCATCT TCGGGTGAGTTATAATAATCTCAACAATCTTAGATACTTTTTTAAATCAGTCACTTATTTGGAAGTTTGCTGTGCTTTAC TATAATTGTCATTATATTGTTAACTTAATCTTGGTTGTGTAGGCTGAGCCTGAAACAGACGAAGTATATGCTCAGATAAC TTTGCTTCCTGAAACAGATGTGAGTGTTCTCTTATTCATTGTTTGACATAGTCGTTATCTTTAGACCTTTTCTGTTCGTT TTGATTTATCTCTCAATTCATTTCCTTATTTCCACTAGAGTTACATCGTTTATTACTCATTTGGTTTACCTTTGTTCCTC ATTTTATGCATGTCTTATTTTTCCGTGTCTTATTGGTTTAGCAAAGTGAGGTGGCAAGCCCAGACGAGCCTCTGCCTGAA CCTACAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCT TCGAAGACACGCGGATGATTGTCTGCCACCACTGGTTGGCACTGAGCAACTTTTTTGAGTTAAAAAGTCATTAGAGTTGC CTGATCATGCTTGTCTTTATTTGTATTTACACCTGATAATTCCCATGATTTGTTTAGGATATGACCCAGCAGCCACCATG GCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGTAGGTAGCTTGCTATCC CCCCTCCCCTTGTCGTAGAACCTAGTTCCTATCATGTGAACATGGTAAAGAATGTTTGCTTGATGAAAAAAATTGGATCA ATGAAGACCTTGTGGCAGTGTAGTTTTGAGTATTGTGTGTTTCTGCTGATTAAATATGCTGAGCTAGAACCATCCACACT GCTCGTGGAACACATGACATGTACAAGAAATTTTAGGACTGTCCTTGTAATGCCAAACATGCTTATTGGAAAAAGTTCAT ACGGACTTGTTTTGAAACTTTTCTTTCTAACAAAACAGAACTAGTCTCAAGTTTTAATGTTTTGGGTTTCGTTCAGTTAG CCATTTTAACTTTTCAGCGCATGCACTCTGCTATTATGTTGTTGACTTGTGAAAAATAATACCAGTTTTTGATGTTCATT CTGTCATCAAGTTCCTGACTTCACTGAGTGATTTACAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCT TTGTCAGTTCAAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGCAAGTTTGTTTAGTAGAAGTTTTATTATAA TACCTTCCTCCAGGGACAACAAAAAATACTTTGCATTTTTAAATTGCTTTCGTTTCTTAATTAACTGTGGTTGGTTTTAA TTGCATGTAATATTCTAGGGGTGAAAATGGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGC CATCTTCTGTTATTTCCAGTCACAGTATGCATCTTGGTGTTTTGGCCACAGCATCTCATGCCATTGCCACTGGCACATTG TTTTCTGTATTTTACAAGCCCAGGTCTTGTATCTAACACTGAATTTATTATTAGTTGTCCAATATTTAATATTTAGTTCC TGATATTGGTGTTGCCAACTTGTCATATTTTGCTAGTGATTAGTAACTTTAACTAACATAGATAATTGTATTTTCACCCC TAAATCCTGTCCTTGTCTCTGTCTACTTTCATGCAATACAATAACAATTTTAGCCTCTTCCCATTACGTGGGTCGATTAC ATAGATCAAAAGACATCATAATGTCCTAAAAAGACTTAAATTCACAGATAAAAAGTAAATTTTGTTTTAAAATCCCTCCC TTCCCCTCATGTACCAAACCAGGAGAGGGTTATTTCCCCTCCTCTCCTCTTAAACAAACATAATAAAGATTAAAATCCCT CCCCTCCTCTCATTTGAACCAAACACAGTGTAAGTCGACCCTTGGTTCAACCCTATAGTTATAGAGAATTCTTCTTCAAC CTTGTCTTCTCATGCTAGTGGTGGCCCCTTTATAAATATTTTTATTGCTTCAATTTAAGCAATTTGAACTCTTTTTTTCT CTCTAGACCCTAGATCTTTTGGACTCCTCTAATATCTCTCCATAAGCCTTCATAGCAAGCATATAGTTTTCATGGTCGAC TTGGTAACATATGATTTTTTTTTTGTGATAGGATTCCTGTTTGAATCTCTGCTTAATTACTCTTGCCTAAACTTCATAGT ATGAGCTATGAGATTAATCTCCCTATAAATTGTGCTGTTATGTATGTTCTTATCCTCCACTCCTTTCAAGCAATTAAAGA ACTGTTCTGTTTGGATGAATAATTTGATTGGGACGATATTTGAGTTTGCTTTGATTGCTTGGTTAGTTTAAGATTTCTGC TGACTTATCAATATCTGTCTTAGAACAAGCCGGTCAGAGTTTATTGTGAGCGTCAATAAGTATCTTGAAGCTCGAAATCA TAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTCGAGGGTGAAGAAGTTCCTGAAAGAAGGTGCGTCAACTGGTTGT TTGTAAATTGATGTTCTGACTTTAGCTCATTGTTCAATCTATTAAATGTTCCTCAACCCCTGAATACAGGTTCAGTGGTA CAATTGTGGGTGTTGAATATAATAATTCATCTGTCTGGGCTGATTCCGAGTGGCGATCATTAAAGGTTAGTTTTCATGTT TAGTTACACTGCCAGTGTCTATTTTTGTAGTTTGTATTCAGTAGCATTCAGTTAATTTTACAATTTCACAAATATGCCCA TTTTAGTTTTAGGAAAAACTACCGAAATGTAGATTCTATTCTTGCATCTCTTTAAATTGGTCAAGAAAGGTCACTCTCCA TGATGCTTTGGTTGTGTTTCCTTAGATGGTTGGAAACTCAGCTTCAGCTATGCATGTATTAACTAGCTATAACGAGAGAT GTCATAAAAAAATAGCTGCGAGAAAATGATATTTTTTATACATGATAAAATACAGAAAGCGTCATGCTTACACTTCTAGT GCTATGATTTGAAATTTACATTGCAGCTTTTGGTTCATTAATCCTTTGATCTCTAACGGATCTCAGGTACAATGGGATGA ACCATCATCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCGAACTCCC AGCCAACCCCAAGAAACAAGAGATCACGGCCTCCCGTTCTACCTTCGACAATTCCAGATTCTTCTCAAGGTGGCTTGATC ATTTGTAATTTCTCTATATATGTTATCCATGCTGCTTTTCTACATTATTTCTTTTTCTGTGTCAGGCGTATGGAAATCAC CAGTTGATTCTCCACCTTTCTCTTATCGTGACCCTCAACATGGACGAGACCTCTATGCATCACCCAAATTCAATTCTACT GCAACTAGCTTTTTTTGTTTTGGTGGGAATAACTCTGCTTCCAACAAGTCAACATATTGGTCTACTAGGATGGAAAACTC AACAGAAACTTTTTCACCTATAGCTCTTAAAGAATCTGGAGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTG GGATTCAGCTACTTGAGAATTCTAATGCAGAAGAAAGTTTGCCAACAGTCACTTTGTCAGGAAGGTTGGGTGATGACCAG TCCATTCCATCTTTGGATGCTGGGTCTGACCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCAGTAAG TTGTGACGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATACGAAGCTGCACCAAGGTAGCAT AACTGTTTTTTATTTTGGTGTGGTGCACTCTGCACCCCCTTCCTATTTTGCATTTACAGAGTCATGCAGCATTCTTGTTA TATTTTTCCTGTGTATTAATTTAGTGCACTGTATTGCAGTTATATGATGCATCTTCATTTTACAGAATTGCAGATGATTT TTAGCTCCTGATGACGTATTTAGAATCTATCTTCATTATTGACAGCATTTTATCCATAATGGCATAATCAGTGAATTTAA CTGTTGAGATCCAACATTTGGTTAGGGATATGGGCTACGGCCAAAGCAAAGCTTATAAAAGGATTGGGCAATCCCCATCT CATGAGCTAGCTTTTGAGGTTGAGTTAGGCCTAGCCCAAATTTAAGATGGTATAGAGCCTATCCTAGATCTGGTATTCGG TCACCTACTGTCTAGAAATCTACCTGGCCCCATGGCTTACCTAGTGCAATATAAAAAGCAGTTCTATAATCTGCATGTTC TAGATGTCCAATCATGAGTATGTGGGGTGTGTTGAAAGTAGAGCTTATAGAAGTTTCGGGAATTATAACTTATGAGCTAG CTATTGGAGTTGAGCTAGAGCGAGCCCAAATTCAAGATAACATAAAAATGGATAGGATGGCAATTACCACCTGCAGATCT TGGGGATAATTTCCCCATGGGGATGGGGACGAAAATCCCCTTGGGACAAATTTGGGGACGGGGTAGGGATCAGTCTCCTT GCCCCGCAGGGTCCCCACCTCATATATATAAATGAAAATACAATAATACCCTTGATAAAAAAAATTAAATTGCTAATAAA TAAATACAAAATTATAAAAGGCCCTAAACACAGCCCACTATGAAAAAGCTAGAAAACTAATTTCAATAAAAAATCTTAGC TTGAGATAAAATTTAGATTGCTTATAATGAAGACTTCACTTTTTTGGATGAGTTGAATGTTTAAGGGTGTGTTTTGAGTG TTACACTTCAGATTTCGATCGATATAATGTTGGTCTTTACTTTTCAAATTTCTTATTTTGTAGATTTCACATATTTTGTG ATGAACTTCAATTAATGTTATTTGAAGTTTATTATTTATTTGTATTGCATTTCATGTGGTTGCGTTGACAGTTATGGTTT TTTTATTGCATAAATTTATGTATTTTCTATATATTTTTAAAAAAATTAATGACGTGTTGGATCCCCGTGGGAAACAGGGT TGGATCCCCGTGGGAAATGGGGATAAGGGAAAAATTCACCCCGCCATAGGGATGGGGGCGGATGAGAGAATCGGGGACGG GGAGCGTTGAAGCACTCCTGCCTGCCCCGCCTTATTGCCATAGGAAGTTTGATAGGAATAAGATATGTTAAGGGGGTGTT GTTATTTTTACTAGTTGATAGTTAGTAGAATGGTTAATCAGTTCAACAGAGTTACGATCAGTTTAAGGGAGTGAGAGATC GAGCGAGGAGAGGCTATAAATAGGAGGGAAAGGGGATAGATAGGGTATCTAGATTGTAATTAGAGTTTTTTGGGCAGAGT TGTGGTCTCTCAAATACTGGGGACTTTGTGTAGTTTTTTTGTTAGAAGTCCCACATTGGTTAGAGATATGACATAGATAG CTTTTATAAAGGGTAGAGCAACCCTCAACTCTACAGCTAGCTTTGTGGGTTGAGTTAGGCCTCCCAAATACTAATATGGC ATCAGAGCCTATCCTAGATCCATTTGTTGGTGGAGAGTTCCCATATTTGGGTCGCCCCGCAGATGTCCCGTTCCCGTCTT GCATATTCCACGCTCTAGATGTCCAGCGCTGGGCGTGAGGGAGTGTGATAGAAGTCTCACATTGGCTAAAGATGACATAG ATAGCCTTTATAAAGGTTAGAACAACCCTCTACTCTAGAGCTAGCTTTTGGGTTAAGTTAGGCCTCCCAAATTCTAGTAA GTTTCATAGCATTCTTCCAATCAAATAGAGTCTTTCTTTGTTGTTCATTGCTGGTACCTATCAAAGTTCCAATATTTGTT ATCCCAGCATTGTTATGCACAATATAAGTTCCAGCATTTTTCCATGCTCCAGACCAGGGTCTTTATCAAACAACTTATCT GGAATAAAATCATTCAACACCCAATTTGAGAAATTATTCTGTATTCATTTTTTTTGTTTTCACTGATATTTACTATTGGA AATATAATATTGAACTATTCATGTGTGAGCTTAAGCTTTTGGGAAGTTGGTTCATGACATAGTATCAAGTTCTTTATGAC CAAGTGATTTAGAGTTCGATCCTTGTTGCCTCCCATTATTTAATAAATAGTTGATTGTAGCACATGGTGTGTGGACCTGT GCACTATCTACGCTTTAAACTCAACGGGCTCGTGTGAGTGGGGTGTGTTGGAAATATAAAATTAAACCATTCATGTTTTT CACCCAATTGCTTAAGCTTTTGGGGAAGTTGGTTCATGACACTTACAAGTTACAAAGTGCCACATTATTTTCACTTTGTT TCATATTATTAAGGATTTCTACAAGAAACGGTGAGAATTTTATTTTTTGTTTCACATTTCTAGTAATAAATCTTTGACGA AGAACGAAGTGAAAATAAAATTATATTTATGTAATTATTAATCGAAGTAGGAGATGGAAACATAAAATATTTTCTCAAAC CAAATAAGCCTTCTATTAGCCGGTATAGTAGGTTTAAGAGGCCTTTACTTTCTTTATGTTTGGATAATTCCAATCAAATT TTTGCTGCTAACCTTGTTTTTTTGGACTAGGAAAGTGGCTTAGCATAATATTCTCTATTTCACCAGAGGGCAGTACCTGC AAATTGAAATGACATTATTTATGATGAGTTTAATATTGTTCCAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTG GACTTAACACAGTTTGATGGATATGAGGACCTGCTTAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGG TTCAGCAAAAAAATGGCAGGTTGTCTACACCGACAATGAAGATGATATGATGATGGTTGGAGATGATCCGTGGCTGTAAG ATCATTTCATACGAACATATCTAACTTGGACACTTCTTATTCGTCGCATAATATTTGAATTTTTATGTACATATATTTTA AAATCTGTCTTGCTATTTTACTGCAGTGAATTTTGTAGCGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAA GAAGCTTTCACCTAAAATAGGACTTCCCATGAATGATGAAGGTAAACCAAGCAAACTGGATTCAGAAGCCGTAGTCAATC CTGAGGACCAGTCGTCTGTTGTGGGGCCTAGTTGCTAA
CDS sequence (LotjaGi6g1v0366300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGGGATTAGAGCATCAAATGCCTTCCTTTAATCTGCCTTGTAAAATATTATGTAAAGTGGTCAATATTCATCT TCGGGCTGAGCCTGAAACAGACGAAGTATATGCTCAGATAACTTTGCTTCCTGAAACAGATCAAAGTGAGGTGGCAAGCC CAGACGAGCCTCTGCCTGAACCTACAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACT CACGGAGGTTTCTCTGTTCTTCGAAGACACGCGGATGATTGTCTGCCACCACTGGATATGACCCAGCAGCCACCATGGCA AGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCCAGGCGCCACTTAC TGACCACTGGGTGGAGTGTCTTTGTCAGTTCAAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAAT GGAGAGCTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATTTCCAGTCACAGTAT GCATCTTGGTGTTTTGGCCACAGCATCTCATGCCATTGCCACTGGCACATTGTTTTCTGTATTTTACAAGCCCAGAACAA GCCGGTCAGAGTTTATTGTGAGCGTCAATAAGTATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGAGATTCAAA ATGAGATTCGAGGGTGAAGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAATATAATAATTCATCTGT CTGGGCTGATTCCGAGTGGCGATCATTAAAGGTACAATGGGATGAACCATCATCAATTTTGCGTCCTGATAGAGTTTCTC CATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTGCGAACTCCCAGCCAACCCCAAGAAACAAGAGATCACGGCCTCCC GTTCTACCTTCGACAATTCCAGATTCTTCTCAAGGCGTATGGAAATCACCAGTTGATTCTCCACCTTTCTCTTATCGTGA CCCTCAACATGGACGAGACCTCTATGCATCACCCAAATTCAATTCTACTGCAACTAGCTTTTTTTGTTTTGGTGGGAATA ACTCTGCTTCCAACAAGTCAACATATTGGTCTACTAGGATGGAAAACTCAACAGAAACTTTTTCACCTATAGCTCTTAAA GAATCTGGAGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCTAATGCAGA AGAAAGTTTGCCAACAGTCACTTTGTCAGGAAGGTTGGGTGATGACCAGTCCATTCCATCTTTGGATGCTGGGTCTGACC AGCATTCTGAACCATCAAATGTTAATCGATCTGATATCCCTTCAGTAAGTTGTGACGCTGAAAAATCATGCCTGCGGTCT CCCCAGGAGTCACAAAGCAGGCAAATACGAAGCTGCACCAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGA CTTAACACAGTTTGATGGATATGAGGACCTGCTTAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGTT CAGCAAAAAAATGGCAGGTTGTCTACACCGACAATGAAGATGATATGATGATGGTTGGAGATGATCCGTGGCTTGAATTT TGTAGCGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCTAAAATAGGACTTCCCATGAA TGATGAAGGTAAACCAAGCAAACTGGATTCAGAAGCCGTAGTCAATCCTGAGGACCAGTCGTCTGTTGTGGGGCCTAGTT GCTAA
Protein sequence (LotjaGi6g1v0366300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQGLEHQMPSFNLPCKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVASPDEPLPEPTRCTVHSFCKTLTASDTST HGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGEN GELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFK MRFEGEEVPERRFSGTIVGVEYNNSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTPRNKRSRPP VLPSTIPDSSQGVWKSPVDSPPFSYRDPQHGRDLYASPKFNSTATSFFCFGGNNSASNKSTYWSTRMENSTETFSPIALK ESGEKRQGTGNGCRLFGIQLLENSNAEESLPTVTLSGRLGDDQSIPSLDAGSDQHSEPSNVNRSDIPSVSCDAEKSCLRS PQESQSRQIRSCTKVHMQGMAVGRAVDLTQFDGYEDLLRKLEEMFDIKGELCGSAKKWQVVYTDNEDDMMMVGDDPWLEF CSVVRKIFIYTAEEVKKLSPKIGLPMNDEGKPSKLDSEAVVNPEDQSSVVGPSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 582 | 580 | 2.5E-290 | – | |
| PANTHER | 3 | 582 | 580 | 2.5E-290 | – | |
| SUPERFAMILY | 59 | 198 | 140 | 9.55E-44 | ||
| Gene3D | 66 | 171 | 106 | 6.1E-45 | ||
| CDD | 67 | 169 | 103 | 1.83281E-21 | ||
| Pfam | 69 | 169 | 101 | 3.7E-20 | ||
| ProSiteProfiles | 69 | 171 | 103 | 11.251 | ||
| SMART | 69 | 171 | 103 | 1.2E-21 | ||
| Pfam | 195 | 277 | 83 | 9.0E-35 | ||
| Gene3D | 232 | 305 | 74 | 9.6E-33 | – | |
| MobiDBLite | 298 | 350 | 53 | - | – | |
| MobiDBLite | 323 | 337 | 15 | - | – | |
| MobiDBLite | 435 | 467 | 33 | - | – | |
| Gene3D | 485 | 579 | 95 | 2.0E-37 | – | |
| Pfam | 487 | 580 | 94 | 1.1E-11 | ||
| ProSiteProfiles | 490 | 583 | 94 | 26.102 | ||
| SUPERFAMILY | 492 | 567 | 76 | 4.32E-11 | – | |
| MobiDBLite | 582 | 614 | 33 | - | – | |
| MobiDBLite | 600 | 614 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi6g1v0366300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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