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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015300
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 384 results. Now displaying 1 of 8 with 50 rows per page. This search has taken 5.844s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0017909.1
n.a. hypothetical protein PRUPE_ppa026804mg [Prunus persica] gi|462412751|gb|EMJ17800.1| chr0 7023200 7023908 -
2 domain predictions
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Lj0g3v0022079.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 8910163 8916990 -
3 domain predictions
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Lj0g3v0022659.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 9136319 9142243 +
3 domain predictions
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Lj0g3v0024729.1
n.a. DNA-binding protein RTV1 [Arabidopsis thaliana] gi|18402653|ref|NP_564547.1| chr0 9852981 9853617 +
2 domain predictions
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Lj0g3v0074589.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356533163|ref|XP_003535137.1| chr0 28119620 28121010 -
2 domain predictions
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Lj0g3v0074849.1
n.a. PREDICTED: B3 domain-containing protein Os11g0197600-like [Vitis vinifera] gi|359480431|ref|XP_002269140.2| chr0 28331864 28333470 +
3 domain predictions
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Lj0g3v0086279.1
n.a. PREDICTED: B3 domain-containing protein Os11g0197600-like [Vitis vinifera] gi|359480431|ref|XP_002269140.2| chr0 34753078 34754202 -
3 domain predictions
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Lj0g3v0086659.1
n.a. B3 domain-containing protein REM20 [Medicago truncatula] gi|357511467|ref|XP_003626022.1| chr0 35006760 35007954 -
3 domain predictions
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Lj0g3v0098669.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] gi|502123720|ref|XP_004498232.1| chr0 41811315 41812029 -
3 domain predictions
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Lj0g3v0106389.1
n.a. PREDICTED: rap1 GTPase-activating protein 2 [Trichechus manatus latirostris] gi|471374460|ref|XP_004376310.1| chr0 45750867 45751692 +
3 domain predictions
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Lj0g3v0112049.1
n.a. PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Cicer arietinum] gi|502125889|ref|XP_004499104.1| chr0 48695881 48699225 -
3 domain predictions
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Lj0g3v0114559.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] gi|502123723|ref|XP_004498233.1| chr0 50231512 50234854 +
3 domain predictions
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Lj0g3v0131039.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357504749|ref|XP_003622663.1| chr0 59591926 59592977 -
3 domain predictions
 –
Lj0g3v0141269.1
n.a. PREDICTED: auxin response factor 18-like [Glycine max] gi|356542623|ref|XP_003539766.1| chr0 65017807 65021728 +
3 domain predictions
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Lj0g3v0154619.1
n.a. PREDICTED: lipopolysaccharide-responsive and beige-like anchor protein isoform X1 [Condylura cristata] gi|507955746|ref|XP_004685378.1| chr0 72440114 72440589 -
3 domain predictions
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Lj0g3v0164369.1
n.a. PREDICTED: B3 domain-containing protein Os01g0234100-like [Glycine max] gi|356495841|ref|XP_003516780.1| chr0 77856701 77857112 -
3 domain predictions
 –
Lj0g3v0174259.1
n.a. Transcriptional factor B3 [Medicago truncatula] gi|124360101|gb|ABN08117.1| chr0 83984982 83986568 +
3 domain predictions
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Lj0g3v0181669.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Cicer arietinum] gi|502123720|ref|XP_004498232.1| chr0 88679624 88681333 -
3 domain predictions
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Lj0g3v0187709.1
n.a. 60S ribosomal protein L7 [Medicago truncatula] gi|357444611|ref|XP_003592583.1| chr0 91558384 91562195 -
3 domain predictions
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Lj0g3v0204119.1
n.a. erbB3 [Takifugu rubripes] gi|3170544|gb|AAC34391.1| chr0 101237110 101238524 -
2 domain predictions
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Lj0g3v0243039.1
n.a. B3 domain-containing transcription factor VRN1 [Medicago truncatula] gi|357439319|ref|XP_003589936.1| chr0 126056585 126057284 +
3 domain predictions
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Lj0g3v0250259.1
n.a. PREDICTED: auxin response factor 9-like [Glycine max] gi|356504356|ref|XP_003520962.1| chr0 129736514 129740822 +
3 domain predictions
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Lj0g3v0250259.2
n.a. PREDICTED: auxin response factor 9-like [Glycine max] gi|356504356|ref|XP_003520962.1| chr0 129736766 129740822 +
3 domain predictions
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Lj0g3v0253159.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1| chr0 131434213 131437225 +
3 domain predictions
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Lj0g3v0258689.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357460331|ref|XP_003600447.1| chr0 134322620 134323814 +
3 domain predictions
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Lj0g3v0262269.1
n.a. Maturase K [Medicago truncatula] gi|358347636|ref|XP_003637862.1| chr0 135923191 135924012 +
3 domain predictions
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Lj0g3v0268049.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Vitis vinifera] gi|225428645|ref|XP_002281517.1| chr0 138804810 138805862 -
3 domain predictions
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Lj0g3v0277059.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356498158|ref|XP_003517920.1| chr0 143783408 143787831 +
3 domain predictions
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Lj0g3v0277059.2
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356498158|ref|XP_003517920.1| chr0 143783408 143787831 +
3 domain predictions
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Lj0g3v0277169.1
n.a. PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os12g0591400-like [Brachypodium distachyon] gi|357161806|ref|XP_003579209.1| chr0 143852136 143853860 +
3 domain predictions
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Lj0g3v0279519.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1| chr0 145090687 145092417 +
3 domain predictions
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Lj0g3v0282089.1
n.a. auxin response factor 3b [Lotus japonicus] gi|225030806|gb|ACN79516.1| chr0 146262839 146267187 +
3 domain predictions
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Lj0g3v0288879.1
n.a. B3 domain-containing protein [Aegilops tauschii] gi|475526140|gb|EMT07265.1| chr0 150082470 150084598 +
3 domain predictions
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Lj0g3v0288879.3
n.a. transcriptional factor B3 family protein [Arabidopsis thaliana] gi|30689117|ref|NP_194896.2| chr0 150082749 150084598 +
3 domain predictions
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Lj0g3v0288979.2
n.a. PREDICTED: auxin response factor 6-like [Glycine max] gi|356510873|ref|XP_003524158.1| chr0 150172454 150177224 +
3 domain predictions
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Lj0g3v0292139.1
n.a. PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 [Cicer arietinum] gi|502152906|ref|XP_004509147.1| chr0 151614899 151619555 +
3 domain predictions
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Lj0g3v0294169.1
n.a. B3 domain-containing protein [Aegilops tauschii] gi|475575893|gb|EMT17386.1| chr0 152867158 152867903 +
3 domain predictions
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Lj0g3v0297019.1
n.a. B3 domain-containing transcription factor VRN1 [Medicago truncatula] gi|357439319|ref|XP_003589936.1| chr0 154291752 154292597 -
3 domain predictions
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Lj0g3v0301059.1
n.a. PREDICTED: auxin response factor 4-like [Glycine max] gi|356544621|ref|XP_003540747.1| chr0 156501568 156505442 -
3 domain predictions
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Lj0g3v0303189.1
n.a. Transcriptional factor B3 [Medicago truncatula] gi|124360101|gb|ABN08117.1| chr0 157778769 157779682 -
2 domain predictions
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Lj0g3v0323999.1
n.a. ATP-dependent DNA helicase PIF1 [Medicago truncatula] gi|357516567|ref|XP_003628572.1| chr0 169282114 169288038 -
3 domain predictions
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Lj0g3v0332729.1
n.a. e1-fs protein [Glycine max] gi|387848924|dbj|BAM15654.1| chr0 174128395 174128883 -
3 domain predictions
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Lj0g3v0340729.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1| chr0 178461877 178466913 +
3 domain predictions
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Lj0g3v0342589.1
n.a. PREDICTED: auxin response factor 5-like [Glycine max] gi|356552071|ref|XP_003544394.1| chr0 179616614 179622968 -
3 domain predictions
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Lj0g3v0342589.2
n.a. PREDICTED: auxin response factor 5-like [Glycine max] gi|356552071|ref|XP_003544394.1| chr0 179616614 179623303 -
3 domain predictions
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Lj0g3v0345959.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357439817|ref|XP_003590186.1| chr0 181472502 181473050 +
3 domain predictions
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Lj0g3v0354159.1
n.a. 60S ribosomal protein L7 [Medicago truncatula] gi|357444611|ref|XP_003592583.1| chr0 186515942 186516768 -
3 domain predictions
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Lj0g3v0364159.1
n.a. B3 domain-containing protein [Medicago truncatula] gi|357521093|ref|XP_003630835.1| chr0 192101824 192103061 -
3 domain predictions
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Lj0g3v0364169.1
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356533163|ref|XP_003535137.1| chr0 192103439 192104616 -
3 domain predictions
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Lj0g3v0364169.2
n.a. PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max] gi|356533163|ref|XP_003535137.1| chr0 192103439 192103782 -
3 domain predictions
 –