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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001810
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1082 results. Now displaying 5 of 22 with 50 rows per page. This search has taken 5.759s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0318050.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 3607720 3609680 -
5 domain predictions
1 GO term
Lj1g3v0715470.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|270342099|gb|ACZ74682.1| chr1 9327799 9328252 -
3 domain predictions
1 GO term
Lj1g3v0765550.1
n.a. galactose oxidase [Trifolium repens] gi|289540889|gb|ADD09566.1| chr1 9945907 9947028 +
5 domain predictions
1 GO term
Lj1g3v0814990.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 10713223 10716157 -
4 domain predictions
1 GO term
Lj1g3v0851740.1
n.a. PREDICTED: F-box protein 7-like [Glycine max] gi|356509387|ref|XP_003523431.1| chr1 10988124 10996050 +
5 domain predictions
1 GO term
Lj1g3v1020030.1
n.a. F-box/WD repeat-containing protein [Medicago truncatula] gi|357464045|ref|XP_003602304.1| chr1 12901671 12904135 +
5 domain predictions
1 GO term
Lj1g3v1078890.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 13303859 13306158 +
5 domain predictions
1 GO term
Lj1g3v1078910.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 13308257 13311575 +
5 domain predictions
1 GO term
Lj1g3v1079330.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 13387169 13389713 -
5 domain predictions
1 GO term
Lj1g3v1218950.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP6-like [Cicer arietinum] gi|502136860|ref|XP_004502867.1| chr1 14808163 14810332 +
3 domain predictions
1 GO term
Lj1g3v1355740.1
n.a. PREDICTED: F-box protein At5g39450-like [Glycine max] gi|356518785|ref|XP_003528058.1| chr1 16149311 16152663 +
5 domain predictions
1 GO term
Lj1g3v1355750.1
n.a. n.a. chr1 16149756 16155322 -
5 domain predictions
1 GO term
Lj1g3v1527370.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Cicer arietinum] gi|502142316|ref|XP_004504897.1| chr1 18316347 18317054 -
4 domain predictions
1 GO term
Lj1g3v1537650.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr1 18438536 18442346 -
5 domain predictions
1 GO term
Lj1g3v1537650.2
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr1 18440596 18442346 -
5 domain predictions
1 GO term
Lj1g3v1697870.1
n.a. SLEEPY1a [Lotus japonicus] gi|239914062|dbj|BAH78716.1| chr1 20105156 20106480 -
3 domain predictions
1 GO term
Lj1g3v1798690.1
n.a. PREDICTED: F-box only protein 13-like [Glycine max] gi|356507137|ref|XP_003522327.1| chr1 21690396 21692836 -
5 domain predictions
1 GO term
Lj1g3v2063030.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 24230273 24232073 -
4 domain predictions
1 GO term
Lj1g3v2063060.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 24241180 24243436 -
5 domain predictions
1 GO term
Lj1g3v2063160.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr1 24269816 24271159 -
5 domain predictions
1 GO term
Lj1g3v2157640.1
n.a. F-box protein SKIP19 [Medicago truncatula] gi|357489399|ref|XP_003614987.1| chr1 26057916 26058262 +
3 domain predictions
1 GO term
Lj1g3v2419710.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28404983 28406710 +
5 domain predictions
1 GO term
Lj1g3v2430820.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28427676 28429304 -
2 domain predictions
1 GO term
Lj1g3v2431830.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr1 28436606 28436938 +
3 domain predictions
1 GO term
Lj1g3v2612700.1
n.a. cyclin-like F-box [Phaseolus vulgaris] gi|353685486|gb|AER13163.1| chr1 30341624 30346515 +
2 domain predictions
1 GO term
Lj1g3v2625890.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 30449809 30451638 +
4 domain predictions
1 GO term
Lj1g3v2626080.1
n.a. PREDICTED: LOW QUALITY PROTEIN: F-box protein CPR30-like, partial [Glycine max] gi|356564540|ref|XP_003550511.1| chr1 30494238 30494460 +
4 domain predictions
1 GO term
Lj1g3v2975890.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357512359|ref|XP_003626468.1| chr1 33690807 33694179 -
4 domain predictions
1 GO term
Lj1g3v2982420.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357512425|ref|XP_003626501.1| chr1 34011821 34013820 +
2 domain predictions
1 GO term
Lj1g3v3063830.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34870627 34879263 +
5 domain predictions
1 GO term
Lj1g3v3064040.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34955490 34957844 -
5 domain predictions
1 GO term
Lj1g3v3075120.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 34978950 34982616 +
5 domain predictions
1 GO term
Lj1g3v3078350.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 35047044 35050254 +
5 domain predictions
1 GO term
Lj1g3v3088390.1
n.a. F-box/kelch-repeat protein [Caragana korshinskii] gi|477382017|gb|AGI78244.1| chr1 35057628 35060730 -
5 domain predictions
1 GO term
Lj1g3v3207810.1
n.a. PREDICTED: F-box protein At2g39490-like [Cicer arietinum] gi|502102491|ref|XP_004492092.1| chr1 36373997 36378978 +
4 domain predictions
1 GO term
Lj1g3v3317350.1
n.a. PREDICTED: F-box protein SKIP17-like [Glycine max] gi|356572196|ref|XP_003554256.1| chr1 37107273 37110283 -
2 domain predictions
1 GO term
Lj1g3v3381230.1
n.a. PREDICTED: F-box protein At5g07610-like [Fragaria vesca subsp]. vesca] gi|470131027|ref|XP_004301401.1| chr1 38728616 38729752 +
3 domain predictions
1 GO term
Lj1g3v3384760.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max] gi|356508586|ref|XP_003523036.1| chr1 39007629 39010643 +
5 domain predictions
1 GO term
Lj1g3v3441260.3
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357505605|ref|XP_003623091.1| chr1 39647193 39649542 -
4 domain predictions
1 GO term
Lj1g3v3466000.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max] gi|356524531|ref|XP_003530882.1| chr1 40268381 40272549 -
5 domain predictions
1 GO term
Lj1g3v3598280.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr1 41435637 41440167 -
3 domain predictions
1 GO term
Lj1g3v3609520.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr1 41628479 41629611 +
5 domain predictions
1 GO term
Lj1g3v3609530.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr1 41631360 41632474 +
5 domain predictions
1 GO term
Lj1g3v3609550.1
n.a. F-box family protein [Medicago truncatula] gi|357505507|ref|XP_003623042.1| chr1 41637233 41638107 -
2 domain predictions
1 GO term
Lj1g3v3620590.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510195|ref|XP_003625386.1| chr1 41647807 41648891 +
2 domain predictions
1 GO term
Lj1g3v3646540.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X1 [Cicer arietinum] gi|502167889|ref|XP_004514274.1| chr1 42163063 42164247 +
5 domain predictions
1 GO term
Lj1g3v3715180.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr1 42746795 42747160 +
5 domain predictions
1 GO term
Lj1g3v3752730.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356558779|ref|XP_003547680.1| chr1 43071019 43072646 +
5 domain predictions
1 GO term
Lj1g3v3753740.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356558779|ref|XP_003547680.1| chr1 43077005 43077541 +
5 domain predictions
1 GO term
Lj1g3v3753780.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356558779|ref|XP_003547680.1| chr1 43085895 43086278 +
5 domain predictions
1 GO term