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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008972
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 246 results. Now displaying 3 of 5 with 50 rows per page. This search has taken 6.918s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj5g3v1698930.1
n.a. PREDICTED: monocopper oxidase-like protein SKU5-like [Glycine max] gi|356574687|ref|XP_003555477.1| chr5 24488694 24492439 -
3 domain predictions
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Lj5g3v1874160.1
n.a. PREDICTED: LOW QUALITY PROTEIN: laccase-14-like [Vitis vinifera] gi|359495131|ref|XP_003634921.1| chr5 26830207 26830606 +
3 domain predictions
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Lj5g3v1886260.1
n.a. PREDICTED: laccase-14 [Vitis vinifera] gi|359495139|ref|XP_002264394.2| chr5 26874554 26877577 +
3 domain predictions
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Lj5g3v1887290.1
n.a. multicopper oxidase [Populus trichocarpa] gi|224077332|ref|XP_002335800.1| chr5 26885566 26886629 -
3 domain predictions
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Lj5g3v1887360.1
n.a. PREDICTED: laccase-14-like [Solanum lycopersicum] gi|460384303|ref|XP_004237852.1| chr5 26900011 26911508 -
3 domain predictions
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Lj5g3v1939470.1
n.a. Cupredoxin superfamily protein isoform 1 [Theobroma cacao] gi|508724844|gb|EOY16741.1| chr5 27406806 27408801 -
3 domain predictions
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Lj5g3v2057360.1
n.a. Early nodulin-like protein [Medicago truncatula] gi|357480825|ref|XP_003610698.1| chr5 29618609 29620718 +
3 domain predictions
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Lj5g3v2133780.1
n.a. PREDICTED: spore coat protein A-like isoform X1 [Cicer arietinum] gi|502120451|ref|XP_004496967.1| chr5 30636805 30654752 -
3 domain predictions
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Lj5g3v2133780.2
n.a. PREDICTED: spore coat protein A-like isoform X1 [Cicer arietinum] gi|502120451|ref|XP_004496967.1| chr5 30636805 30654743 -
3 domain predictions
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Lj5g3v2133780.3
n.a. PREDICTED: spore coat protein A-like isoform X1 [Cicer arietinum] gi|502120451|ref|XP_004496967.1| chr5 30651269 30654743 -
3 domain predictions
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Lj5g3v2244620.1
n.a. PREDICTED: blue copper protein-like [Cicer arietinum] gi|502121081|ref|XP_004497181.1| chr5 32514381 32515417 -
3 domain predictions
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Lj6g3v0215810.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Glycine max] gi|356540081|ref|XP_003538519.1| chr6 2206296 2209561 +
3 domain predictions
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Lj6g3v0227360.1
n.a. PREDICTED: L-ascorbate oxidase homolog [Cicer arietinum] gi|502134585|ref|XP_004502172.1| chr6 2577262 2579088 +
3 domain predictions
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Lj6g3v0607060.1
n.a. PREDICTED: laccase-4-like [Glycine max] gi|356566153|ref|XP_003551299.1| chr6 5972108 5975707 +
3 domain predictions
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Lj6g3v1018390.1
n.a. PREDICTED: L-ascorbate oxidase-like [Glycine max] gi|356575056|ref|XP_003555658.1| chr6 11341649 11342161 -
3 domain predictions
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Lj6g3v1028660.1
n.a. PREDICTED: L-ascorbate oxidase [Glycine max] gi|356575058|ref|XP_003555659.1| chr6 11467429 11473327 +
3 domain predictions
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Lj6g3v1028700.1
n.a. ascorbate oxidase [Pisum sativum] gi|224770639|dbj|BAH28261.1| chr6 11481283 11483507 +
3 domain predictions
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Lj6g3v1316280.1
n.a. PREDICTED: early nodulin-like protein 2-like [Glycine max] gi|356544974|ref|XP_003540921.1| chr6 15607606 15608506 +
3 domain predictions
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Lj6g3v1786700.1
n.a. PREDICTED: cucumber peeling cupredoxin-like [Glycine max] gi|356555720|ref|XP_003546178.1| chr6 19966008 19967536 -
3 domain predictions
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Lj6g3v1870530.1
n.a. L-ascorbate oxidase-like protein [Medicago truncatula] gi|357480333|ref|XP_003610452.1| chr6 20413685 20414306 +
3 domain predictions
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Ljmitog3v0000870.1
n.a. mitochondrial cytochrome c oxidase subunit II (mitochondrion) [Vicia faba] gi|442803102|gb|AGC78837.1| mito 366286 374194 -
3 domain predictions
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LotjaGi1g1v0052600.1
n.a. Blue copper protein; TAIR: AT1G08500.1 early nodulin-like protein 18; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3S4A4|I3S4A4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0052600 LjG1.1_chr1 7431714 7435716 -
3 domain predictions
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LotjaGi1g1v0055700.1
n.a. Early nodulin-like protein; TAIR: AT2G27035.1 early nodulin-like protein 20; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|A0A151U1Q4|A0A151U1Q4_CAJCA Lamin-like protein; Found in the gene: LotjaGi1g1v0055700 LjG1.1_chr1 7841572 7843617 +
3 domain predictions
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LotjaGi1g1v0073600.1
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|A0A0S3RKD8|A0A0S3RKD8_PHAAN Laccase; Found in the gene: LotjaGi1g1v0073600 LjG1.1_chr1 10583627 10586838 +
3 domain predictions
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LotjaGi1g1v0073600.2
n.a. Laccase; TAIR: AT2G40370.1 laccase 5; Swiss-Prot: sp|Q9SIY8|LAC5_ARATH Laccase-5; TrEMBL-Plants: tr|V7B764|V7B764_PHAVU Laccase; Found in the gene: LotjaGi1g1v0073600 LjG1.1_chr1 10584045 10586529 +
3 domain predictions
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LotjaGi1g1v0081300.1
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A151S1M1|A0A151S1M1_CAJCA Laccase; Found in the gene: LotjaGi1g1v0081300 LjG1.1_chr1 11775299 11779100 -
3 domain predictions
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LotjaGi1g1v0081300.2
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A151S1M1|A0A151S1M1_CAJCA Laccase; Found in the gene: LotjaGi1g1v0081300 LjG1.1_chr1 11775683 11778473 -
3 domain predictions
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LotjaGi1g1v0114400.1
n.a. Laccase; TAIR: AT2G30210.1 laccase 3; Swiss-Prot: sp|Q56YT0|LAC3_ARATH Laccase-3; TrEMBL-Plants: tr|I1JHH8|I1JHH8_SOYBN Laccase; Found in the gene: LotjaGi1g1v0114400 LjG1.1_chr1 17994349 17998701 +
3 domain predictions
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LotjaGi1g1v0114400.2
n.a. Laccase; TAIR: AT2G30210.1 laccase 3; Swiss-Prot: sp|Q56YT0|LAC3_ARATH Laccase-3; TrEMBL-Plants: tr|G7JZP3|G7JZP3_MEDTR Laccase; Found in the gene: LotjaGi1g1v0114400 LjG1.1_chr1 17994717 17998285 +
3 domain predictions
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LotjaGi1g1v0123400.1
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|I1JHB0|I1JHB0_SOYBN Laccase; Found in the gene: LotjaGi1g1v0123400 LjG1.1_chr1 19590354 19595836 -
3 domain predictions
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LotjaGi1g1v0123400.2
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|G7KE42|G7KE42_MEDTR Laccase; Found in the gene: LotjaGi1g1v0123400 LjG1.1_chr1 19590799 19593819 -
3 domain predictions
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LotjaGi1g1v0133700.1
n.a. L-ascorbate oxidase; TAIR: AT5G21105.1 Plant L-ascorbate oxidase; Swiss-Prot: sp|P14133|ASO_CUCSA L-ascorbate oxidase; TrEMBL-Plants: tr|J7GBJ3|J7GBJ3_LOTJA Ascorbate oxidase; Found in the gene: LotjaGi1g1v0133700 LjG1.1_chr1 21505384 21514291 +
3 domain predictions
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LotjaGi1g1v0218900.1
n.a. Laccase; TAIR: AT5G01040.1 laccase 8; Swiss-Prot: sp|Q9LFD2|LAC8_ARATH Laccase-8; TrEMBL-Plants: tr|A0A072U0V9|A0A072U0V9_MEDTR Laccase; Found in the gene: LotjaGi1g1v0218900 LjG1.1_chr1 48487254 48495551 -
3 domain predictions
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LotjaGi1g1v0340500.1
n.a. Blue copper protein; TAIR: AT1G72230.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3SFL9|I3SFL9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0340500 LjG1.1_chr1 80243047 80244823 -
3 domain predictions
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LotjaGi1g1v0351800.1
n.a. Blue copper protein; TAIR: AT2G15780.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3SVZ3|I3SVZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0351800 LjG1.1_chr1 82319988 82321489 +
3 domain predictions
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LotjaGi1g1v0377200.1
n.a. Early nodulin-like protein; TAIR: AT2G25060.1 early nodulin-like protein 14; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|I3T466|I3T466_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0377200 LjG1.1_chr1 85676808 85677881 -
3 domain predictions
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LotjaGi1g1v0432600.1
n.a. Plastocyanin; TAIR: AT1G76100.1 plastocyanin 1; Swiss-Prot: sp|P16002|PLAS_PEA Plastocyanin, chloroplastic; TrEMBL-Plants: tr|I3S8T0|I3S8T0_LOTJA Plastocyanin; Found in the gene: LotjaGi1g1v0432600 LjG1.1_chr1 92747670 92748173 -
3 domain predictions
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LotjaGi1g1v0433900.1
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VDP0|A0A072VDP0_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi1g1v0433900 LjG1.1_chr1 92854936 92863036 -
3 domain predictions
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LotjaGi1g1v0433900.2
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VDP0|A0A072VDP0_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi1g1v0433900 LjG1.1_chr1 92855465 92857791 -
3 domain predictions
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LotjaGi1g1v0433900.3
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VDP0|A0A072VDP0_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi1g1v0433900 LjG1.1_chr1 92855465 92858109 -
3 domain predictions
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LotjaGi1g1v0465500.1
n.a. Early nodulin-like protein; TAIR: AT1G08500.1 early nodulin-like protein 18; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|V7B314|V7B314_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0465500 LjG1.1_chr1 97351229 97352777 +
3 domain predictions
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LotjaGi1g1v0579400.1
n.a. Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A072U047|A0A072U047_MEDTR Laccase; Found in the gene: LotjaGi1g1v0579400 LjG1.1_chr1 111893240 111896984 -
3 domain predictions
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LotjaGi1g1v0582000.1
n.a. Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A151QZC4|A0A151QZC4_CAJCA Laccase-17; Found in the gene: LotjaGi1g1v0582000 LjG1.1_chr1 112135679 112140955 +
3 domain predictions
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LotjaGi1g1v0582000.2
n.a. Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|I1KZE6|I1KZE6_SOYBN Laccase; Found in the gene: LotjaGi1g1v0582000 LjG1.1_chr1 112135679 112140955 +
3 domain predictions
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LotjaGi1g1v0582200.1
n.a. Laccase; TAIR: AT5G60020.1 laccase 17; Swiss-Prot: sp|Q9FJD5|LAC17_ARATH Laccase-17; TrEMBL-Plants: tr|A0A072U047|A0A072U047_MEDTR Laccase; Found in the gene: LotjaGi1g1v0582200 LjG1.1_chr1 112152013 112154864 +
3 domain predictions
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LotjaGi1g1v0595600.1
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT5G48450.2 SKU5 similar 3; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|A0A0S3RUC6|A0A0S3RUC6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0595600 LjG1.1_chr1 113521805 113527351 +
3 domain predictions
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LotjaGi1g1v0595600.2
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT5G48450.2 SKU5 similar 3; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|A0A151SII9|A0A151SII9_CAJCA Monocopper oxidase-like protein SKU5; Found in the gene: LotjaGi1g1v0595600 LjG1.1_chr1 113522901 113527027 +
3 domain predictions
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LotjaGi1g1v0623100.1
n.a. Blue copper protein; TAIR: AT3G27200.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|I3T2G3|I3T2G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0623100 LjG1.1_chr1 117022946 117024152 -
3 domain predictions
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LotjaGi1g1v0645800.1
n.a. Blue copper protein; TAIR: AT3G17675.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|G7L0I0|G7L0I0_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi1g1v0645800 LjG1.1_chr1 120271598 120272812 -
3 domain predictions
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LotjaGi1g1v0645900.1
n.a. Blue copper protein; TAIR: AT2G32300.1 uclacyanin 1; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|G7L0H0|G7L0H0_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi1g1v0645900 LjG1.1_chr1 120287855 120288761 +
3 domain predictions
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