Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0055700 |
| Transcript ID | LotjaGi1g1v0055700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Early nodulin-like protein; TAIR: AT2G27035.1 early nodulin-like protein 20; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|A0A151U1Q4|A0A151U1Q4_CAJCA Lamin-like protein; Found in the gene: LotjaGi1g1v0055700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7841572..7843617) extracted from Lotus japonicus Gifu genome v1.2.
TAGACTTTGACATCACAGTAAAAAAAAGTGAGAAAAAAATGGATGTTTTGAGCTTCACAAAAATGGGGTTGATGGTGATG GTGATGTTGATGATGTTGGCAAACATGGCAAAAGGTGAGCCTCACTATGTTGGAGGGAGCAAGATAAGTTGGGCACCTAA TGTTAACATGACTGAATGGGCATCTCATGAGCACTTTCATCTGAAGGATTGGCTATGTAAGCTTTCTTTTCTCTCTTTTA TTCTATTTTAATAAAATTTGAGTGAAATAGTTAGTGTATGTTTGAAATCTCTGTAGATTTTCATGTTAGGAGTAGAACTG ATGGTAATTTCTCTTTCGTCAAAATCAATTCTGATATCTAGAGACTAGTCGGCAAAACTTCTTTCCTGGATTAATTTTAG TCTTAGAATCAATTGTAGAAGAAATATCAAACATACATTGATTCTGAAAAAAAAAAGACTTACACCTAATAACCTGTAAG CAAAAAGAAGGTGATTTTGGAAAATTGAAACAAACTGAACATGCTATTAGCATAGGAACCCTAATTACTCTACAAACCCC CAAATTCATGTTAGTAGATTAATTAGTAACTTCAGTTTGGCAGAACCAATTTTGTCACTTGGAATTTTTTTAGCACCCAA AAATGACTCACATAAAGTTTTCGTTAGAATTAATTTTGGCTTAAGAATTCGTTGTTGTAGAAGAGTTAGCAAACATACAA TCATTCTGAAAGAAACAACTCCTAATAGCTTTTGTTGAAGAAAAAGTAATTCTGTAAAAATGTATACAAAGGGAACACAC TATTAGCAGCATGAGAACCCAAATTGCTCCCTAAACACTCAAACTCTTCAATTTTTACATCATCAAATTTAGGGGTTTGT GTTTGTGCATATATTATTCCAGAATTAATCACACCATTCTGACACTCAACACACTAAAATTTCCAAACTACTTTCAATTA TTTCTCTTGCATTGTTTTTTACTTGTTTCCAAAATTTCCAATTTCCTATGCTGAACCCTTGCAAACGTTCAATGAAAATT ATACATTTGCACACACTATGAATGATTGTTTATAACTTATGATTATATCCAGATAAACTGTTCTTAACACAAACTCTTAT AAATTGTCAAACAACTGTGTTTAGATACCATTTGAGTAATTTTAACCCTCACACTTTCTTTATCTTGAAGTACAATGTTC ATTTACAATGGATATACTCAAATACACCCTCATATGATTAAGGGAGCTGAAAGTTCAAGTAAAATTATCCCCAATAAATA CATAACAAACGACAAATTACATCCATTACTTTTCTCTTTTTCTCTTCCATTGGACTCTAGATGCATGTCCAAATGTCTGC TAATCATTTTCCAAATACAATGATTGAGATATATGCATCTCTTCCCTCAATTTTTTTTTCTTCTTTTGATTAGTGTAATC ATATTATGATGAATGGAGATGTGAAACAGTCTCACGCCATCATTGAAAACTGCACATAATATTGTAGATTATTTGCTTTA TAGCTGTTCACAATGATTCACTGATTTTATTATGCTTGCAAGACTTTGGATATGATAGGCATATGTTCAATGTTCTGGAA GTGAACAAGACAAGCTATGAAAACTGCAGGGACACAGATTTCATCAAGAACATATCAAGGGGTGGAGGAAAAGATGTGTT TCAGCTGACAGAGGAAAAAACCTATTACTTCTTAAGTGGAGGAGGGTTTTGTTGGGGAGGTATGAAGGTTGCAATTGATG TTACTGATTATGTTGCACCAGCTCCTCAACCTGTTCCATCAAAAGGAGGTTCTGATTCAGATGCTTCTGGCATTCATGTC TACCACACACTTGTACTGCTCATCTTAGTCTTGATGTCGATCATCCCATTCAACTAACATCAGCTACTAGAAATAGCAGA ACATAAACTAGATTTACAATATCATCAACTATATACATTGTGTTAATTTTCTTACTTTTCCTAGAGCATGTTTGGTTCTG CATTTATAAGTATTAGAACTAATTCTCTATAGTCATAAACAATTTT
CDS sequence (LotjaGi1g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTTTGAGCTTCACAAAAATGGGGTTGATGGTGATGGTGATGTTGATGATGTTGGCAAACATGGCAAAAGGTGA GCCTCACTATGTTGGAGGGAGCAAGATAAGTTGGGCACCTAATGTTAACATGACTGAATGGGCATCTCATGAGCACTTTC ATCTGAAGGATTGGCTATACTTTGGATATGATAGGCATATGTTCAATGTTCTGGAAGTGAACAAGACAAGCTATGAAAAC TGCAGGGACACAGATTTCATCAAGAACATATCAAGGGGTGGAGGAAAAGATGTGTTTCAGCTGACAGAGGAAAAAACCTA TTACTTCTTAAGTGGAGGAGGGTTTTGTTGGGGAGGTATGAAGGTTGCAATTGATGTTACTGATTATGTTGCACCAGCTC CTCAACCTGTTCCATCAAAAGGAGGTTCTGATTCAGATGCTTCTGGCATTCATGTCTACCACACACTTGTACTGCTCATC TTAGTCTTGATGTCGATCATCCCATTCAACTAA
Protein sequence (LotjaGi1g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVLSFTKMGLMVMVMLMMLANMAKGEPHYVGGSKISWAPNVNMTEWASHEHFHLKDWLYFGYDRHMFNVLEVNKTSYEN CRDTDFIKNISRGGGKDVFQLTEEKTYYFLSGGGFCWGGMKVAIDVTDYVAPAPQPVPSKGGSDSDASGIHVYHTLVLLI LVLMSIIPFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| PANTHER | 10 | 166 | 157 | 3.7E-74 | ||
| PANTHER | 10 | 166 | 157 | 3.7E-74 | – | |
| Phobius | 25 | 149 | 125 | - | – | |
| Gene3D | 26 | 131 | 106 | 1.6E-23 | ||
| ProSiteProfiles | 27 | 128 | 102 | 27.554 | ||
| SUPERFAMILY | 28 | 126 | 99 | 1.7E-22 | ||
| Pfam | 38 | 119 | 82 | 3.8E-15 | ||
| Phobius | 150 | 169 | 20 | - | – | |
| TMHMM | 150 | 169 | 20 | - | – | |
| Phobius | 170 | 170 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
Expression pattern of LotjaGi1g1v0055700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…