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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015655
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 272 results. Now displaying 2 of 6 with 50 rows per page. This search has taken 5.935s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0429450.1
n.a. protein phosphatase type 2C [Lotus japonicus] gi|4336436|gb|AAD17805.1| chr3 4350811 4354092 +
2 domain predictions
2 GO terms
Lj3g3v0429460.1
n.a. protein phosphatase type 2C [Lotus japonicus] gi|4336436|gb|AAD17805.1| chr3 4350935 4354257 +
2 domain predictions
2 GO terms
Lj3g3v2063820.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like isoform 1 [Glycine max] gi|356523193|ref|XP_003530226.1| chr3 26562265 26569438 +
2 domain predictions
2 GO terms
Lj3g3v2782650.1
n.a. PREDICTED: probable protein phosphatase 2C 52-like [Glycine max] gi|356549938|ref|XP_003543347.1| chr3 34244101 34247806 -
2 domain predictions
2 GO terms
Lj3g3v3200830.1
n.a. PREDICTED: probable protein phosphatase 2C 4-like [Glycine max] gi|356542439|ref|XP_003539674.1| chr3 39513226 39516548 -
2 domain predictions
2 GO terms
Lj4g3v0286220.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 28-like [Cicer arietinum] gi|502142364|ref|XP_004504921.1| chr4 3484774 3486393 -
2 domain predictions
2 GO terms
Lj4g3v0341180.1
n.a. PREDICTED: probable protein phosphatase 2C 9-like [Cicer arietinum] gi|502142127|ref|XP_004504804.1| chr4 4587622 4592277 +
2 domain predictions
2 GO terms
Lj4g3v0575020.1
n.a. protein phosphatase 2C [Hevea brasiliensis] gi|194241584|gb|ACF35047.1| chr4 9057963 9058368 +
2 domain predictions
2 GO terms
Lj4g3v1140650.1
n.a. PREDICTED: protein phosphatase 2C 29-like isoform X1 [Cicer arietinum] gi|502152612|ref|XP_004509008.1| chr4 17040262 17046815 +
2 domain predictions
2 GO terms
Lj4g3v1971920.1
n.a. PREDICTED: probable protein phosphatase 2C 27-like [Cicer arietinum] gi|502151361|ref|XP_004508403.1| chr4 27381630 27385290 +
2 domain predictions
2 GO terms
Lj4g3v2172980.1
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30014309 30017859 +
2 domain predictions
2 GO terms
Lj4g3v2172980.2
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30015396 30017859 +
2 domain predictions
2 GO terms
Lj4g3v2172980.3
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502150464|ref|XP_004507966.1| chr4 30015430 30017147 +
2 domain predictions
2 GO terms
Lj4g3v2251410.1
n.a. PREDICTED: probable protein phosphatase 2C 13-like [Cicer arietinum] gi|502150748|ref|XP_004508104.1| chr4 31171737 31173949 +
2 domain predictions
2 GO terms
Lj4g3v2265160.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr4 31491064 31495674 +
2 domain predictions
2 GO terms
Lj4g3v2265170.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr4 31491210 31494389 +
2 domain predictions
2 GO terms
Lj4g3v2265180.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr4 31495142 31495357 +
2 domain predictions
2 GO terms
Lj4g3v2325790.1
n.a. PREDICTED: probable protein phosphatase 2C 40-like [Glycine max] gi|356519974|ref|XP_003528643.1| chr4 32337795 32343007 -
2 domain predictions
2 GO terms
Lj4g3v3044980.2
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502138645|ref|XP_004503481.1| chr4 40687455 40692320 -
2 domain predictions
2 GO terms
Lj5g3v0122120.1
n.a. Protein phosphatase 2C [Medicago truncatula] gi|357441117|ref|XP_003590836.1| chr5 1354112 1356922 -
2 domain predictions
2 GO terms
Lj5g3v0380040.1
n.a. PREDICTED: probable protein phosphatase 2C 72-like [Cicer arietinum] gi|502125418|ref|XP_004498917.1| chr5 3541029 3544479 -
2 domain predictions
2 GO terms
Lj5g3v0473720.1
n.a. PREDICTED: probable protein phosphatase 2C 59 [Glycine max] gi|356563977|ref|XP_003550233.1| chr5 4778949 4782776 -
2 domain predictions
2 GO terms
Lj5g3v0473720.2
n.a. PREDICTED: probable protein phosphatase 2C 59-like [Glycine max] gi|356552431|ref|XP_003544571.1| chr5 4778949 4784645 -
2 domain predictions
2 GO terms
Lj5g3v0510720.1
n.a. Protein phosphatase [Medicago truncatula] gi|357437191|ref|XP_003588871.1| chr5 5240726 5248807 -
2 domain predictions
2 GO terms
Lj5g3v0615580.1
n.a. PREDICTED: probable protein phosphatase 2C 38-like [Glycine max] gi|356548190|ref|XP_003542486.1| chr5 7785671 7788942 +
2 domain predictions
2 GO terms
Lj5g3v0921300.1
n.a. PREDICTED: probable protein phosphatase 2C 43-like [Glycine max] gi|356530695|ref|XP_003533916.1| chr5 13783563 13787577 +
2 domain predictions
2 GO terms
Lj5g3v1003920.1
n.a. Phosphatase 2C family protein isoform 4 [Theobroma cacao] gi|508702756|gb|EOX94652.1| chr5 15987821 16017169 -
2 domain predictions
2 GO terms
Lj5g3v1176950.1
n.a. Protein phosphatase 2C [Medicago truncatula] gi|357441117|ref|XP_003590836.1| chr5 19076170 19078980 +
2 domain predictions
2 GO terms
Lj5g3v1501480.1
n.a. PREDICTED: probable protein phosphatase 2C 73-like [Glycine max] gi|356576817|ref|XP_003556526.1| chr5 21985892 21989005 +
2 domain predictions
2 GO terms
Lj5g3v1550010.1
n.a. n.a. chr5 22748193 22757734 +
2 domain predictions
2 GO terms
Lj5g3v1550020.1
n.a. PREDICTED: probable protein phosphatase 2C 49-like [Cicer arietinum] gi|502117614|ref|XP_004495879.1| chr5 22755271 22757734 -
2 domain predictions
2 GO terms
Lj5g3v2111960.1
n.a. PREDICTED: probable protein phosphatase 2C 63-like isoform 1 [Glycine max] gi|356536129|ref|XP_003536592.1| chr5 30209571 30211898 +
2 domain predictions
2 GO terms
Lj5g3v2182450.1
n.a. PREDICTED: probable protein phosphatase 2C 15-like isoform X1 [Cicer arietinum] gi|502120731|ref|XP_004497062.1| chr5 31585598 31589642 +
2 domain predictions
2 GO terms
Lj5g3v2245910.1
n.a. PREDICTED: probable protein phosphatase 2C 64-like [Glycine max] gi|356536388|ref|XP_003536720.1| chr5 32547182 32551589 +
2 domain predictions
2 GO terms
Lj5g3v2288670.1
n.a. PREDICTED: probable protein phosphatase 2C 11-like isoform X1 [Cicer arietinum] gi|502121442|ref|XP_004497321.1| chr5 33334782 33338844 +
2 domain predictions
2 GO terms
Lj5g3v2292600.1
n.a. PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum] gi|502121558|ref|XP_004497368.1| chr5 33599560 33603527 +
2 domain predictions
2 GO terms
Lj5g3v2302960.1
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Fragaria vesca subsp]. vesca] gi|470121230|ref|XP_004296680.1| chr5 34165559 34167126 -
2 domain predictions
2 GO terms
Lj5g3v2302960.2
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Glycine max] gi|356523728|ref|XP_003530487.1| chr5 34165559 34166139 -
2 domain predictions
2 GO terms
Lj6g3v1090120.1
n.a. PREDICTED: probable protein phosphatase 2C 27-like [Cicer arietinum] gi|502151361|ref|XP_004508403.1| chr6 13234417 13237751 -
2 domain predictions
2 GO terms
Lj6g3v1211810.1
n.a. PREDICTED: probable protein phosphatase 2C 6-like [Cicer arietinum] gi|502165170|ref|XP_004513451.1| chr6 15043730 15046934 -
2 domain predictions
2 GO terms
Lj6g3v1444570.1
n.a. PREDICTED: probable protein phosphatase 2C 40-like [Cicer arietinum] gi|502085166|ref|XP_004487853.1| chr6 17001915 17005124 -
2 domain predictions
2 GO terms
Lj6g3v1492500.1
n.a. PREDICTED: probable protein phosphatase 2C 73-like [Glycine max] gi|356564351|ref|XP_003550418.1| chr6 17349895 17352495 +
2 domain predictions
2 GO terms
Lj6g3v1573440.1
n.a. rfls10 protein [Glycine max] gi|345651734|gb|AEO14877.1| chr6 17870421 17872927 -
2 domain predictions
2 GO terms
Lj6g3v1573450.1
n.a. rfls10 protein [Glycine max] gi|345651734|gb|AEO14877.1| chr6 17870747 17872927 -
2 domain predictions
2 GO terms
Lj6g3v1901390.1
n.a. PREDICTED: probable protein phosphatase 2C 35-like isoform 2 [Glycine max] gi|356549035|ref|XP_003542904.1| chr6 21295071 21299138 +
2 domain predictions
2 GO terms
Lj6g3v1915670.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr6 21444067 21448677 -
2 domain predictions
2 GO terms
Lj6g3v1915690.1
n.a. PREDICTED: probable protein phosphatase 2C 42-like [Cicer arietinum] gi|502080367|ref|XP_004486541.1| chr6 21445352 21448531 -
2 domain predictions
2 GO terms
Lj6g3v2218200.1
n.a. PREDICTED: probable protein phosphatase 2C 10-like [Glycine max] gi|356525876|ref|XP_003531547.1| chr6 25677927 25682446 -
2 domain predictions
2 GO terms
LotjaGi1g1v0087200.1
n.a. Protein phosphatase 2C-like protein; TAIR: AT1G07430.1 highly ABA-induced PP2C protein 2; Swiss-Prot: sp|Q9LNW3|P2C03_ARATH Protein phosphatase 2C 3; TrEMBL-Plants: tr|A0A0R4J5P1|A0A0R4J5P1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0087200 LjG1.1_chr1 12608971 12611618 -
2 domain predictions
2 GO terms
LotjaGi1g1v0118100.1
n.a. Protein phosphatase 2C; TAIR: AT2G30020.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|O80871|P2C25_ARATH Probable protein phosphatase 2C 25; TrEMBL-Plants: tr|A0A151RT57|A0A151RT57_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0118100 LjG1.1_chr1 18589306 18592035 -
2 domain predictions
2 GO terms